Rh4AG220700

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000298
Physical Location & Seq
Reverse (-)
51927580 .. 51929639
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG220700.1

Sequence Viewer

Length: 336 bp
ATGGCCTTAGTAATGGACATTCTATCAAGGGTTTCCATCAAGACCCTTTACAATTGTAGGTGCGTCTGCAAAGACTGGCTTCACATGATTTGTGACCGTCAATTTGCTAATGTACACCGTTTAAGATCATCCATCAGCATCTTGATCAGGACCAATCCCAGTGCAGAAGGAAAAAGGAAACTTGGATTAGTCCAGATAGAAAAATGTGCTGGCTCTCGTTTGCGAGTCGAAACTCGAAAGAATGAGAGCCAAGGAGTTTTCTGCCGTGTCAGCAATGAGATAGACAAAGGGTATCCCCCGAATGTCAATGGACAGAGGCCTCTTTTTGTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

111

Amino Acids

12.69

Weight (kDa)

9.84

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 35 7.2e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 114
AoxI GGCC 2 cut(s) 3, 317
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AspS9I GGNCC 1 cut(s) 150
AvaII GGWCC 1 cut(s) 150
BccI CCATC 2 cut(s) 44, 140
BceAI ACGGC 1 cut(s) 249
BciVI GTATCC 1 cut(s) 303
BclI TGATCA 1 cut(s) 144
BfaI CTAG 1 cut(s) 334
BfuI GTATCC 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 250
Bse1I ACTGG 2 cut(s) 80, 159
Bse3DI GCAATG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 128
BseMI GCAATG 1 cut(s) 280
BseNI ACTGG 2 cut(s) 80, 159
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 2 cut(s) 5, 319
BsnI GGCC 2 cut(s) 5, 319
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 2 cut(s) 125, 144
BspANI GGCC 2 cut(s) 5, 319
BsrDI GCAATG 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 112
BsrI ACTGG 2 cut(s) 80, 159
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 125, 144
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 98, 119
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 128
BstKTI GATC 2 cut(s) 128, 147
BstMBI GATC 2 cut(s) 125, 144
BstMWI GCNNNNNNNGC 1 cut(s) 270
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 2 cut(s) 5, 319
BtsCI GGATG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 85
CviJI RGCY 5 cut(s) 5, 79, 213, 249, 319
CviKI_1 RGCY 5 cut(s) 5, 79, 213, 249, 319
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 1 cut(s) 7
DpnI GATC 2 cut(s) 127, 146
DpnII GATC 2 cut(s) 125, 144
Eco130I CCWWGG 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 88
FaiI YATR 1 cut(s) 86
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FatI CATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 144
FokI GGATG 1 cut(s) 115
FspBI CTAG 1 cut(s) 334
HaeIII GGCC 2 cut(s) 5, 319
HgaI GACGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 88
HinfI GANTC 1 cut(s) 225
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 4 cut(s) 40, 142, 148, 193
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 98, 119
HpyCH4V TGCA 2 cut(s) 69, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 7
Hsp92II CATG 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 2 cut(s) 125, 144
LpnPI CCDG 5 cut(s) 61, 133, 172, 195, 206
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 127, 146
MboI GATC 2 cut(s) 125, 144
MfeI CAATTG 1 cut(s) 52
MluCI AATT 2 cut(s) 52, 101
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 2 cut(s) 309, 330
MseI TTAA 1 cut(s) 122
MunI CAATTG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 2 cut(s) 125, 144
NlaIII CATG 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 92
PceI AGGCCT 1 cut(s) 319
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 122
Sau3AI GATC 2 cut(s) 125, 144
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 234
SetI ASST 1 cut(s) 62
SfaNI GCATC 1 cut(s) 147
SinI GGWCC 1 cut(s) 150
Sse9I AATT 2 cut(s) 52, 101
SseBI AGGCCT 1 cut(s) 319
SspMI CTAG 1 cut(s) 334
StuI AGGCCT 1 cut(s) 319
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 98, 119
TaqI TCGA 2 cut(s) 228, 235
TasI AATT 2 cut(s) 52, 101
TatI WGTACW 1 cut(s) 112
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 150
XspI CTAG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.