Rh4BG338800

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000298
Physical Location & Seq
Reverse (-)
50129277 .. 50129750
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG338800.1

Sequence Viewer

Length: 474 bp
ATGAGACGCAAGAACAGAAAGATCAACAACGTTGAGCAACTAGAAGAAGAAGAAGAATGGCAACCCAAAGGTCCTTGCAGGTTTCATGAGCTTCCGCAGGGTTTAGTCATGGACATTCTCTCCAGGCTCTCTCTTAAAACCCTCTTCAAATGCAGGTGTGTTTGCAAGTCCTGGCTTTTCATCACAGCGGACCCTCATTTTACTCATCTCTGCCTTTCAAGAGTACCCATTGGTATCTTGATCAAGACCATTCCCATCAATAGGAATTCAAGGATTATTGATTTGACCCAAATTGAACAATCTACTGGATCTCACTTTCAGCTTGAGAAAGTGAGATTTAGTCCCAAATATAGCCTACCCCCAATTTCTGATTTTGATCTGATCAACTCCTGCAATGGCTTACTTCTTTTGGTTGGCATTGGAATAGACGACCCCTTTTATGTTTGCAATCCAGTTTCGGGTGAGTACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

157

Amino Acids

18.08

Weight (kDa)

8.18

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 68 3.2e-09 F-box domain
F-box-like PF12937 29 - 72 4.9e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 144
Acc36I ACCTGC 2 cut(s) 69, 144
AciI CCGC 2 cut(s) 95, 188
AclI AACGTT 1 cut(s) 30
AclWI GGATC 1 cut(s) 316
AcsI RAATTY 1 cut(s) 265
AfaI GTAC 2 cut(s) 225, 467
AfiI CCNNNNNNNGG 2 cut(s) 261, 458
AgsI TTSAA 4 cut(s) 148, 219, 270, 296
AjnI CCWGG 2 cut(s) 122, 170
AluBI AGCT 2 cut(s) 91, 322
AluI AGCT 2 cut(s) 91, 322
AlwI GGATC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 71, 190
AsuHPI GGTGA 1 cut(s) 473
AvaII GGWCC 2 cut(s) 71, 190
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 2 cut(s) 124, 172
BclI TGATCA 2 cut(s) 240, 381
BfaI CTAG 1 cut(s) 41
BfuAI ACCTGC 2 cut(s) 69, 144
Bme1390I CCNGG 2 cut(s) 124, 172
Bme18I GGWCC 2 cut(s) 71, 190
BmgT120I GGNCC 2 cut(s) 71, 190
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 124, 172
BpmI CTGGAG 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 344
BsaBI GATNNNNATC 1 cut(s) 375
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 458
Bse1I ACTGG 2 cut(s) 310, 452
Bse3DI GCAATG 1 cut(s) 400
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 2 cut(s) 124, 172
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 2 cut(s) 261, 458
BseMI GCAATG 1 cut(s) 400
BseNI ACTGG 2 cut(s) 310, 452
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 261, 458
BsmFI GGGAC 1 cut(s) 327
Bsp143I GATC 5 cut(s) 21, 240, 308, 376, 381
BspACI CCGC 2 cut(s) 95, 188
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 192
BspMI ACCTGC 2 cut(s) 69, 144
BspPI GGATC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 400
BsrI ACTGG 2 cut(s) 310, 452
BssMI GATC 5 cut(s) 21, 240, 308, 376, 381
Bst2UI CCWGG 2 cut(s) 124, 172
Bst6I CTCTTC 1 cut(s) 149
BstKTI GATC 5 cut(s) 24, 243, 311, 379, 384
BstMBI GATC 5 cut(s) 21, 240, 308, 376, 381
BstNI CCWGG 2 cut(s) 124, 172
BstSCI CCNGG 2 cut(s) 122, 170
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BveI ACCTGC 2 cut(s) 69, 144
CciI TCATGA 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 71, 190
CseI GACGC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 224, 466
CviAII CATG 2 cut(s) 86, 109
CviJI RGCY 6 cut(s) 91, 127, 175, 322, 354, 399
CviKI_1 RGCY 6 cut(s) 91, 127, 175, 322, 354, 399
CviQI GTAC 2 cut(s) 224, 466
DpnI GATC 5 cut(s) 23, 242, 310, 378, 383
DpnII GATC 5 cut(s) 21, 240, 308, 376, 381
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 71, 190
EcoO109I RGGNCCY 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 122, 170
FaeI CATG 2 cut(s) 89, 112
FaiI YATR 4 cut(s) 87, 110, 351, 441
FaqI GGGAC 1 cut(s) 327
FatI CATG 2 cut(s) 85, 108
FbaI TGATCA 2 cut(s) 240, 381
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 106
HgaI GACGC 1 cut(s) 15
Hin1II CATG 2 cut(s) 89, 112
HphI GGTGA 1 cut(s) 473
Hpy188I TCNGA 3 cut(s) 370, 381, 473
Hpy188III TCNNGA 4 cut(s) 86, 219, 238, 244
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 5 cut(s) 78, 153, 165, 393, 447
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 89, 112
Ksp22I TGATCA 2 cut(s) 240, 381
Kzo9I GATC 5 cut(s) 21, 240, 308, 376, 381
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 30
MalI GATC 5 cut(s) 23, 242, 310, 378, 383
MboI GATC 5 cut(s) 21, 240, 308, 376, 381
MboII GAAGA 5 cut(s) 56, 59, 62, 65, 136
MflI RGATCY 1 cut(s) 308
MluCI AATT 3 cut(s) 265, 291, 363
MnlI CCTC 2 cut(s) 152, 204
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 124, 172
MvaI CCWGG 2 cut(s) 124, 172
NdeII GATC 5 cut(s) 21, 240, 308, 376, 381
NlaIII CATG 2 cut(s) 89, 112
NlaIV GGNNCC 1 cut(s) 192
PagI TCATGA 1 cut(s) 85
PaqCI CACCTGC 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 71
Psp1406I AACGTT 1 cut(s) 30
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 122, 170
PspGI CCWGG 2 cut(s) 122, 170
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 71, 190
PspPPI RGGWCCY 1 cut(s) 71
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 2 cut(s) 225, 467
RsaNI GTAC 2 cut(s) 224, 466
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 5 cut(s) 21, 240, 308, 376, 381
Sau96I GGNCC 2 cut(s) 71, 190
ScrFI CCNGG 2 cut(s) 124, 172
SetI ASST 6 cut(s) 33, 73, 83, 93, 158, 324
SinI GGWCC 2 cut(s) 71, 190
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 3 cut(s) 265, 291, 363
SsiI CCGC 2 cut(s) 95, 188
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 122, 170
TaiI ACGT 1 cut(s) 33
TasI AATT 3 cut(s) 265, 291, 363
TatI WGTACW 1 cut(s) 465
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 74, 169
VpaK11BI GGWCC 2 cut(s) 71, 190
XapI RAATTY 1 cut(s) 265
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.