Rh1BG049900

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000298
Physical Location & Seq
Forward (+)
6897436 .. 6897918
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG049900.1

Sequence Viewer

Length: 204 bp
ATGTTCAATGATGATGATCCTCAGGTTGTAGTTTGTTATAATCAAGAAGCAAAGAGTTTCAGGGAAACTAGAGTTACCTCAACTACCTTGCCATTGATTCAACTTGCTTACTCTCCATCCTTTGTATCACTCTACAATGTTTCAAAGGGAGAGCAGGTGAAAAGGAAGGAATGGGGCTGGACTAGCTTTTTGTTGGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

67

Amino Acids

7.79

Weight (kDa)

4.96

Isoelectric Point (pI)

23.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 145
AclWI GGATC 1 cut(s) 11
AgsI TTSAA 3 cut(s) 7, 101, 144
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
AlwI GGATC 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 172, 204
AsuHPI GGTGA 1 cut(s) 169
AxyI CCTNAGG 1 cut(s) 21
BccI CCATC 1 cut(s) 124
BfaI CTAG 2 cut(s) 69, 183
BfuAI ACCTGC 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bse21I CCTNAGG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 15
BseGI GGATG 2 cut(s) 116, 202
BseJI GATNNNNATC 1 cut(s) 15
BseMII CTCAG 1 cut(s) 35
Bsp143I GATC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 1 cut(s) 11
BssMI GATC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 2 cut(s) 116, 202
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 183
Bsu36I CCTNAGG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 116, 202
BveI ACCTGC 1 cut(s) 145
CviJI RGCY 2 cut(s) 177, 186
CviKI_1 RGCY 2 cut(s) 177, 186
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eco81I CCTNAGG 1 cut(s) 21
FaiI YATR 1 cut(s) 39
FokI GGATG 1 cut(s) 103
FspBI CTAG 2 cut(s) 69, 183
HinfI GANTC 1 cut(s) 97
HphI GGTGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 21
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 8, 46, 140, 163
MaeI CTAG 2 cut(s) 69, 183
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 2 cut(s) 30, 88
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 1 cut(s) 16
PaqCI CACCTGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 97
PsiI TTATAA 1 cut(s) 39
Sau3AI GATC 1 cut(s) 16
SetI ASST 5 cut(s) 27, 80, 89, 159, 188
SgeI CNNG 9 cut(s) 35, 56, 73, 81, 100, 116, 167, 190, 195
SspMI CTAG 2 cut(s) 69, 183
TfiI GAWTC 1 cut(s) 97
XspI CTAG 2 cut(s) 69, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.