Prupe.1G147000_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000298
Physical Location & Seq
Reverse (-)
11553641 .. 11556204
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G147000.1

Sequence Viewer

Length: 1365 bp
ATGGCAAGAGAAACGAAAGGAAATCCTATGAATCCAAGAAAAAAAGTGGCAACCAGAGCAGCTATGAGCAGCAAAAACAAAGAGCAATCAGGGGAACAATGCCAACCCAAAGCTCCTTGCAGCAAATTCCAACAACTTCCACAGGCTTTGGTCTTGGAAATCCTCTCAAGCCTCTCCATCAAGACCCTCTTGAATTGTAGGTGCGTGTGCAAAGACTGGCTTTCTATAATTTCTGACCCTCAATTTACTAAGCTCCACTCTTCAAGATCACCCGTTGGCATCTTGATCAAGACCTACCCCCCTATAAGAAAATCAAGGAAACTTGATTTTACCCATATAGAAGATTGTGCTGGTTCTGATTTGCTGCTTGAGAAAATAAGGTTTAATCCCCAAAACAGCCTACCTATTGGGGCCATGCCTGAATTTCGTTTGATAAACTCATGTAATGGTCTGCTCTGTTTGTCTGGACCCAATAGAGATTACCCATGTTTTGTGTGCAATCCAATTTTGGGTGAGCACATCAGCATCCCTCCTACCAATCTAAGTAGAAACAAGTGCTTTTTTGTTGGGCTTGGTTTTAGCAATGGGACCAATGAGTACAAGTTGTTGCAAATGACCAATGGCACTGAGGCTGAGATATACACCATTGGTACAGGAGTGTGGAGAAGTGTTGGAAATGCTCCTGGGGATATTGATCAGTTACCCTTCAATCCTTTTCTGCATGGAGCTCTTCATTGGGTATCCTATAGTAGCACAGTTCCTGATTTTATACATTCTTTCGACTTCGAAAGAGAACAATTTCGACCACTGCCTGTGCCTAGCTTACTGGGAAATCGACTTTCAGATTGTTATATACTGGAAGTGGTAGGTGGGCGTCTCTGTTTATCTGTGTTTGATGATGATTATAGCAAATTCGACATGTGGGTTATGAAGGAGTATGGTGTTCAAGAGTCTTGGACTAAAATTCTTGTTTTCGGAAACTTGTATGAGTGTCCAGAGGAACGAATCTGTCATGTGTATGAACCAATTATGTTTTTGAGGAATGGGGAAATCCTGCTGTTGTTCAATAATTGTGCTGTTGTTTGTTATAATCAAGAAACAAAGAGTTTCAGGGAAATAAGAATTACTTGGACTCGGTCACCATTTGAGGCAATTGCTTACAGTCCATCCTTTGTTTCCCTCTACAATGTTTCAAAAGGAGAAGAGGTGAAGAGGGTACGACGCAGTAAGAAATCGGGTAAGAAATCTGGAAAGCTGCTTTTGGAAGGGAGTTATGAGTGTGCCGGCTCTGGTATGCCACCCCGCAAGTCGACAAAACTTAACTCAGGCTATGGATGCCCTGTTTTTGAGGAGGGTCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

455

Amino Acids

51.14

Weight (kDa)

8.67

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1089
AccI GTMKAC 1 cut(s) 1310
AciI CCGC 1 cut(s) 1303
AcsI RAATTY 4 cut(s) 125, 422, 911, 963
AcyI GRCGYC 1 cut(s) 874
AfaI GTAC 3 cut(s) 599, 652, 1218
AfiI CCNNNNNNNGG 1 cut(s) 509
AflIII ACRYGT 1 cut(s) 918
AgsI TTSAA 6 cut(s) 193, 264, 709, 947, 1066, 1194
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 6 cut(s) 62, 113, 253, 728, 822, 1255
AluI AGCT 6 cut(s) 62, 113, 253, 728, 822, 1255
Alw21I GWGCWC 2 cut(s) 519, 730
Alw26I GTCTC 1 cut(s) 881
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 5 cut(s) 59, 69, 120, 364, 1255
ApoI RAATTY 4 cut(s) 125, 422, 911, 963
Asp700I GAANNNNTTC 1 cut(s) 798
AspS9I GGNCC 3 cut(s) 411, 467, 588
AsuHPI GGTGA 4 cut(s) 261, 524, 1131, 1219
AsuII TTCGAA 1 cut(s) 786
AvaII GGWCC 2 cut(s) 467, 588
BaeI ACNNNNGTAYC 2 cut(s) 642, 675
BanII GRGCYC 1 cut(s) 730
BbsI GAAGAC 1 cut(s) 1349
Bbv12I GWGCWC 2 cut(s) 519, 730
BbvI GCAGC 5 cut(s) 71, 81, 132, 351, 1242
BccI CCATC 2 cut(s) 185, 1174
BciT130I CCWGG 1 cut(s) 684
BciVI GTATCC 1 cut(s) 751
BclI TGATCA 2 cut(s) 285, 694
BcoDI GTCTC 1 cut(s) 881
BfaI CTAG 1 cut(s) 819
BfmI CTRYAG 1 cut(s) 745
BfuI GTATCC 1 cut(s) 751
BisI GCNGC 5 cut(s) 60, 70, 121, 365, 1256
BlsI GCNGC 5 cut(s) 61, 71, 122, 366, 1257
Bme1390I CCNGG 1 cut(s) 684
Bme18I GGWCC 2 cut(s) 467, 588
BmgT120I GGNCC 3 cut(s) 411, 467, 588
BmiI GGNNCC 3 cut(s) 412, 469, 589
BmrFI CCNGG 1 cut(s) 684
BmrI ACTGGG 1 cut(s) 836
BmsI GCATC 3 cut(s) 288, 534, 1325
BmuI ACTGGG 1 cut(s) 836
BpiI GAAGAC 1 cut(s) 1349
Bpu14I TTCGAA 1 cut(s) 786
BpuEI CTTGAG 2 cut(s) 151, 389
BsaBI GATNNNNATC 1 cut(s) 693
BsaHI GRCGYC 1 cut(s) 874
BsaJI CCNNGG 1 cut(s) 683
BsaXI ACNNNNNCTCC 2 cut(s) 1191, 1221
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse118I RCCGGY 1 cut(s) 1283
Bse1I ACTGG 3 cut(s) 221, 831, 861
Bse3DI GCAATG 1 cut(s) 589
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 1 cut(s) 683
BseGI GGATG 3 cut(s) 525, 1166, 1340
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 3 cut(s) 618, 624, 1338
BseNI ACTGG 3 cut(s) 221, 831, 861
BseRI GAGGAG 1 cut(s) 1364
BseXI GCAGC 5 cut(s) 71, 81, 132, 351, 1242
BshFI GGCC 1 cut(s) 413
BsiHKAI GWGCWC 2 cut(s) 519, 730
BsiSI CCGG 1 cut(s) 1284
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 1 cut(s) 881
BsmBI CGTCTC 1 cut(s) 881
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 1 cut(s) 413
Bsp119I TTCGAA 1 cut(s) 786
Bsp1286I GDGCHC 2 cut(s) 519, 730
Bsp143I GATC 3 cut(s) 266, 285, 694
BspACI CCGC 1 cut(s) 1303
BspANI GGCC 1 cut(s) 413
BspCNI CTCAG 3 cut(s) 619, 625, 1337
BspLI GGNNCC 3 cut(s) 412, 469, 589
BspQI GCTCTTC 1 cut(s) 735
BspT104I TTCGAA 1 cut(s) 786
BsrDI GCAATG 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 1283
BsrI ACTGG 3 cut(s) 221, 831, 861
BssAI RCCGGY 1 cut(s) 1283
BssECI CCNNGG 1 cut(s) 683
BssMI GATC 3 cut(s) 266, 285, 694
BssNI GRCGYC 1 cut(s) 874
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 2 cut(s) 757, 1163
Bst6I CTCTTC 4 cut(s) 265, 735, 1197, 1205
BstACI GRCGYC 1 cut(s) 874
BstBI TTCGAA 1 cut(s) 786
BstC8I GCNNGC 1 cut(s) 1285
BstDEI CTNAG 5 cut(s) 249, 542, 627, 633, 1324
BstEII GGTNACC 1 cut(s) 1137
BstF5I GGATG 3 cut(s) 525, 1166, 1340
BstKTI GATC 3 cut(s) 269, 288, 697
BstMAI GTCTC 1 cut(s) 881
BstMBI GATC 3 cut(s) 266, 285, 694
BstMWI GCNNNNNNNGC 2 cut(s) 56, 1335
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 922
BstPI GGTNACC 1 cut(s) 1137
BstSCI CCNGG 1 cut(s) 682
BstSFI CTRYAG 1 cut(s) 745
BstV1I GCAGC 5 cut(s) 71, 81, 132, 351, 1242
BstV2I GAAGAC 1 cut(s) 1349
BsuI GTATCC 1 cut(s) 751
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 3 cut(s) 525, 1166, 1340
BtsI GCAGTG 1 cut(s) 806
BtsIMutI CAGTG 2 cut(s) 624, 806
Cac8I GCNNGC 1 cut(s) 1285
CaiI CAGNNNCTG 1 cut(s) 761
Cfr10I RCCGGY 1 cut(s) 1283
Cfr13I GGNCC 3 cut(s) 411, 467, 588
CseI GACGC 2 cut(s) 863, 1230
Csp6I GTAC 3 cut(s) 598, 651, 1217
CspCI CAANNNNNGTGG 2 cut(s) 129, 164
CviAII CATG 6 cut(s) 415, 441, 486, 722, 919, 1013
CviQI GTAC 3 cut(s) 598, 651, 1217
DdeI CTNAG 5 cut(s) 249, 542, 627, 633, 1324
DpnI GATC 3 cut(s) 268, 287, 696
DpnII GATC 3 cut(s) 266, 285, 694
Eam1104I CTCTTC 4 cut(s) 265, 735, 1197, 1205
EarI CTCTTC 4 cut(s) 265, 735, 1197, 1205
Ecl136II GAGCTC 1 cut(s) 728
Eco24I GRGCYC 1 cut(s) 730
Eco47I GGWCC 2 cut(s) 467, 588
Eco53kI GAGCTC 1 cut(s) 728
Eco91I GGTNACC 1 cut(s) 1137
EcoICRI GAGCTC 1 cut(s) 728
EcoO65I GGTNACC 1 cut(s) 1137
EcoRII CCWGG 1 cut(s) 682
EcoT38I GRGCYC 1 cut(s) 730
Esp3I CGTCTC 1 cut(s) 881
FaeI CATG 6 cut(s) 418, 444, 489, 725, 922, 1016
FalI AAGNNNNNCTT 6 cut(s) 173, 205, 204, 236, 1111, 1143
FaqI GGGAC 1 cut(s) 601
FatI CATG 6 cut(s) 414, 440, 485, 721, 918, 1012
FauI CCCGC 1 cut(s) 1310
FbaI TGATCA 2 cut(s) 285, 694
FblI GTMKAC 1 cut(s) 1310
Fnu4HI GCNGC 5 cut(s) 60, 70, 121, 365, 1256
FokI GGATG 3 cut(s) 512, 1153, 1347
FriOI GRGCYC 1 cut(s) 730
Fsp4HI GCNGC 5 cut(s) 60, 70, 121, 365, 1256
FspBI CTAG 1 cut(s) 819
GluI GCNGC 5 cut(s) 60, 70, 121, 365, 1256
HaeIII GGCC 1 cut(s) 413
HapII CCGG 1 cut(s) 1284
HgaI GACGC 2 cut(s) 863, 1230
Hin1I GRCGYC 1 cut(s) 874
Hin1II CATG 6 cut(s) 418, 444, 489, 725, 922, 1016
HincII GTYRAC 1 cut(s) 1311
HindII GTYRAC 1 cut(s) 1311
HinfI GANTC 4 cut(s) 31, 950, 1005, 1132
HpaII CCGG 1 cut(s) 1284
HphI GGTGA 4 cut(s) 261, 524, 1131, 1219
Hpy166II GTNNAC 1 cut(s) 1311
Hpy188I TCNGA 4 cut(s) 235, 358, 844, 977
Hpy8I GTNNAC 1 cut(s) 1311
Hpy99I CGWCG 1 cut(s) 1224
HpyAV CCTTC 3 cut(s) 715, 925, 1259
HpyCH4III ACNGT 2 cut(s) 757, 1163
HpyCH4V TGCA 5 cut(s) 120, 210, 498, 610, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 1335
HpyF3I CTNAG 5 cut(s) 249, 542, 627, 633, 1324
Hsp92I GRCGYC 1 cut(s) 874
Hsp92II CATG 6 cut(s) 418, 444, 489, 725, 922, 1016
KroI GCCGGC 1 cut(s) 1283
KroNI GCCGGC 1 cut(s) 1285
Ksp22I TGATCA 2 cut(s) 285, 694
Kzo9I GATC 3 cut(s) 266, 285, 694
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 4 cut(s) 118, 258, 685, 725
Lsp1109I GCAGC 5 cut(s) 71, 81, 132, 351, 1242
LweI GCATC 3 cut(s) 288, 534, 1325
MaeI CTAG 1 cut(s) 819
MaeIII GTNAC 2 cut(s) 699, 1137
MalI GATC 3 cut(s) 268, 287, 696
MboI GATC 3 cut(s) 266, 285, 694
MboII GAAGA 6 cut(s) 252, 353, 722, 1214, 1222, 1349
MfeI CAATTG 1 cut(s) 1152
MhlI GDGCHC 2 cut(s) 519, 730
MlyI GAGTC 2 cut(s) 959, 1126
MmeI TCCRAC 2 cut(s) 154, 652
MroNI GCCGGC 1 cut(s) 1283
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 2 cut(s) 384, 1320
MslI CAYNNNNRTG 1 cut(s) 1017
MspI CCGG 1 cut(s) 1284
MspR9I CCNGG 1 cut(s) 684
MunI CAATTG 1 cut(s) 1152
MvaI CCWGG 1 cut(s) 684
MwoI GCNNNNNNNGC 2 cut(s) 56, 1335
NaeI GCCGGC 1 cut(s) 1285
NdeII GATC 3 cut(s) 266, 285, 694
NgoMIV GCCGGC 1 cut(s) 1283
NlaIII CATG 6 cut(s) 418, 444, 489, 725, 922, 1016
NlaIV GGNNCC 3 cut(s) 412, 469, 589
NmuCI GTSAC 1 cut(s) 1137
NspI RCATGY 1 cut(s) 922
NspV TTCGAA 1 cut(s) 786
PciI ACATGT 1 cut(s) 918
PciSI GCTCTTC 1 cut(s) 735
PdiI GCCGGC 1 cut(s) 1285
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 2 cut(s) 31, 1005
PflFI GACNNNGTC 1 cut(s) 1135
PkrI GCNGC 5 cut(s) 61, 71, 122, 366, 1257
PleI GAGTC 2 cut(s) 958, 1126
PpsI GAGTC 2 cut(s) 958, 1126
PscI ACATGT 1 cut(s) 918
PsiI TTATAA 1 cut(s) 1089
Psp124BI GAGCTC 1 cut(s) 730
Psp6I CCWGG 1 cut(s) 682
PspEI GGTNACC 1 cut(s) 1137
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 3 cut(s) 412, 469, 589
PspPI GGNCC 3 cut(s) 411, 467, 588
PstNI CAGNNNCTG 1 cut(s) 761
PsyI GACNNNGTC 1 cut(s) 1135
RsaI GTAC 3 cut(s) 599, 652, 1218
RsaNI GTAC 3 cut(s) 598, 651, 1217
RseI CAYNNNNRTG 1 cut(s) 1017
SacI GAGCTC 1 cut(s) 730
SalI GTCGAC 1 cut(s) 1309
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 2 cut(s) 384, 1320
SatI GCNGC 5 cut(s) 60, 70, 121, 365, 1256
Sau3AI GATC 3 cut(s) 266, 285, 694
Sau96I GGNCC 3 cut(s) 411, 467, 588
SchI GAGTC 2 cut(s) 959, 1126
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 2 cut(s) 519, 730
SfaNI GCATC 3 cut(s) 288, 534, 1325
SfcI CTRYAG 1 cut(s) 745
SfuI TTCGAA 1 cut(s) 786
SinI GGWCC 2 cut(s) 467, 588
SmiMI CAYNNNNRTG 1 cut(s) 1017
SmlI CTYRAG 2 cut(s) 166, 368
SmoI CTYRAG 2 cut(s) 166, 368
SsiI CCGC 1 cut(s) 1303
SspMI CTAG 1 cut(s) 819
SstI GAGCTC 1 cut(s) 730
StyD4I CCNGG 1 cut(s) 682
TaaI ACNGT 2 cut(s) 757, 1163
TaqI TCGA 6 cut(s) 780, 786, 802, 835, 915, 1310
TaqII GACCGA 1 cut(s) 1125
TatI WGTACW 1 cut(s) 597
TfiI GAWTC 2 cut(s) 31, 1005
Tru1I TTAA 2 cut(s) 384, 1320
Tru9I TTAA 2 cut(s) 384, 1320
TscAI CASTG 2 cut(s) 631, 813
TseFI GTSAC 1 cut(s) 1137
TseI GCWGC 5 cut(s) 59, 69, 120, 364, 1255
Tsp45I GTSAC 1 cut(s) 1137
TspDTI ATGAA 4 cut(s) 44, 722, 944, 1035
TspRI CASTG 2 cut(s) 631, 813
Tth111I GACNNNGTC 1 cut(s) 1135
VpaK11BI GGWCC 2 cut(s) 467, 588
XapI RAATTY 4 cut(s) 125, 422, 911, 963
XceI RCATGY 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 1310
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.