Rorug04G0159200

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000298
Physical Location & Seq
Forward (+)
27780743 .. 27781453
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0159200.1

Sequence Viewer

Length: 597 bp
ATGCCCTTTCTTCACTCTACTTTGTTCAACAATTACTTGGCCTTGTTTCAATCTAAATCCTCAAAGCCCAGCAACTCTACCAACACCCAGATAGGGAAGCTTGTGAGGGACCCACCAATACCCAGAGTCACTAATCTTGAGGAGGACGATATGCCTGAGAGGCGTCCTCCGCCTTGGCCTGTCCGCTTCGCTCAGGTTTCTAAGTTGAAACAGTGTTCGGTAGTAGTCATCTCTTTGTTTAAACAAATGGGTCTCGTCGGAATAGGTCATGATGCCTCTGCTCTAACAAAGAATAGTGCAGCTATTCAATTACTTAGGAAGAGATGGTTGCCTATAGCACCATCATTGACAGTCTTTTGGAAAGAAGCTACAAGGCTGTTGAATGAAATGGTGATGGCCGTGGAAGCAAAAAGTGTGGTTGAAATGATGATTCAAAGAGATATTGAACTGTATATCCTCGCTCACAGTTCGCCTGTGGATGGAGATGGTTACTGTTTGCGAGGAGAAATGGATGAGGCAAAAGAAGTTTTTGCTCTATTGGTGGTTACTGTTTGCGAGGAGAAATGGATGAGGCTAATGAAGTTTTTGATCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

198

Amino Acids

22.49

Weight (kDa)

8.43

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 170, 184
AcoI YGGCCR 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 93, 479
AgsI TTSAA 8 cut(s) 28, 50, 208, 308, 382, 422, 434, 446
AloI GAACNNNNNNTCC 2 cut(s) 438, 470
AluBI AGCT 3 cut(s) 100, 302, 368
AluI AGCT 3 cut(s) 100, 302, 368
Alw26I GTCTC 1 cut(s) 257
AoxI GGCC 3 cut(s) 39, 176, 396
ApeKI GCWGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 311
BccI CCATC 5 cut(s) 318, 349, 388, 473, 479
BceAI ACGGC 1 cut(s) 383
BcoDI GTCTC 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 333
BglI GCCNNNNNGGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 110, 111
BmsI GCATC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 151, 183
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 173, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 479
BseDI CCNNGG 2 cut(s) 173, 399
BseGI GGATG 3 cut(s) 484, 517, 573
BseLI CCNNNNNNNGG 2 cut(s) 93, 479
BseMII CTCAG 2 cut(s) 147, 206
BseRI GAGGAG 3 cut(s) 155, 516, 572
BseXI GCAGC 1 cut(s) 311
BseYI CCCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 3 cut(s) 41, 178, 398
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 93, 479
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 3 cut(s) 41, 178, 398
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 588
BspACI CCGC 2 cut(s) 170, 184
BspANI GGCC 3 cut(s) 41, 178, 398
BspCNI CTCAG 2 cut(s) 148, 205
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 110, 111
BspTNI GGTCTC 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 173, 399
BssMI GATC 1 cut(s) 588
BssNI GRCGYC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 173
Bst4CI ACNGT 6 cut(s) 213, 352, 450, 467, 494, 550
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 163
BstDEI CTNAG 4 cut(s) 156, 192, 201, 314
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 3 cut(s) 484, 517, 573
BstKTI GATC 1 cut(s) 591
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 588
BstMWI GCNNNNNNNGC 3 cut(s) 160, 169, 404
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 311
BsuRI GGCC 3 cut(s) 41, 178, 398
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 3 cut(s) 484, 517, 573
BtsIMutI CAGTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 109
CseI GACGC 1 cut(s) 152
CspCI CAANNNNNGTGG 2 cut(s) 396, 431
CviAII CATG 1 cut(s) 269
CviJI RGCY 9 cut(s) 41, 67, 100, 178, 302, 368, 376, 398, 574
CviKI_1 RGCY 9 cut(s) 41, 67, 100, 178, 302, 368, 376, 398, 574
DdeI CTNAG 4 cut(s) 156, 192, 201, 314
DpnI GATC 1 cut(s) 590
DpnII GATC 1 cut(s) 588
DraI TTTAAA 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
EciI GGCGGA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 1 cut(s) 272
FaiI YATR 4 cut(s) 152, 270, 335, 453
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 3 cut(s) 491, 524, 580
Fsp4HI GCNGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 300
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 41, 178, 398
HgaI GACGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 126, 430
HphI GGTGA 1 cut(s) 403
Hpy188I TCNGA 1 cut(s) 260
Hpy188III TCNNGA 2 cut(s) 137, 269
Hpy99I CGWCG 1 cut(s) 260
HpyCH4III ACNGT 6 cut(s) 213, 352, 450, 467, 494, 550
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 169, 404
HpyF3I CTNAG 4 cut(s) 156, 192, 201, 314
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 1 cut(s) 272
KflI GGGWCCC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 588
LpnPI CCDG 7 cut(s) 82, 101, 136, 168, 179, 192, 486
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 1 cut(s) 262
MaeIII GTNAC 3 cut(s) 127, 488, 544
MalI GATC 1 cut(s) 590
MboI GATC 1 cut(s) 588
MboII GAAGA 1 cut(s) 331
MluCI AATT 2 cut(s) 31, 308
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 238
MseI TTAA 1 cut(s) 240
MssI GTTTAAAC 1 cut(s) 241
MwoI GCNNNNNNNGC 3 cut(s) 160, 169, 404
NdeII GATC 1 cut(s) 588
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 2 cut(s) 110, 111
NmuCI GTSAC 1 cut(s) 127
PagI TCATGA 1 cut(s) 268
PfeI GAWTC 1 cut(s) 430
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 1 cut(s) 134
PmeI GTTTAAAC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 134
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 110, 111
PspPI GGNCC 1 cut(s) 109
PspPPI RGGWCCY 1 cut(s) 109
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 1 cut(s) 588
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 135
SetI ASST 5 cut(s) 102, 198, 268, 304, 370
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 31, 308
SsiI CCGC 2 cut(s) 170, 184
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 6 cut(s) 213, 352, 450, 467, 494, 550
TaqI TCGA 1 cut(s) 591
TasI AATT 2 cut(s) 31, 308
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 218
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 399, 593
TspRI CASTG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.