RchiOBHm_Chr4g0419911

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Forward (+)
45401697 .. 45404439
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38974

Sequence Viewer

Length: 1071 bp
ATGAATCCAAGGAAAAGACAAACAGTGATCAGAAGCATCAGAGCAAAAGGAGAACAACGGCAGCCCACAGGTCCTTGCCGAATCCGGCAACTTCCATCGGCTTTAGTCATGGAAATTCTCTCCAGGCTCACTCCCAACACTCTCATCAACTGCAGGTGCGTTTGCAAATCATGGCTTTTTGTGATTTCCCACCCTCATTTTAATCGTCTTCTCCATTCAAGATCCCCAATTGGCATCTTGATCCAGACATTTCCTCATCCCATCAGATGGAAAGGGAGGATACTAGAGTTCACCCAGATAGTAGAATGTGCTGCTCCTGATTTGCAGCTAGAGAAGATGAGTTTTCGTCCCAAAGTTAGCATACCGCTTATCGGTGACAAAGAGGGTTTCATTACGAAATATGGTTTGTTAAACTCCTGCAATGGTTTGCTTTGCTTGTCTGGACCGAAAAGAAATGATATCTTGTATGTGTGTAATCCAATTTTGGGTGAGTTCATCACCACAGCACCTCTTAAAAATGGTATAGACTACCTCGCTTTTAATGGACTTGGTTTTAGTGCTGCTACCAATGAGTACAAAGTGTTAAAGACTTGCCAGGCGAATCAGGCTCAGATATACACCATTGGTACTGGAGTTTGGAGAGACATTGGACAGGCTCCTTTTGGCATTGTGCGGTTTCCGTTTAATGCTTTTCTACATGGAGCTCTTCATTGGGCTACCCAGTATTGGTCGGGTTATGAGTTTATGCATTCCTTCAACTTTGAAACAGAAAAGTTTCAAACAATACCCCCACCTAGCCACTTTGCACCGAAAAGGAAACTTAAAGAGCGGGTAACCTTGGGAGTGCTGGGAGGTTGTCTCCTCTTATGTGCCTTTGAAGATGACAGTAGCAAATTTGATATGTGGGTTATGAAGGATTATGGTGTCCAAGAGTCTTGGACAAAGTTTCTTGTTATTGAAAACTTGAGCCCCACAAGAAGTTTGACACGTGCAGACTATGAACCAATTATGTTCTTGAGTAACGGTGAAATCTTAATGTCGTATGGTGCTTCTGCTGTGGTTTTGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

356

Amino Acids

40.34

Weight (kDa)

9.29

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 28 - 66 2.6e-08 F-box-like
F-box PF00646 30 - 69 3.3e-09 F-box domain
b-prop_At3g26010-like PF24750 131 - 314 3.4e-06 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 135 - 345 1.7e-18 F-box associated beta propeller domain
FBA_1 PF07734 138 - 325 4.8e-25 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1069
AarI CACCTGC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 267
AccBSI CCGCTC 1 cut(s) 829
AciI CCGC 3 cut(s) 365, 673, 829
AclWI GGATC 2 cut(s) 216, 235
AcsI RAATTY 2 cut(s) 114, 893
AcvI CACGTG 1 cut(s) 989
AfaI GTAC 2 cut(s) 575, 628
AfiI CCNNNNNNNGG 4 cut(s) 267, 371, 485, 726
AflIII ACRYGT 1 cut(s) 986
AgsI TTSAA 6 cut(s) 219, 757, 764, 779, 878, 959
AjnI CCWGG 2 cut(s) 122, 594
AluBI AGCT 2 cut(s) 328, 704
AluI AGCT 2 cut(s) 328, 704
Alw21I GWGCWC 1 cut(s) 706
Alw26I GTCTC 2 cut(s) 636, 863
AlwI GGATC 2 cut(s) 216, 235
ApeKI GCWGC 4 cut(s) 61, 311, 325, 560
ApoI RAATTY 2 cut(s) 114, 893
Asp700I GAANNNNTTC 1 cut(s) 774
AspS9I GGNCC 2 cut(s) 71, 443
AsuHPI GGTGA 5 cut(s) 283, 386, 490, 500, 1037
AvaII GGWCC 2 cut(s) 71, 443
BaeI ACNNNNGTAYC 4 cut(s) 272, 305, 618, 651
BanII GRGCYC 2 cut(s) 706, 971
BbrPI CACGTG 1 cut(s) 989
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 706
BbvI GCAGC 4 cut(s) 73, 298, 337, 547
BccI CCATC 3 cut(s) 103, 261, 269
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 124, 596
BciVI GTATCC 1 cut(s) 273
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 636, 863
BfaI CTAG 3 cut(s) 284, 329, 795
BfmI CTRYAG 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 144
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 4 cut(s) 62, 312, 326, 561
BlsI GCNGC 4 cut(s) 63, 313, 327, 562
Bme1390I CCNGG 2 cut(s) 124, 596
Bme18I GGWCC 2 cut(s) 71, 443
BmgT120I GGNCC 2 cut(s) 71, 443
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 2 cut(s) 124, 596
BmrI ACTGGG 1 cut(s) 715
BmsI GCATC 2 cut(s) 45, 243
BmuI ACTGGG 1 cut(s) 715
BpiI GAAGAC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 843, 875
BpmI CTGGAG 2 cut(s) 106, 651
BpuEI CTTGAG 2 cut(s) 985, 1036
BsaAI YACGTR 1 cut(s) 989
BsaJI CCNNGG 2 cut(s) 8, 837
Bsc4I CCNNNNNNNGG 4 cut(s) 267, 371, 485, 726
Bse1I ACTGG 2 cut(s) 634, 721
Bse3DI GCAATG 1 cut(s) 427
BseBI CCWGG 2 cut(s) 124, 596
BseDI CCNNGG 2 cut(s) 8, 837
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 4 cut(s) 267, 371, 485, 726
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 2 cut(s) 634, 721
BseRI GAGGAG 1 cut(s) 851
BseXI GCAGC 4 cut(s) 73, 298, 337, 547
BseYI CCCAGC 1 cut(s) 847
BsgI GTGCAG 1 cut(s) 1011
BsiHKAI GWGCWC 1 cut(s) 706
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 4 cut(s) 267, 371, 485, 726
BsmAI GTCTC 2 cut(s) 636, 863
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 748
Bsp1286I GDGCHC 2 cut(s) 706, 971
Bsp143I GATC 3 cut(s) 27, 221, 240
BspACI CCGC 3 cut(s) 365, 673, 829
BspCNI CTCAG 1 cut(s) 622
BspLI GGNNCC 1 cut(s) 657
BspMAI CTGCAG 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 2 cut(s) 216, 235
BspQI GCTCTTC 1 cut(s) 711
BsrBI CCGCTC 1 cut(s) 829
BsrDI GCAATG 1 cut(s) 427
BsrI ACTGG 2 cut(s) 634, 721
BssECI CCNNGG 2 cut(s) 8, 837
BssMI GATC 3 cut(s) 27, 221, 240
BssT1I CCWWGG 2 cut(s) 8, 837
Bst2UI CCWGG 2 cut(s) 124, 596
Bst4CI ACNGT 3 cut(s) 25, 887, 1025
Bst6I CTCTTC 1 cut(s) 711
BstBAI YACGTR 1 cut(s) 989
BstDEI CTNAG 1 cut(s) 609
BstEII GGTNACC 1 cut(s) 832
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 3 cut(s) 30, 224, 243
BstMAI GTCTC 2 cut(s) 636, 863
BstMBI GATC 3 cut(s) 27, 221, 240
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNI CCWGG 2 cut(s) 124, 596
BstPI GGTNACC 1 cut(s) 832
BstSCI CCNGG 2 cut(s) 122, 594
BstSFI CTRYAG 1 cut(s) 151
BstV1I GCAGC 4 cut(s) 73, 298, 337, 547
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuI GTATCC 1 cut(s) 273
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 71, 443
Csp6I GTAC 2 cut(s) 574, 627
CviAII CATG 3 cut(s) 109, 171, 698
CviQI GTAC 2 cut(s) 574, 627
DdeI CTNAG 1 cut(s) 609
DpnI GATC 3 cut(s) 29, 223, 242
DpnII GATC 3 cut(s) 27, 221, 240
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Ecl136II GAGCTC 1 cut(s) 704
Eco130I CCWWGG 2 cut(s) 8, 837
Eco24I GRGCYC 2 cut(s) 706, 971
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 71, 443
Eco53kI GAGCTC 1 cut(s) 704
Eco72I CACGTG 1 cut(s) 989
Eco91I GGTNACC 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 704
EcoO109I RGGNCCY 1 cut(s) 71
EcoO65I GGTNACC 1 cut(s) 832
EcoRII CCWGG 2 cut(s) 122, 594
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 2 cut(s) 8, 837
EcoT22I ATGCAT 1 cut(s) 750
EcoT38I GRGCYC 2 cut(s) 706, 971
ErhI CCWWGG 2 cut(s) 8, 837
FaeI CATG 3 cut(s) 112, 174, 701
FaqI GGGAC 1 cut(s) 333
FatI CATG 3 cut(s) 108, 170, 697
FauI CCCGC 1 cut(s) 822
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 62, 312, 326, 561
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 2 cut(s) 706, 971
Fsp4HI GCNGC 4 cut(s) 62, 312, 326, 561
FspBI CTAG 3 cut(s) 284, 329, 795
GluI GCNGC 4 cut(s) 62, 312, 326, 561
GsaI CCCAGC 1 cut(s) 851
GsuI CTGGAG 2 cut(s) 106, 651
HapII CCGG 1 cut(s) 85
Hin1II CATG 3 cut(s) 112, 174, 701
HinfI GANTC 4 cut(s) 4, 81, 601, 932
HpaII CCGG 1 cut(s) 85
HphI GGTGA 5 cut(s) 283, 386, 490, 500, 1037
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 4 cut(s) 32, 41, 266, 612
Hpy188III TCNNGA 6 cut(s) 219, 238, 244, 317, 441, 1015
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 763, 907
HpyCH4III ACNGT 3 cut(s) 25, 887, 1025
HpyCH4IV ACGT 1 cut(s) 988
HpyCH4V TGCA 7 cut(s) 153, 165, 325, 420, 748, 806, 992
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 1 cut(s) 988
Hsp92II CATG 3 cut(s) 112, 174, 701
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 3 cut(s) 27, 221, 240
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 3 cut(s) 319, 661, 701
Lsp1109I GCAGC 4 cut(s) 73, 298, 337, 547
LweI GCATC 2 cut(s) 45, 243
MaeI CTAG 3 cut(s) 284, 329, 795
MaeII ACGT 1 cut(s) 988
MaeIII GTNAC 3 cut(s) 374, 832, 1019
MalI GATC 3 cut(s) 29, 223, 242
MbiI CCGCTC 1 cut(s) 829
MboI GATC 3 cut(s) 27, 221, 240
MboII GAAGA 4 cut(s) 200, 346, 698, 890
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 2 cut(s) 706, 971
MluCI AATT 5 cut(s) 114, 228, 480, 893, 1005
MlyI GAGTC 1 cut(s) 941
MnlI CCTC 8 cut(s) 204, 264, 270, 376, 519, 542, 845, 872
Mph1103I ATGCAT 1 cut(s) 750
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 8 cut(s) 201, 410, 513, 540, 584, 684, 822, 1034
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 2 cut(s) 124, 596
MunI CAATTG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 2 cut(s) 124, 596
MwoI GCNNNNNNNGC 1 cut(s) 605
NdeII GATC 3 cut(s) 27, 221, 240
NlaIII CATG 3 cut(s) 112, 174, 701
NlaIV GGNNCC 1 cut(s) 657
NmuCI GTSAC 1 cut(s) 374
NsiI ATGCAT 1 cut(s) 750
PaqCI CACCTGC 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 711
PctI GAATGC 1 cut(s) 748
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 3 cut(s) 4, 81, 601
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 4 cut(s) 63, 313, 327, 562
PleI GAGTC 1 cut(s) 940
PmaCI CACGTG 1 cut(s) 989
PmlI CACGTG 1 cut(s) 989
PpsI GAGTC 1 cut(s) 940
Ppu21I YACGTR 1 cut(s) 989
PpuMI RGGWCCY 1 cut(s) 71
PsiI TTATAA 1 cut(s) 1069
Psp124BI GAGCTC 1 cut(s) 706
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 122, 594
PspCI CACGTG 1 cut(s) 989
PspEI GGTNACC 1 cut(s) 832
PspFI CCCAGC 1 cut(s) 847
PspGI CCWGG 2 cut(s) 122, 594
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 2 cut(s) 71, 443
PspPPI RGGWCCY 1 cut(s) 71
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 221
RsaI GTAC 2 cut(s) 575, 628
RsaNI GTAC 2 cut(s) 574, 627
SacI GAGCTC 1 cut(s) 706
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 8 cut(s) 201, 410, 513, 540, 584, 684, 822, 1034
SatI GCNGC 4 cut(s) 62, 312, 326, 561
Sau3AI GATC 3 cut(s) 27, 221, 240
Sau96I GGNCC 2 cut(s) 71, 443
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 2 cut(s) 124, 596
SduI GDGCHC 2 cut(s) 706, 971
SfaNI GCATC 2 cut(s) 45, 243
SfcI CTRYAG 1 cut(s) 151
SinI GGWCC 2 cut(s) 71, 443
SmlI CTYRAG 2 cut(s) 964, 1015
SmoI CTYRAG 2 cut(s) 964, 1015
Sse9I AATT 5 cut(s) 114, 228, 480, 893, 1005
SsiI CCGC 3 cut(s) 365, 673, 829
SspMI CTAG 3 cut(s) 284, 329, 795
SstI GAGCTC 1 cut(s) 706
StyD4I CCNGG 2 cut(s) 122, 594
StyI CCWWGG 2 cut(s) 8, 837
TaaI ACNGT 3 cut(s) 25, 887, 1025
TaiI ACGT 1 cut(s) 991
TaqII GACCGA 1 cut(s) 460
TasI AATT 5 cut(s) 114, 228, 480, 893, 1005
TatI WGTACW 1 cut(s) 573
TfiI GAWTC 3 cut(s) 4, 81, 601
Tru1I TTAA 8 cut(s) 201, 410, 513, 540, 584, 684, 822, 1034
Tru9I TTAA 8 cut(s) 201, 410, 513, 540, 584, 684, 822, 1034
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 4 cut(s) 61, 311, 325, 560
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 6 cut(s) 17, 379, 484, 698, 926, 1014
TspGWI ACGGA 1 cut(s) 669
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 71, 443
XapI RAATTY 2 cut(s) 114, 893
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 3 cut(s) 284, 329, 795
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.