Rroxscaffold_5G00362740

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000298
Physical Location & Seq
Forward (+)
43792750 .. 43795294
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362740.1

Sequence Viewer

Length: 1227 bp
ATGAGTTTTCGTCCCAAAGTTAGCATACCGCTTATCGGTGACAAAGAGGGTTTCGTAACGAAATATGGTTTGTTAAACTCCTGCAATGGTTTACTTTGCTTGTCTGGACCGAAAAGAAATGCTATCTTGTATGTGTGTCATCCAATTTTGGGTGAGTTCATCACCACACCACCTCTTAAAAATGGTATAGACTACCTCGCTTTTTATGGACTTGGTTTTAGTGCTGCTACCAATGAGTACAAAGTGTTAAAGACTTGCCAGGCGACTCAGGCTCAGATATACACCATTGGTACTGGAGTTTGGAGAGACATTGGGCAGGCTCCTTTTGGCATTGTGCGGTTTCCGTCTAATGCTTTTCTACATGGAGCTCTTCATTGGGCTACCCAGTATTGGGAGGGTTATGAGTTTATGCATTCCTTCAACTTTGAAACAGAAAAGTTTCAAACAATACCCCCACCTAGCCACTTTGCACCGAAAAGGAAACTTAAAGAGCGGGTAACCTTGGGAGTGCTGGGAGGTTGTCTCCTCTTATGTGCCTTTGAAGATGACAGTAGCAAATTTGATATGTGGGTTATGAAGGATTATGGTGTCCAAGAGTCTTGGACAAAGTTTCTTGTTATTGAAAACTTGAGCCCCACAAGAAGTTTGACACGTGCAGACTATGAACCAATTATGTTCTTGAGTAATGGTGAAATCTTAATGTCGTATGGTGATTCTGCTGTGGTTTGTTATAATCCAGAAACAAAGAGTTTCAAGGAAACTAGTATTGGTCCGATTGGGTTAGGATTTGTCGCTACGCCTTATAGTCCATCCTTTGTTTCACGCTACTATATTTCAAAAGGAGAGGAGGTGGAAAGTGTAAGAGACAATGAGAACTTCAACAAGCTGTTTCGTAAAGGAAGTAGTAGTTCTGCTTGTTCTGGGAGGCCACCCCATAAGTCCACAAAACTCAACGCAGGGTATTGCCAGCCTGTTGTTCAAGAGGGTCTAACTAGGCCTAGAATCATTACTTCCTCTGTTGCTTCCTCAAAACTCAACCCAGACTATTGTCCCCCTGCTGTTCAAGAGGGCCTCCCTAGCTCTAGAGCCAATACTTGCTCTGTAAGTCTGGGTTTCACTTTGAGGATTGGGAGTGAATGTGCTATATGTGGTGGGCAATTGGGCTATGTATTCAGAGGTAAAGGATTCGCAATGTGTCAACAATATTTTGACTCAAGTTCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

408

Amino Acids

45.06

Weight (kDa)

8.54

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 20 - 202 2.5e-06 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 23 - 258 5.8e-22 F-box associated beta propeller domain
FBA_1 PF07734 26 - 248 4.1e-25 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 732
AccBSI CCGCTC 1 cut(s) 493
AciI CCGC 3 cut(s) 29, 337, 493
AcsI RAATTY 1 cut(s) 557
AcvI CACGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 239, 292
AfiI CCNNNNNNNGG 4 cut(s) 35, 149, 390, 391
AflIII ACRYGT 1 cut(s) 650
AhlI ACTAGT 1 cut(s) 761
AjnI CCWGG 1 cut(s) 258
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AluBI AGCT 3 cut(s) 368, 886, 1080
AluI AGCT 3 cut(s) 368, 886, 1080
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 3 cut(s) 300, 527, 858
AoxI GGCC 3 cut(s) 926, 995, 1069
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 438
AspS9I GGNCC 3 cut(s) 107, 770, 1069
AsuHPI GGTGA 5 cut(s) 50, 154, 164, 701, 722
AvaII GGWCC 2 cut(s) 107, 770
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BanII GRGCYC 2 cut(s) 370, 635
BbrPI CACGTG 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 211
BccI CCATC 1 cut(s) 817
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 3 cut(s) 300, 527, 858
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 6 cut(s) 459, 762, 993, 999, 1077, 1083
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 2 cut(s) 107, 770
BmgT120I GGNCC 3 cut(s) 107, 770, 1069
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 260
BmrI ACTGGG 1 cut(s) 379
BmuI ACTGGG 1 cut(s) 379
BoxI GACNNNNGTC 1 cut(s) 1047
BplI GAGNNNNNCTC 2 cut(s) 507, 539
BpmI CTGGAG 1 cut(s) 315
BpuEI CTTGAG 3 cut(s) 649, 700, 1198
BsaAI YACGTR 1 cut(s) 653
BsaJI CCNNGG 1 cut(s) 501
BsaXI ACNNNNNCTCC 4 cut(s) 834, 864, 1123, 1153
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 149, 390, 391
Bse1I ACTGG 2 cut(s) 298, 385
Bse3DI GCAATG 2 cut(s) 91, 1197
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 2 cut(s) 139, 809
BseLI CCNNNNNNNGG 4 cut(s) 35, 149, 390, 391
BseMI GCAATG 2 cut(s) 91, 1197
BseMII CTCAG 2 cut(s) 281, 287
BseNI ACTGG 2 cut(s) 298, 385
BseRI GAGGAG 2 cut(s) 515, 860
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 511
BsgI GTGCAG 1 cut(s) 675
BshFI GGCC 3 cut(s) 928, 997, 1071
BsiHKAI GWGCWC 1 cut(s) 370
BslFI GGGAC 1 cut(s) 1035
BslI CCNNNNNNNGG 4 cut(s) 35, 149, 390, 391
BsmAI GTCTC 3 cut(s) 300, 527, 858
BsmFI GGGAC 1 cut(s) 1035
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 3 cut(s) 928, 997, 1071
Bsp1286I GDGCHC 2 cut(s) 370, 635
BspACI CCGC 3 cut(s) 29, 337, 493
BspANI GGCC 3 cut(s) 928, 997, 1071
BspCNI CTCAG 2 cut(s) 280, 286
BspLI GGNNCC 1 cut(s) 321
BspQI GCTCTTC 1 cut(s) 375
BsrBI CCGCTC 1 cut(s) 493
BsrDI GCAATG 2 cut(s) 91, 1197
BsrI ACTGG 2 cut(s) 298, 385
BssECI CCNNGG 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 1 cut(s) 375
BstBAI YACGTR 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 318, 968
BstDEI CTNAG 2 cut(s) 267, 273
BstEII GGTNACC 1 cut(s) 496
BstF5I GGATG 2 cut(s) 139, 809
BstMAI GTCTC 3 cut(s) 300, 527, 858
BstMWI GCNNNNNNNGC 2 cut(s) 269, 1077
BstNI CCWGG 1 cut(s) 260
BstPAI GACNNNNGTC 1 cut(s) 1047
BstPI GGTNACC 1 cut(s) 496
BstSCI CCNGG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 211
BsuRI GGCC 3 cut(s) 928, 997, 1071
BtsCI GGATG 2 cut(s) 139, 809
Cac8I GCNNGC 2 cut(s) 318, 968
Cfr13I GGNCC 3 cut(s) 107, 770, 1069
Csp6I GTAC 2 cut(s) 238, 291
CviAII CATG 1 cut(s) 362
CviQI GTAC 2 cut(s) 238, 291
DdeI CTNAG 2 cut(s) 267, 273
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 997
Eco24I GRGCYC 2 cut(s) 370, 635
Eco47I GGWCC 2 cut(s) 107, 770
Eco53kI GAGCTC 1 cut(s) 368
Eco72I CACGTG 1 cut(s) 653
Eco91I GGTNACC 1 cut(s) 496
EcoICRI GAGCTC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 1069
EcoO65I GGTNACC 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 501
EcoT22I ATGCAT 1 cut(s) 414
EcoT38I GRGCYC 2 cut(s) 370, 635
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 1 cut(s) 365
FaqI GGGAC 1 cut(s) 1035
FatI CATG 1 cut(s) 361
FauI CCCGC 1 cut(s) 486
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 2 cut(s) 126, 796
FriOI GRGCYC 2 cut(s) 370, 635
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 6 cut(s) 459, 762, 993, 999, 1077, 1083
GluI GCNGC 1 cut(s) 225
GsaI CCCAGC 1 cut(s) 515
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 3 cut(s) 928, 997, 1071
Hin1II CATG 1 cut(s) 365
HincII GTYRAC 1 cut(s) 1199
HindII GTYRAC 1 cut(s) 1199
HinfI GANTC 6 cut(s) 265, 596, 713, 1002, 1185, 1211
HphI GGTGA 5 cut(s) 50, 154, 164, 701, 722
Hpy166II GTNNAC 3 cut(s) 92, 942, 1199
Hpy188I TCNGA 3 cut(s) 276, 774, 1175
Hpy188III TCNNGA 6 cut(s) 105, 679, 737, 980, 1064, 1083
Hpy8I GTNNAC 3 cut(s) 92, 942, 1199
HpyAV CCTTC 2 cut(s) 427, 571
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 4 cut(s) 84, 412, 470, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 1077
HpyF3I CTNAG 2 cut(s) 267, 273
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 1 cut(s) 365
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 2 cut(s) 325, 365
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 6 cut(s) 459, 762, 993, 999, 1077, 1083
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 3 cut(s) 38, 55, 496
MbiI CCGCTC 1 cut(s) 493
MboII GAAGA 2 cut(s) 362, 554
MfeI CAATTG 1 cut(s) 1157
MhlI GDGCHC 2 cut(s) 370, 635
MluCI AATT 4 cut(s) 144, 557, 669, 1157
MlyI GAGTC 3 cut(s) 259, 605, 1205
Mph1103I ATGCAT 1 cut(s) 414
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 5 cut(s) 74, 177, 248, 486, 698
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 1157
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 269, 1077
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 414
PceI AGGCCT 1 cut(s) 997
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 713, 1002, 1185
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 3 cut(s) 259, 604, 1205
PmaCI CACGTG 1 cut(s) 653
PmlI CACGTG 1 cut(s) 653
PpsI GAGTC 3 cut(s) 259, 604, 1205
Ppu21I YACGTR 1 cut(s) 653
PshAI GACNNNNGTC 1 cut(s) 1047
PsiI TTATAA 1 cut(s) 732
Psp124BI GAGCTC 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 258
PspCI CACGTG 1 cut(s) 653
PspEI GGTNACC 1 cut(s) 496
PspFI CCCAGC 1 cut(s) 511
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 3 cut(s) 107, 770, 1069
RsaI GTAC 2 cut(s) 239, 292
RsaNI GTAC 2 cut(s) 238, 291
SacI GAGCTC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 5 cut(s) 74, 177, 248, 486, 698
SatI GCNGC 1 cut(s) 225
Sau96I GGNCC 3 cut(s) 107, 770, 1069
SchI GAGTC 3 cut(s) 259, 605, 1205
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 370, 635
SinI GGWCC 2 cut(s) 107, 770
SmlI CTYRAG 3 cut(s) 628, 679, 1213
SmoI CTYRAG 3 cut(s) 628, 679, 1213
SpeI ACTAGT 1 cut(s) 761
Sse9I AATT 4 cut(s) 144, 557, 669, 1157
SseBI AGGCCT 1 cut(s) 997
SsiI CCGC 3 cut(s) 29, 337, 493
SspI AATATT 1 cut(s) 1205
SspMI CTAG 6 cut(s) 459, 762, 993, 999, 1077, 1083
SstI GAGCTC 1 cut(s) 370
StuI AGGCCT 1 cut(s) 997
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 1 cut(s) 655
TaqII GACCGA 1 cut(s) 124
TasI AATT 4 cut(s) 144, 557, 669, 1157
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 3 cut(s) 713, 1002, 1185
Tru1I TTAA 5 cut(s) 74, 177, 248, 486, 698
Tru9I TTAA 5 cut(s) 74, 177, 248, 486, 698
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 4 cut(s) 148, 362, 590, 678
TspGWI ACGGA 1 cut(s) 333
VpaK11BI GGWCC 2 cut(s) 107, 770
XapI RAATTY 1 cut(s) 557
XbaI TCTAGA 1 cut(s) 1082
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 6 cut(s) 459, 762, 993, 999, 1077, 1083
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.