Rmu_sc0006133.1_g000013

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006133.1
OG0000298
Physical Location & Seq
Reverse (-)
31383 .. 33293
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006133.1_g000013.1.cds

Sequence Viewer

Length: 564 bp
atggattttgggtctctgctgggtctcagagaagctcaaataaaccttgttatggacctcccgcctcgccgccacgaaacgtcagtatacgttgcagcaccgtcaccaaagctcccacttggatctgtaatgtggtttctgttgggtgaattcatcactcttccacctactgatgggaggaggctatgctatagctttttcggacttggttatagtgttgcaactaaggaatacaaggtgctgcaaacatgcagcggcgacgaccgcaccaatgagaatgaggctcagatatacacaattggttcaggagtttggaaaagcattgggaaaactcctcaggactctgcccagttagcaccattcaatgctgttctgcatggagctcttcattggctttcctttggtggaagaacatttgagttcatacatgcatttaactttggaacagaacagttcggcacactactcccacctggttactttgaaccatttgagaagctatttaaagaatattatgaaggattatggtgtccaagagtcttggacgaaaactctggttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

187

Amino Acids

20.99

Weight (kDa)

5.35

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 87
AciI CCGC 4 cut(s) 62, 70, 255, 265
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 52, 173
AgsI TTSAA 2 cut(s) 364, 485
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 5 cut(s) 35, 112, 195, 383, 499
AluI AGCT 5 cut(s) 35, 112, 195, 383, 499
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 2 cut(s) 18, 29
AlwI GGATC 1 cut(s) 130
ApeKI GCWGC 3 cut(s) 95, 241, 252
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 96, 158
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 336
BanII GRGCYC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 3 cut(s) 107, 228, 264
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 18, 29
BfmI CTRYAG 1 cut(s) 190
BisI GCNGC 5 cut(s) 70, 96, 242, 253, 256
BlsI GCNGC 5 cut(s) 71, 97, 243, 254, 257
Bme1390I CCNGG 1 cut(s) 474
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 474
BmrI ACTGGG 1 cut(s) 343
BmuI ACTGGG 1 cut(s) 343
BsaI GGTCTC 2 cut(s) 18, 29
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 173
Bse1I ACTGG 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 52, 173
BseMII CTCAG 3 cut(s) 40, 299, 350
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 2 cut(s) 193, 324
BseXI GCAGC 3 cut(s) 107, 228, 264
BseYI CCCAGC 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 52, 173
BsmAI GTCTC 2 cut(s) 18, 29
Bso31I GGTCTC 2 cut(s) 18, 29
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 4 cut(s) 62, 70, 255, 265
BspCNI CTCAG 3 cut(s) 39, 298, 349
BspPI GGATC 1 cut(s) 130
BspQI GCTCTTC 1 cut(s) 390
BspTNI GGTCTC 2 cut(s) 18, 29
BsrI ACTGG 1 cut(s) 349
BssMI GATC 1 cut(s) 122
BssNAI GTATAC 1 cut(s) 88
Bst1107I GTATAC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 102, 453
Bst6I CTCTTC 2 cut(s) 165, 390
BstDEI CTNAG 4 cut(s) 26, 225, 285, 336
BstKTI GATC 1 cut(s) 125
BstMAI GTCTC 2 cut(s) 18, 29
BstMBI GATC 1 cut(s) 122
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 264, 353
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 2 cut(s) 252, 431
BstSCI CCNGG 1 cut(s) 472
BstSFI CTRYAG 1 cut(s) 190
BstV1I GCAGC 3 cut(s) 107, 228, 264
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BstZ17I GTATAC 1 cut(s) 88
Bsu36I CCTNAGG 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 55
CsiI ACCWGGT 1 cut(s) 472
CviAII CATG 3 cut(s) 249, 377, 428
CviJI RGCY 8 cut(s) 35, 112, 184, 195, 284, 383, 394, 499
CviKI_1 RGCY 8 cut(s) 35, 112, 184, 195, 284, 383, 394, 499
DdeI CTNAG 4 cut(s) 26, 225, 285, 336
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
DraI TTTAAA 1 cut(s) 505
Eam1104I CTCTTC 2 cut(s) 165, 390
EarI CTCTTC 2 cut(s) 165, 390
Ecl136II GAGCTC 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 385
Eco31I GGTCTC 2 cut(s) 18, 29
Eco47I GGWCC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 383
Eco81I CCTNAGG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 1 cut(s) 385
FaeI CATG 3 cut(s) 252, 380, 431
FatI CATG 3 cut(s) 248, 376, 427
FauI CCCGC 1 cut(s) 69
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 5 cut(s) 70, 96, 242, 253, 256
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 5 cut(s) 70, 96, 242, 253, 256
GluI GCNGC 5 cut(s) 70, 96, 242, 253, 256
GsaI CCCAGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 252, 380, 431
HinfI GANTC 2 cut(s) 341, 537
HphI GGTGA 2 cut(s) 96, 158
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 29, 203, 288
Hpy188III TCNNGA 2 cut(s) 306, 338
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 512
HpyCH4III ACNGT 2 cut(s) 102, 453
HpyCH4IV ACGT 2 cut(s) 80, 90
HpyCH4V TGCA 6 cut(s) 95, 221, 244, 252, 376, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 353
HpyF3I CTNAG 4 cut(s) 26, 225, 285, 336
HpySE526I ACGT 2 cut(s) 80, 90
Hsp92II CATG 3 cut(s) 252, 380, 431
Kzo9I GATC 1 cut(s) 122
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 117, 380
LpnPI CCDG 7 cut(s) 5, 291, 323, 362, 459, 486, 540
Lsp1109I GCAGC 3 cut(s) 107, 228, 264
MabI ACCWGGT 1 cut(s) 472
MaeII ACGT 2 cut(s) 80, 90
MaeIII GTNAC 2 cut(s) 102, 476
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 3 cut(s) 152, 377, 420
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 2 cut(s) 149, 297
MlyI GAGTC 2 cut(s) 335, 546
MnlI CCTC 6 cut(s) 68, 75, 171, 174, 274, 345
Mph1103I ATGCAT 1 cut(s) 433
MseI TTAA 2 cut(s) 435, 504
MspA1I CMGCKG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 474
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 264, 353
NdeII GATC 1 cut(s) 122
NlaIII CATG 3 cut(s) 252, 380, 431
NmuCI GTSAC 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 2 cut(s) 252, 431
PciSI GCTCTTC 1 cut(s) 390
PkrI GCNGC 5 cut(s) 71, 97, 243, 254, 257
PleI GAGTC 2 cut(s) 335, 545
PpsI GAGTC 2 cut(s) 335, 545
Psp124BI GAGCTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 472
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 472
PspPI GGNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 122
SacI GAGCTC 1 cut(s) 385
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 2 cut(s) 435, 504
SatI GCNGC 5 cut(s) 70, 96, 242, 253, 256
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 2 cut(s) 335, 546
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 1 cut(s) 385
SexAI ACCWGGT 1 cut(s) 472
SfcI CTRYAG 1 cut(s) 190
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 149, 297
SsiI CCGC 4 cut(s) 62, 70, 255, 265
SspI AATATT 1 cut(s) 512
SstI GAGCTC 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 2 cut(s) 102, 453
TaiI ACGT 2 cut(s) 83, 93
TasI AATT 2 cut(s) 149, 297
TauI GCSGC 2 cut(s) 72, 258
Tru1I TTAA 2 cut(s) 435, 504
Tru9I TTAA 2 cut(s) 435, 504
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 3 cut(s) 95, 241, 252
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 4 cut(s) 142, 377, 412, 531
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 149
XceI RCATGY 2 cut(s) 252, 431
XmiI GTMKAC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.