FvH4_4g16630

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000298
Physical Location & Seq
Forward (+)
20496767 .. 20498691
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16630.t2

Sequence Viewer

Length: 1260 bp
ATGAATACGAGGAAAAGGAAAAAATCAAACTGGGAACTCAAAGGTGCCTTCGATATCCAGGAACTTCCTCAAGTTTTAGTACTAGACATTCTATCAAGGCTTTCCATCAAGGCCCTCTACAGTTGCAGAAGCGTTTGTAAAGACTGGCTTCATATAATTCATGGCTCTGAATTTGCTCGCATACAACTTCGAAGACCACCCATCAGCATCTTGATCAAGACATCTCAGCGTGCAAGAGCACAAAGGAAATTAGATTTGATCCAAATAGCTGCAGGGTCAGGTATGCGAGTCGAGAGAATGAGGTTTTCTCCCATGAATGTTCTACCTGTTCATCCTGTTGCTGCAGTTGAGTTGATAAACTCAAGCAATGGTTTGCTTTGTATACGTCAGTGCATGAATTATAGATTCTTGTACGTGTGCAACCCCATTTTAGGAGAGTACATTCGCATTCCTGATTATAATTCCTTGGTCGATTTTGTTGCACTTGGTTTTAGCACAAGGAACAATGAATACAAGATCCTGCAAACAAGTTACTATAGCGACTATGACTTTGAGCTTGATGCTATGATATACACCATTGGTAAAAGCAAAGTTTGGAGAAGTATTGGAAAGCGTCCAAGATCCTGTAGAGGTGGCCGAATACCATTCAATTCCTTTCTGCATGGAGGTATTCATTGGATATCCGATCATGACAATCCTCCTTCATCTATACAATGTTTCGACTTTGAAAGAGAAGAGTTTCGACAACTACAACTTCCCTTGCTCAATAAATATAATGGTTTGAGGTTGGGAGTCTTGAAAGGTAGTCTATATCTATGTGTGTTTGAAGGTGATGATAGGAAATGTGACTTGTGGGTTATGAAGAATTATGGTGTTCAACAATCTTGGACGAAATTTTGTGTCATCGAACACATGTATCCCAGTGCCCTGAATATGTACGAGCCAGTCATGTTCTTGAGTGATGTGGAAATCCTAATGGCCTCTGACAAGTTTGTGCTGAGCTATAATCTAGTGACAAAGCGTCTCGAAAAAACTAGAATTCTTCGAACTCGGTCTCAGTTTCTGGCATTTGGTTACTATCCTTGCTTTGTTTCACTCCATGATGTTGCAAATGGAGAGAAGGTGCAAAGGATTAGAAACAATGACAAATTTGAAAGCCTGCTTTCTGAAGGGAGGAACGTTTACGCTGATCTGATCAATTCATCATTCATCGAAAGGTTAATTAAGGATGTGCTAGCTAGACTAGGGTTTAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

420

Amino Acids

48.74

Weight (kDa)

9.43

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 54 2.5e-07 F-box-like
F-box PF00646 19 - 58 1.9e-07 F-box domain
b-prop_At3g26010-like PF24750 116 - 340 1.6e-08 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 117 - 353 3.2e-19 F-box associated beta propeller domain
FBA_1 PF07734 119 - 320 4.6e-25 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AccB1I GGYRCC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 382
AclI AACGTT 1 cut(s) 1179
AclWI GGATC 3 cut(s) 253, 511, 615
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 4 cut(s) 170, 893, 1038, 1148
AcuI CTGAAG 1 cut(s) 1188
AfaI GTAC 4 cut(s) 81, 413, 440, 938
AfiI CCNNNNNNNGG 1 cut(s) 431
AflIII ACRYGT 2 cut(s) 414, 912
AgsI TTSAA 6 cut(s) 649, 728, 799, 827, 878, 1154
AhdI GACNNNNNGTC 1 cut(s) 1020
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 4 cut(s) 269, 556, 1002, 1238
AluI AGCT 4 cut(s) 269, 556, 1002, 1238
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 2 cut(s) 1028, 1059
AlwI GGATC 3 cut(s) 253, 511, 615
AlwNI CAGNNNCTG 1 cut(s) 1063
AoxI GGCC 3 cut(s) 111, 634, 978
ApeKI GCWGC 2 cut(s) 269, 341
ApoI RAATTY 4 cut(s) 170, 893, 1038, 1148
ArsI GACNNNNNNTTYG 2 cut(s) 533, 565
Asp700I GAANNNNTTC 1 cut(s) 738
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 842
AsuII TTCGAA 2 cut(s) 190, 1045
AsuNHI GCTAGC 1 cut(s) 1234
BaeGI GKGCMC 1 cut(s) 928
BaeI ACNNNNGTAYC 2 cut(s) 899, 932
BanI GGYRCC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 256, 328
BccI CCATC 2 cut(s) 113, 209
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 1 cut(s) 59
BciVI GTATCC 1 cut(s) 927
BclI TGATCA 2 cut(s) 213, 1194
BcoDI GTCTC 2 cut(s) 1028, 1059
BfaI CTAG 6 cut(s) 83, 1010, 1035, 1235, 1239, 1244
BfmI CTRYAG 5 cut(s) 118, 270, 342, 535, 625
BfuI GTATCC 1 cut(s) 927
BisI GCNGC 2 cut(s) 270, 342
BlpI GCTNAGC 1 cut(s) 998
BlsI GCNGC 2 cut(s) 271, 343
BmcAI AGTACT 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 59
BmeRI GACNNNNNGTC 1 cut(s) 1020
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 59
BmrI ACTGGG 2 cut(s) 40, 915
BmsI GCATC 2 cut(s) 216, 550
BmtI GCTAGC 1 cut(s) 1238
BmuI ACTGGG 2 cut(s) 40, 915
BpiI GAAGAC 1 cut(s) 199
BplI GAGNNNNNCTC 2 cut(s) 292, 324
Bpu1102I GCTNAGC 1 cut(s) 998
Bpu14I TTCGAA 2 cut(s) 190, 1045
BpuEI CTTGAG 3 cut(s) 54, 346, 976
BsaAI YACGTR 1 cut(s) 415
BsaI GGTCTC 1 cut(s) 1059
BsaJI CCNNGG 1 cut(s) 465
BsaXI ACNNNNNCTCC 2 cut(s) 1107, 1137
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 4 cut(s) 35, 149, 921, 944
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 331, 1234
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 3 cut(s) 239, 989, 1070
BseNI ACTGG 4 cut(s) 35, 149, 921, 944
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 2 cut(s) 256, 328
BshFI GGCC 3 cut(s) 113, 636, 980
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 2 cut(s) 1028, 1059
BsmBI CGTCTC 1 cut(s) 1028
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 3 cut(s) 113, 636, 980
Bso31I GGTCTC 1 cut(s) 1059
Bsp119I TTCGAA 2 cut(s) 190, 1045
Bsp1286I GDGCHC 2 cut(s) 241, 928
Bsp143I GATC 7 cut(s) 213, 258, 516, 620, 685, 1189, 1194
Bsp1720I GCTNAGC 1 cut(s) 998
BspANI GGCC 3 cut(s) 113, 636, 980
BspCNI CTCAG 3 cut(s) 238, 990, 1069
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 46
BspMAI CTGCAG 2 cut(s) 274, 346
BspOI GCTAGC 1 cut(s) 1238
BspPI GGATC 3 cut(s) 253, 511, 615
BspT104I TTCGAA 2 cut(s) 190, 1045
BspT107I GGYRCC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 1059
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 4 cut(s) 35, 149, 921, 944
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 7 cut(s) 213, 258, 516, 620, 685, 1189, 1194
BssNAI GTATAC 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 465
Bst1107I GTATAC 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 729
BstBAI YACGTR 1 cut(s) 415
BstBI TTCGAA 2 cut(s) 190, 1045
BstC8I GCNNGC 4 cut(s) 178, 231, 1160, 1236
BstDEI CTNAG 3 cut(s) 225, 998, 1056
BstF5I GGATG 2 cut(s) 331, 1234
BstKTI GATC 7 cut(s) 216, 261, 519, 623, 688, 1192, 1197
BstMAI GTCTC 2 cut(s) 1028, 1059
BstMBI GATC 7 cut(s) 213, 258, 516, 620, 685, 1189, 1194
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 916
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 5 cut(s) 118, 270, 342, 535, 625
BstSLI GKGCMC 1 cut(s) 928
BstV1I GCAGC 2 cut(s) 256, 328
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 2 cut(s) 516, 620
BstYI RGATCY 2 cut(s) 516, 620
BstZ17I GTATAC 1 cut(s) 383
BsuI GTATCC 1 cut(s) 927
BsuRI GGCC 3 cut(s) 113, 636, 980
BtsCI GGATG 2 cut(s) 331, 1234
BtsIMutI CAGTG 2 cut(s) 395, 928
Cac8I GCNNGC 4 cut(s) 178, 231, 1160, 1236
CaiI CAGNNNCTG 1 cut(s) 1063
CciI TCATGA 1 cut(s) 688
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 2 cut(s) 602, 1010
Csp6I GTAC 4 cut(s) 80, 412, 439, 937
CviAII CATG 8 cut(s) 161, 313, 394, 662, 689, 913, 949, 1100
CviQI GTAC 4 cut(s) 80, 412, 439, 937
DdeI CTNAG 3 cut(s) 225, 998, 1056
DpnI GATC 7 cut(s) 215, 260, 518, 622, 687, 1191, 1196
DpnII GATC 7 cut(s) 213, 258, 516, 620, 685, 1189, 1194
DriI GACNNNNNGTC 1 cut(s) 1020
EaeI YGGCCR 1 cut(s) 634
Eam1104I CTCTTC 1 cut(s) 729
Eam1105I GACNNNNNGTC 1 cut(s) 1020
EarI CTCTTC 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 1059
Eco32I GATATC 2 cut(s) 55, 681
Eco57I CTGAAG 1 cut(s) 1188
EcoO109I RGGNCCY 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 1038
EcoRII CCWGG 1 cut(s) 57
EcoRV GATATC 2 cut(s) 55, 681
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 1028
FaeI CATG 8 cut(s) 164, 316, 397, 665, 692, 916, 952, 1103
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 8 cut(s) 160, 312, 393, 661, 688, 912, 948, 1099
FbaI TGATCA 2 cut(s) 213, 1194
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 270, 342
FokI GGATG 2 cut(s) 318, 1241
Fsp4HI GCNGC 2 cut(s) 270, 342
FspBI CTAG 6 cut(s) 83, 1010, 1035, 1235, 1239, 1244
GluI GCNGC 2 cut(s) 270, 342
HaeIII GGCC 3 cut(s) 113, 636, 980
HgaI GACGC 2 cut(s) 602, 1010
Hin1II CATG 8 cut(s) 164, 316, 397, 665, 692, 916, 952, 1103
HinfI GANTC 3 cut(s) 288, 405, 792
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 2 cut(s) 383, 1183
Hpy188I TCNGA 5 cut(s) 169, 685, 985, 1168, 1194
Hpy188III TCNNGA 8 cut(s) 211, 217, 292, 452, 689, 796, 955, 1025
Hpy8I GTNNAC 2 cut(s) 383, 1183
HpyAV CCTTC 5 cut(s) 58, 711, 821, 1114, 1163
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 3 cut(s) 385, 414, 1179
HpyF3I CTNAG 3 cut(s) 225, 998, 1056
HpySE526I ACGT 3 cut(s) 385, 414, 1179
Hsp92II CATG 8 cut(s) 164, 316, 397, 665, 692, 916, 952, 1103
Ksp22I TGATCA 2 cut(s) 213, 1194
Kzo9I GATC 7 cut(s) 213, 258, 516, 620, 685, 1189, 1194
Lsp1109I GCAGC 2 cut(s) 256, 328
LweI GCATC 2 cut(s) 216, 550
MaeI CTAG 6 cut(s) 83, 1010, 1035, 1235, 1239, 1244
MaeII ACGT 3 cut(s) 385, 414, 1179
MaeIII GTNAC 4 cut(s) 530, 845, 1012, 1073
MalI GATC 7 cut(s) 215, 260, 518, 622, 687, 1191, 1196
MboI GATC 7 cut(s) 213, 258, 516, 620, 685, 1189, 1194
MboII GAAGA 4 cut(s) 204, 746, 874, 1034
MflI RGATCY 2 cut(s) 516, 620
MhlI GDGCHC 2 cut(s) 241, 928
MlyI GAGTC 2 cut(s) 297, 801
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 2 cut(s) 1220, 1224
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 1 cut(s) 59
NdeII GATC 7 cut(s) 213, 258, 516, 620, 685, 1189, 1194
NheI GCTAGC 1 cut(s) 1234
NlaIII CATG 8 cut(s) 164, 316, 397, 665, 692, 916, 952, 1103
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 2 cut(s) 845, 1012
NspI RCATGY 1 cut(s) 916
NspV TTCGAA 2 cut(s) 190, 1045
PacI TTAATTAA 1 cut(s) 1224
PagI TCATGA 1 cut(s) 688
PciI ACATGT 1 cut(s) 912
PctI GAATGC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 1 cut(s) 405
PfoI TCCNGGA 1 cut(s) 57
PkrI GCNGC 2 cut(s) 271, 343
PleI GAGTC 2 cut(s) 296, 800
PpsI GAGTC 2 cut(s) 296, 800
Ppu21I YACGTR 1 cut(s) 415
PscI ACATGT 1 cut(s) 912
PsiI TTATAA 1 cut(s) 459
Psp1406I AACGTT 1 cut(s) 1179
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 494, 526
PstI CTGCAG 2 cut(s) 274, 346
PstNI CAGNNNCTG 1 cut(s) 1063
PsuI RGATCY 2 cut(s) 516, 620
RsaI GTAC 4 cut(s) 81, 413, 440, 938
RsaNI GTAC 4 cut(s) 80, 412, 439, 937
SaqAI TTAA 2 cut(s) 1220, 1224
SatI GCNGC 2 cut(s) 270, 342
Sau3AI GATC 7 cut(s) 213, 258, 516, 620, 685, 1189, 1194
Sau96I GGNCC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 81
SchI GAGTC 2 cut(s) 297, 801
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 2 cut(s) 241, 928
SfaNI GCATC 2 cut(s) 216, 550
SfcI CTRYAG 5 cut(s) 118, 270, 342, 535, 625
SfuI TTCGAA 2 cut(s) 190, 1045
SmlI CTYRAG 3 cut(s) 69, 361, 955
SmoI CTYRAG 3 cut(s) 69, 361, 955
SspMI CTAG 6 cut(s) 83, 1010, 1035, 1235, 1239, 1244
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 3 cut(s) 388, 417, 1182
TaqII GACCGA 1 cut(s) 1041
TatI WGTACW 2 cut(s) 79, 438
TfiI GAWTC 1 cut(s) 405
Tru1I TTAA 2 cut(s) 1220, 1224
Tru9I TTAA 2 cut(s) 1220, 1224
TscAI CASTG 2 cut(s) 395, 928
TseFI GTSAC 2 cut(s) 845, 1012
TseI GCWGC 2 cut(s) 269, 341
Tsp45I GTSAC 2 cut(s) 845, 1012
TspRI CASTG 2 cut(s) 395, 928
XapI RAATTY 4 cut(s) 170, 893, 1038, 1148
XceI RCATGY 1 cut(s) 916
XmiI GTMKAC 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 6 cut(s) 83, 1010, 1035, 1235, 1239, 1244
ZrmI AGTACT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.