Rh6CG478600

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000298
Physical Location & Seq
Forward (+)
64652479 .. 64653030
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG478600.1

Sequence Viewer

Length: 498 bp
ATGTGCAATCCCATTTTGAGCGAGTCTATTACCATTCCACCTGCTTATCATAAGGACCAGCAACCTGGAGCTTTTTTTGGAATTGGTTTTAGCGTCCAAACCAATCAGTACAAGCTGTTGGATACCTTTCGTCCAAACTTGTGTAGCGATTACCTTGAGGCTAAATTGGTACAGGAGTTTGTAGAAGCATTGGAAATGCTCCTACTGATGATTGATGACATGTCACCATGCAATTCTCTTCTGCATGTAGCTCTTCATTGGCTTCTCATGGGTTTAAATGGTTCTCACGTTATACATTCTTTCGATTTCGAAACTGAACAATTTCGACCACTACTTTTGCCTTCTGAAGATCGTTTGAGGTCTTGCTCCCAATATGATTGTTTCAGGTTAGGAGTTTGGGAAAGTTGTCTGTCATTATCTGTGGTTGGTGTTGATGAGCACGAATTTGACATTTGGTTTGTGAAGGATTATAAATGGTGTCCGAGAGTCTTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

165

Amino Acids

19.1

Weight (kDa)

4.72

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 155 6.7e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AarI CACCTGC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 2 cut(s) 110, 171
AflIII ACRYGT 1 cut(s) 219
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 3 cut(s) 71, 115, 251
AluI AGCT 3 cut(s) 71, 115, 251
Alw21I GWGCWC 1 cut(s) 441
ApoI RAATTY 1 cut(s) 443
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
Asp700I GAANNNNTTC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 216
AsuII TTCGAA 1 cut(s) 309
AvaII GGWCC 1 cut(s) 55
BaeI ACNNNNGTAYC 2 cut(s) 161, 194
Bbv12I GWGCWC 1 cut(s) 441
BciT130I CCWGG 1 cut(s) 66
BciVI GTATCC 1 cut(s) 115
BfuAI ACCTGC 1 cut(s) 49
BfuI GTATCC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 441
Bsp119I TTCGAA 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 49
BspQI GCTCTTC 1 cut(s) 258
BspT104I TTCGAA 1 cut(s) 309
BssMI GATC 1 cut(s) 349
Bst2UI CCWGG 1 cut(s) 66
Bst6I CTCTTC 2 cut(s) 243, 258
BstBI TTCGAA 1 cut(s) 309
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 2 cut(s) 223, 248
BstSCI CCNGG 1 cut(s) 64
BstXI CCANNNNNNTGG 1 cut(s) 65
BsuI GTATCC 1 cut(s) 115
BveI ACCTGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 109, 170
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 4 cut(s) 220, 228, 245, 268
CviJI RGCY 5 cut(s) 71, 115, 161, 251, 262
CviKI_1 RGCY 5 cut(s) 71, 115, 161, 251, 262
CviQI GTAC 2 cut(s) 109, 170
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DraI TTTAAA 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 243, 258
EarI CTCTTC 2 cut(s) 243, 258
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 64
FaeI CATG 4 cut(s) 223, 231, 248, 271
FaiI YATR 8 cut(s) 51, 221, 229, 246, 269, 293, 375, 471
FatI CATG 4 cut(s) 219, 227, 244, 267
GsuI CTGGAG 1 cut(s) 87
HgaI GACGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 223, 231, 248, 271
HinfI GANTC 2 cut(s) 23, 486
HphI GGTGA 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 346, 483
HpyAV CCTTC 2 cut(s) 351, 457
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 6, 231, 244
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 4 cut(s) 223, 231, 248, 271
Kzo9I GATC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 3 cut(s) 68, 204, 371
LpnPI CCDG 6 cut(s) 51, 54, 71, 78, 158, 370
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 222
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 3 cut(s) 230, 245, 359
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 5 cut(s) 81, 164, 232, 320, 443
MlyI GAGTC 2 cut(s) 32, 495
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 2 cut(s) 151, 351
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
NdeII GATC 1 cut(s) 349
NlaIII CATG 4 cut(s) 223, 231, 248, 271
NmuCI GTSAC 1 cut(s) 222
NspI RCATGY 2 cut(s) 223, 248
NspV TTCGAA 1 cut(s) 309
PaqCI CACCTGC 1 cut(s) 49
PciI ACATGT 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 321
PleI GAGTC 2 cut(s) 31, 494
PpsI GAGTC 2 cut(s) 31, 494
PscI ACATGT 1 cut(s) 219
PsiI TTATAA 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspPI GGNCC 1 cut(s) 55
RsaI GTAC 2 cut(s) 110, 171
RsaNI GTAC 2 cut(s) 109, 170
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 275
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 2 cut(s) 32, 495
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 309
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 5 cut(s) 81, 164, 232, 320, 443
StyD4I CCNGG 1 cut(s) 64
TaiI ACGT 1 cut(s) 291
TaqI TCGA 3 cut(s) 303, 309, 325
TasI AATT 5 cut(s) 81, 164, 232, 320, 443
TatI WGTACW 1 cut(s) 108
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TseFI GTSAC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 443
XceI RCATGY 2 cut(s) 223, 248
XmnI GAANNNNTTC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.