Rh5DG455700

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000298
Physical Location & Seq
Reverse (-)
72527665 .. 72536233
8569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG455700.1

Sequence Viewer

Length: 831 bp
ATGGAACTTAGCTTTGATTGTTATGAACCTATTATCCTAGCCTTGAGCAATGGAGAAATTCTGATGTTCAATGATGATGATCCTCGGGTCGTAGTTTGTTATAATCCAGAAGCAAAGAGTTTCAGGGAAGCTAGAATTACTACGACTACCTTGCCGTTGATTCAACTTGCTTACCGTCCATCCTTTGTTTCGCTCTATGATGTTTCAAAAAGAGAGGAGGTGAAAAGGGTAAGAGATTTTAAGAAATCTAACAAGCTGCTGGGGGTAGGGAGTAGTGGTTTTGCTTATGGGTCCGCTGTTGGCAGAGTACTCGACGAGCTTGTCGATCCGTTTGTGGAGCTCCGGGTCGGATGGACGACCAGCCACCGGAGGAAGGCTGAGGAGGGCCAGCGTGGAAAGGCGGGGGGGGGGACAGGTGGAGGTGGGGAGCGAAGGCCGGCGAAGGGGGTAGGTGGTGAGGGTGAGGCGCCGGGCCGTAAGAGAGAACCTGCGGCGGCGGTTGCTGCTGCAAGTGGGGCTGGTAGGGGAAAGGGTGGGTGTCCGAATGGAGGCGCGTCAAACTGTTGGGCCTGGGGCGGGATCATCATTGTGATGCACAACGCCAGTGAGGAAGTCGCAGAAATTAACCACATATCTGGGCTTGTGGGATTTTGGCTATTGTTGGGTATTGTTGCTTGCGTTCCTTCTGAGTCCTATCTGATCGATCCTGCTGCACCAAACGAAGTTGATCACTTGACTGCGCCAGTAGCTAATCGATTGCCACAGGTCGGAGTGTCGGACCTCGAAACTAGAATTCCTAATCTTCCTCAGGCCATGTCCGTCCTCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

276

Amino Acids

29.34

Weight (kDa)

6.14

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 102
AasI GACNNNNNNGTC 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 466
AccII CGCG 1 cut(s) 554
AciI CCGC 6 cut(s) 294, 401, 491, 494, 497, 576
AclWI GGATC 4 cut(s) 74, 320, 587, 698
AcsI RAATTY 2 cut(s) 57, 792
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 6 cut(s) 366, 373, 443, 548, 576, 767
AgsI TTSAA 3 cut(s) 70, 164, 207
AjnI CCWGG 1 cut(s) 569
AloI GAACNNNNNNTCC 2 cut(s) 18, 50
AluBI AGCT 6 cut(s) 12, 131, 256, 319, 340, 749
AluI AGCT 6 cut(s) 12, 131, 256, 319, 340, 749
Alw21I GWGCWC 1 cut(s) 342
AlwI GGATC 4 cut(s) 74, 320, 587, 698
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 5 cut(s) 385, 434, 472, 567, 810
ApeKI GCWGC 4 cut(s) 256, 503, 506, 710
ApoI RAATTY 2 cut(s) 57, 792
AspLEI GCGC 3 cut(s) 469, 554, 742
AspS9I GGNCC 5 cut(s) 291, 385, 472, 567, 778
AsuC2I CCSGG 2 cut(s) 344, 471
AsuHPI GGTGA 3 cut(s) 232, 467, 473
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 2 cut(s) 291, 778
AxyI CCTNAGG 1 cut(s) 807
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 4 cut(s) 243, 490, 493, 697
BccI CCATC 2 cut(s) 187, 345
BceAI ACGGC 2 cut(s) 139, 459
BcgI CGANNNNNNTGC 6 cut(s) 133, 167, 292, 326, 692, 726
BciT130I CCWGG 1 cut(s) 571
BclI TGATCA 1 cut(s) 727
BcnI CCSGG 2 cut(s) 344, 471
BfaI CTAG 3 cut(s) 38, 132, 789
BfoI RGCGCY 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 496
BisI GCNGC 6 cut(s) 257, 492, 495, 504, 507, 711
BlsI GCNGC 6 cut(s) 258, 493, 496, 505, 508, 712
BmcAI AGTACT 1 cut(s) 309
Bme1390I CCNGG 3 cut(s) 344, 471, 571
Bme18I GGWCC 2 cut(s) 291, 778
BmeT110I CYCGRG 1 cut(s) 84
BmgT120I GGNCC 5 cut(s) 291, 385, 472, 567, 778
BmiI GGNNCC 2 cut(s) 292, 468
BmrFI CCNGG 3 cut(s) 344, 471, 571
BmsI GCATC 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 2 cut(s) 344, 471
Bsa29I ATCGAT 2 cut(s) 702, 754
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 83, 570
BsaWI WCCGGW 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 6 cut(s) 366, 373, 443, 548, 576, 767
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 2 cut(s) 603, 743
Bse21I CCTNAGG 1 cut(s) 807
Bse3DI GCAATG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 571
BseCI ATCGAT 2 cut(s) 702, 754
BseDI CCNNGG 2 cut(s) 83, 570
BseGI GGATG 2 cut(s) 179, 356
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 6 cut(s) 366, 373, 443, 548, 576, 767
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 3 cut(s) 369, 678, 821
BseNI ACTGG 2 cut(s) 603, 743
BseRI GAGGAG 2 cut(s) 230, 395
BseXI GCAGC 4 cut(s) 243, 490, 493, 697
BseYI CCCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 5 cut(s) 387, 436, 474, 569, 812
BshNI GGYRCC 1 cut(s) 466
BshVI ATCGAT 2 cut(s) 702, 754
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 4 cut(s) 343, 367, 437, 470
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 6 cut(s) 366, 373, 443, 548, 576, 767
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 5 cut(s) 387, 436, 474, 569, 812
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 6 cut(s) 79, 325, 579, 699, 703, 727
BspACI CCGC 6 cut(s) 294, 401, 491, 494, 497, 576
BspANI GGCC 5 cut(s) 387, 436, 474, 569, 812
BspCNI CTCAG 3 cut(s) 370, 679, 820
BspDI ATCGAT 2 cut(s) 702, 754
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 2 cut(s) 292, 468
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 4 cut(s) 74, 320, 587, 698
BspT107I GGYRCC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 436
BsrI ACTGG 2 cut(s) 603, 743
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 83, 570
BssMI GATC 6 cut(s) 79, 325, 579, 699, 703, 727
BssNI GRCGYC 1 cut(s) 467
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 2 cut(s) 176, 563
BstACI GRCGYC 1 cut(s) 467
BstC8I GCNNGC 3 cut(s) 389, 438, 676
BstDEI CTNAG 4 cut(s) 8, 378, 687, 807
BstF5I GGATG 2 cut(s) 179, 356
BstFNI CGCG 1 cut(s) 554
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 3 cut(s) 469, 554, 742
BstKTI GATC 6 cut(s) 82, 328, 582, 702, 706, 730
BstMBI GATC 6 cut(s) 79, 325, 579, 699, 703, 727
BstMWI GCNNNNNNNGC 4 cut(s) 500, 503, 515, 746
BstNI CCWGG 1 cut(s) 571
BstSCI CCNGG 3 cut(s) 342, 469, 569
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 4 cut(s) 243, 490, 493, 697
BstXI CCANNNNNNTGG 1 cut(s) 635
Bsu15I ATCGAT 2 cut(s) 702, 754
Bsu36I CCTNAGG 1 cut(s) 807
BsuRI GGCC 5 cut(s) 387, 436, 474, 569, 812
BsuTUI ATCGAT 2 cut(s) 702, 754
BtsCI GGATG 2 cut(s) 179, 356
BtsIMutI CAGTG 1 cut(s) 610
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 3 cut(s) 389, 438, 676
CfoI GCGC 3 cut(s) 469, 554, 742
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 5 cut(s) 291, 385, 472, 567, 778
ClaI ATCGAT 2 cut(s) 702, 754
CseI GACGC 1 cut(s) 543
Csp6I GTAC 1 cut(s) 308
CviAII CATG 1 cut(s) 814
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 4 cut(s) 8, 378, 687, 807
DinI GGCGCC 1 cut(s) 468
DpnI GATC 6 cut(s) 81, 327, 581, 701, 705, 729
DpnII GATC 6 cut(s) 79, 325, 579, 699, 703, 727
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 291, 778
Eco53kI GAGCTC 1 cut(s) 340
Eco81I CCTNAGG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 340
EcoRI GAATTC 1 cut(s) 792
EcoRII CCWGG 1 cut(s) 569
EcoT38I GRGCYC 1 cut(s) 342
EgeI GGCGCC 1 cut(s) 468
EheI GGCGCC 1 cut(s) 468
FaeI CATG 1 cut(s) 817
FaiI YATR 6 cut(s) 24, 102, 198, 288, 632, 815
FaqI GGGAC 1 cut(s) 424
FatI CATG 1 cut(s) 813
FauI CCCGC 2 cut(s) 394, 569
FbaI TGATCA 1 cut(s) 727
Fnu4HI GCNGC 6 cut(s) 257, 492, 495, 504, 507, 711
FokI GGATG 2 cut(s) 166, 363
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 6 cut(s) 257, 492, 495, 504, 507, 711
FspBI CTAG 3 cut(s) 38, 132, 789
GlaI GCGC 3 cut(s) 468, 553, 741
GluI GCNGC 6 cut(s) 257, 492, 495, 504, 507, 711
GsaI CCCAGC 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 5 cut(s) 387, 436, 474, 569, 812
HapII CCGG 4 cut(s) 343, 367, 437, 470
HgaI GACGC 1 cut(s) 543
HhaI GCGC 3 cut(s) 469, 554, 742
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 1 cut(s) 817
Hin6I GCGC 3 cut(s) 467, 552, 740
HinP1I GCGC 3 cut(s) 467, 552, 740
HinfI GANTC 2 cut(s) 160, 689
HpaII CCGG 4 cut(s) 343, 367, 437, 470
HphI GGTGA 3 cut(s) 232, 467, 473
Hpy188I TCNGA 7 cut(s) 63, 350, 543, 688, 699, 770, 778
Hpy188III TCNNGA 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 4 cut(s) 367, 426, 436, 693
HpyCH4III ACNGT 2 cut(s) 176, 563
HpyCH4V TGCA 3 cut(s) 509, 595, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 500, 503, 515, 746
HpyF3I CTNAG 4 cut(s) 8, 378, 687, 807
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 1 cut(s) 817
HspAI GCGC 3 cut(s) 467, 552, 740
KasI GGCGCC 1 cut(s) 466
KroI GCCGGC 1 cut(s) 436
KroNI GCCGGC 1 cut(s) 438
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 6 cut(s) 79, 325, 579, 699, 703, 727
LmnI GCTCC 3 cut(s) 337, 345, 427
Lsp1109I GCAGC 4 cut(s) 243, 490, 493, 697
LweI GCATC 1 cut(s) 582
MaeI CTAG 3 cut(s) 38, 132, 789
MalI GATC 6 cut(s) 81, 327, 581, 701, 705, 729
MboI GATC 6 cut(s) 79, 325, 579, 699, 703, 727
MboII GAAGA 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 4 cut(s) 57, 135, 621, 792
Mly113I GGCGCC 1 cut(s) 467
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 3 cut(s) 328, 748, 756
MroNI GCCGGC 1 cut(s) 436
MseI TTAA 2 cut(s) 240, 624
MslI CAYNNNNRTG 2 cut(s) 587, 590
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 4 cut(s) 343, 367, 437, 470
MspR9I CCNGG 3 cut(s) 344, 471, 571
MvaI CCWGG 1 cut(s) 571
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 4 cut(s) 500, 503, 515, 746
NaeI GCCGGC 1 cut(s) 438
NarI GGCGCC 1 cut(s) 467
NciI CCSGG 2 cut(s) 344, 471
NdeII GATC 6 cut(s) 79, 325, 579, 699, 703, 727
NgoMIV GCCGGC 1 cut(s) 436
NlaIII CATG 1 cut(s) 817
NlaIV GGNNCC 2 cut(s) 292, 468
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PdiI GCCGGC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 6 cut(s) 258, 493, 496, 505, 508, 712
PleI GAGTC 1 cut(s) 697
PluTI GGCGCC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 697
PsiI TTATAA 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 569
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 2 cut(s) 292, 468
PspPI GGNCC 5 cut(s) 291, 385, 472, 567, 778
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 2 cut(s) 587, 590
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 2 cut(s) 240, 624
SatI GCNGC 6 cut(s) 257, 492, 495, 504, 507, 711
Sau3AI GATC 6 cut(s) 79, 325, 579, 699, 703, 727
Sau96I GGNCC 5 cut(s) 291, 385, 472, 567, 778
ScaI AGTACT 1 cut(s) 309
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 3 cut(s) 344, 471, 571
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 1 cut(s) 582
SfoI GGCGCC 1 cut(s) 468
SinI GGWCC 2 cut(s) 291, 778
SmiMI CAYNNNNRTG 2 cut(s) 587, 590
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 4 cut(s) 57, 135, 621, 792
SsiI CCGC 6 cut(s) 294, 401, 491, 494, 497, 576
SspDI GGCGCC 1 cut(s) 466
SspMI CTAG 3 cut(s) 38, 132, 789
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 342, 469, 569
TaaI ACNGT 2 cut(s) 176, 563
TaqI TCGA 5 cut(s) 312, 324, 702, 754, 783
TasI AATT 4 cut(s) 57, 135, 621, 792
TatI WGTACW 1 cut(s) 307
TauI GCSGC 2 cut(s) 494, 497
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 2 cut(s) 240, 624
Tru9I TTAA 2 cut(s) 240, 624
TscAI CASTG 1 cut(s) 610
TseI GCWGC 4 cut(s) 256, 503, 506, 710
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 2 cut(s) 318, 808
TspRI CASTG 1 cut(s) 610
VpaK11BI GGWCC 2 cut(s) 291, 778
XapI RAATTY 2 cut(s) 57, 792
XspI CTAG 3 cut(s) 38, 132, 789
ZrmI AGTACT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.