Prupe.1G146900_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000298
Physical Location & Seq
Reverse (-)
11550554 .. 11552857
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G146900.1

Sequence Viewer

Length: 1317 bp
ATGAATAATATGAATCCAAGCAAAAGAGCAGCAAATAGAGCAGCGACTTGCAGCAAAGACAGAGAGCGATTAGGAGAAAAATGGCAGCAACCCAGAGGTCCTTGTCCCTGCACCAACTTCCAGCAACTCCCACCGGCTATAGCCATGGAGATTCTCTCAATGCTCTCCATGAAAACCCTCCTCAACTGCAGGTGCGTTTGCAAAGAGTGGCTTTCTCTAATTTCTGACCCTCAATTTACTCATCCCCACCTATCAAGATCAAGAATTGGCATCTTGATCAAGAAGTATCCCCATAATCTGAAATCATGGAAACCTGAGTTGACCCATGTAGAGGAATGTGCTGAATCTGATTCGTGGGTAGACACAATGAACTTTACCGACAATGTACCCATTTCCGAATTCGGTTTGGTAAACTCATGCAATGGTTTAGTTTGTTTGTCTGGACCTCATAAATATGACCCATGTTATGTTTGCAATCCAATTTTGGGTGAATTCATCATCATTCCACCTACCCAGAAAGGTAGGGGCTGGTGCAGTTTTGTTGGGTTTGGTTTTAGCGTCAGGACGAATGAGTACAAGGTGTTGCAAACGAGCTTATCTGACAATTTCTGCAAGGCTGAGGCTGAGATATACACCATTGGTACAGGGCTTTGGAGAAGCATTGGAAATGCTCCTATGGACTTCCCTGAGTTACCATTCAATTCTTATCTGCGAGGAGCTCTTCATTGGGTTTCCTATGGTGGTAATATGTCTATGCTTATAAACACTTTCAATTATGGAACAGAGCAATTCCAACGACTACCCTCACCTTGCTGCTTTGGACAAAGAAAGAAGCAATCTTCAGAGTCTTTTAAGTTGGGAGTGTTAGGAGGTTGCCTCCTTTTATCTGTGTTTGACGATGAATCTAGCAAAATTGGCATGTGGGTTATGAAGGATTATGGTGTCCAAGAGTCTTGGACTAAATTTCTTGTCATCGTCGAAAACTTGGTTCGAAGGACACCTTTCTTGAGTTTGCATGAACCTATCATGTTTTTGAGTAATGGGGAAATCCTGATGGTGCACAACAATTGGGATGTTGTTTGTTATAATAAAGAAAAAAAGAGTTTCAGGGAAATCAGACTTACTGGGACTCGGTCATCATTCTCATTCAATGCAATTGCTTACAGTCCATCCTTTGTTTCACTCTACGATGTTTCAAGAGGAGAGGAGGTGAAGAGGGTAAGAGCCGGGAATAAATCTGACAAGCTGCGTGCTGTGGGGAGTTCTGATTGTGTTGGTTCTGGGATGCCACCCTACAAGAACACAAAACTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

439

Amino Acids

49.49

Weight (kDa)

8.78

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 761, 1086
AarI CACCTGC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 360
AcsI RAATTY 3 cut(s) 398, 491, 962
AcuI CTGAAG 1 cut(s) 825
AfaI GTAC 3 cut(s) 387, 575, 643
AfiI CCNNNNNNNGG 2 cut(s) 331, 485
AgsI TTSAA 4 cut(s) 700, 772, 1150, 1197
AluBI AGCT 3 cut(s) 594, 719, 1246
AluI AGCT 3 cut(s) 594, 719, 1246
Alw21I GWGCWC 2 cut(s) 721, 1062
Alw44I GTGCAC 1 cut(s) 1058
ApaLI GTGCAC 1 cut(s) 1058
ApeKI GCWGC 6 cut(s) 29, 41, 51, 85, 813, 1246
ApoI RAATTY 3 cut(s) 398, 491, 962
AspS9I GGNCC 2 cut(s) 98, 443
AsuC2I CCSGG 1 cut(s) 1228
AsuHPI GGTGA 3 cut(s) 500, 798, 1222
AsuII TTCGAA 1 cut(s) 991
AvaII GGWCC 2 cut(s) 98, 443
BaeGI GKGCMC 1 cut(s) 1062
BanII GRGCYC 1 cut(s) 721
Bbv12I GWGCWC 2 cut(s) 721, 1062
BbvCI CCTCAGC 1 cut(s) 618
BbvI GCAGC 6 cut(s) 41, 53, 63, 97, 800, 1233
BccI CCATC 2 cut(s) 1048, 1177
BciVI GTATCC 1 cut(s) 297
BclI TGATCA 1 cut(s) 276
BcnI CCSGG 1 cut(s) 1228
BfaI CTAG 1 cut(s) 906
BfmI CTRYAG 2 cut(s) 138, 187
BfuAI ACCTGC 1 cut(s) 180
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 6 cut(s) 30, 42, 52, 86, 814, 1247
BlsI GCNGC 6 cut(s) 31, 43, 53, 87, 815, 1248
Bme1390I CCNGG 1 cut(s) 1228
Bme18I GGWCC 2 cut(s) 98, 443
BmgT120I GGNCC 2 cut(s) 98, 443
BmrFI CCNGG 1 cut(s) 1228
BmrI ACTGGG 1 cut(s) 1134
BmsI GCATC 2 cut(s) 279, 1275
BmuI ACTGGG 1 cut(s) 1134
BplI GAGNNNNNCTC 4 cut(s) 140, 172, 861, 893
Bpu10I CCTNAGC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 991
BpuEI CTTGAG 1 cut(s) 1027
BpuMI CCSGG 1 cut(s) 1228
BsaJI CCNNGG 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 1194, 1224
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 485
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 1129
Bse3DI GCAATG 1 cut(s) 427
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 4 cut(s) 241, 1078, 1169, 1290
BseLI CCNNNNNNNGG 2 cut(s) 331, 485
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 4 cut(s) 306, 609, 615, 678
BseNI ACTGG 1 cut(s) 1129
BseRI GAGGAG 4 cut(s) 170, 729, 1215, 1220
BseSI GKGCMC 1 cut(s) 1062
BseXI GCAGC 6 cut(s) 41, 53, 63, 97, 800, 1233
BsgI GTGCAG 2 cut(s) 94, 553
BsiHKAI GWGCWC 2 cut(s) 721, 1062
BsiSI CCGG 2 cut(s) 134, 1227
BslFI GGGAC 2 cut(s) 90, 1141
BslI CCNNNNNNNGG 2 cut(s) 331, 485
BsmFI GGGAC 2 cut(s) 90, 1141
Bsp119I TTCGAA 1 cut(s) 991
Bsp1286I GDGCHC 2 cut(s) 721, 1062
Bsp143I GATC 2 cut(s) 257, 276
Bsp19I CCATGG 1 cut(s) 144
BspCNI CTCAG 4 cut(s) 307, 610, 616, 679
BspMAI CTGCAG 1 cut(s) 191
BspMI ACCTGC 1 cut(s) 180
BspQI GCTCTTC 1 cut(s) 726
BspT104I TTCGAA 1 cut(s) 991
BsrDI GCAATG 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 1129
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 2 cut(s) 257, 276
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 1166
Bst6I CTCTTC 2 cut(s) 726, 1208
BstBI TTCGAA 1 cut(s) 991
BstC8I GCNNGC 1 cut(s) 1251
BstDEI CTNAG 4 cut(s) 315, 618, 624, 687
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 4 cut(s) 241, 1078, 1169, 1290
BstKTI GATC 2 cut(s) 260, 279
BstMBI GATC 2 cut(s) 257, 276
BstMWI GCNNNNNNNGC 2 cut(s) 38, 915
BstNSI RCATGY 1 cut(s) 922
BstSCI CCNGG 1 cut(s) 1226
BstSFI CTRYAG 2 cut(s) 138, 187
BstSLI GKGCMC 1 cut(s) 1062
BstV1I GCAGC 6 cut(s) 41, 53, 63, 97, 800, 1233
BsuI GTATCC 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 4 cut(s) 241, 1078, 1169, 1290
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 1251
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 98, 443
CseI GACGC 1 cut(s) 547
Csp6I GTAC 3 cut(s) 386, 574, 642
CviAII CATG 9 cut(s) 145, 169, 306, 326, 417, 462, 919, 1016, 1027
CviQI GTAC 3 cut(s) 386, 574, 642
DdeI CTNAG 4 cut(s) 315, 618, 624, 687
DpnI GATC 2 cut(s) 259, 278
DpnII GATC 2 cut(s) 257, 276
Eam1104I CTCTTC 2 cut(s) 726, 1208
EarI CTCTTC 2 cut(s) 726, 1208
Ecl136II GAGCTC 1 cut(s) 719
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 721
Eco47I GGWCC 2 cut(s) 98, 443
Eco53kI GAGCTC 1 cut(s) 719
Eco57I CTGAAG 1 cut(s) 825
EcoICRI GAGCTC 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 98
EcoRI GAATTC 2 cut(s) 398, 491
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 9 cut(s) 148, 172, 309, 329, 420, 465, 922, 1019, 1030
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 985, 1017
FaqI GGGAC 2 cut(s) 90, 1141
FatI CATG 9 cut(s) 144, 168, 305, 325, 416, 461, 918, 1015, 1026
FbaI TGATCA 1 cut(s) 276
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 6 cut(s) 30, 42, 52, 86, 814, 1247
FokI GGATG 4 cut(s) 228, 1085, 1156, 1297
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 6 cut(s) 30, 42, 52, 86, 814, 1247
FspBI CTAG 1 cut(s) 906
GluI GCNGC 6 cut(s) 30, 42, 52, 86, 814, 1247
HapII CCGG 2 cut(s) 134, 1227
HgaI GACGC 1 cut(s) 547
Hin1II CATG 9 cut(s) 148, 172, 309, 329, 420, 465, 922, 1019, 1030
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HinfI GANTC 8 cut(s) 13, 151, 344, 350, 845, 902, 950, 1129
HpaII CCGG 2 cut(s) 134, 1227
HphI GGTGA 3 cut(s) 500, 798, 1222
Hpy166II GTNNAC 4 cut(s) 321, 361, 412, 1060
Hpy188I TCNGA 9 cut(s) 226, 300, 349, 397, 601, 844, 1118, 1240, 1267
Hpy188III TCNNGA 9 cut(s) 255, 261, 274, 280, 441, 562, 1006, 1051, 1197
Hpy8I GTNNAC 4 cut(s) 321, 361, 412, 1060
Hpy99I CGWCG 1 cut(s) 980
HpyAV CCTTC 2 cut(s) 925, 987
HpyCH4III ACNGT 1 cut(s) 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 915
HpyF3I CTNAG 4 cut(s) 315, 618, 624, 687
Hsp92II CATG 9 cut(s) 148, 172, 309, 329, 420, 465, 922, 1019, 1030
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 2 cut(s) 257, 276
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 2 cut(s) 676, 716
Lsp1109I GCAGC 6 cut(s) 41, 53, 63, 97, 800, 1233
LweI GCATC 2 cut(s) 279, 1275
MaeI CTAG 1 cut(s) 906
MaeIII GTNAC 1 cut(s) 690
MalI GATC 2 cut(s) 259, 278
MboI GATC 2 cut(s) 257, 276
MboII GAAGA 3 cut(s) 713, 831, 1225
MfeI CAATTG 2 cut(s) 1066, 1155
MhlI GDGCHC 2 cut(s) 721, 1062
MlyI GAGTC 3 cut(s) 854, 959, 1123
MmeI TCCRAC 1 cut(s) 817
MseI TTAA 2 cut(s) 852, 1311
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 2 cut(s) 134, 1227
MspR9I CCNGG 1 cut(s) 1228
MunI CAATTG 2 cut(s) 1066, 1155
MwoI GCNNNNNNNGC 2 cut(s) 38, 915
NciI CCSGG 1 cut(s) 1228
NcoI CCATGG 1 cut(s) 144
NdeII GATC 2 cut(s) 257, 276
NlaIII CATG 9 cut(s) 148, 172, 309, 329, 420, 465, 922, 1019, 1030
NspI RCATGY 1 cut(s) 922
NspV TTCGAA 1 cut(s) 991
PaqCI CACCTGC 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 726
PfeI GAWTC 5 cut(s) 13, 151, 344, 350, 902
PflFI GACNNNGTC 1 cut(s) 1132
PkrI GCNGC 6 cut(s) 31, 43, 53, 87, 815, 1248
PleI GAGTC 3 cut(s) 853, 958, 1123
PpsI GAGTC 3 cut(s) 853, 958, 1123
PpuMI RGGWCCY 1 cut(s) 98
PsiI TTATAA 2 cut(s) 761, 1086
Psp124BI GAGCTC 1 cut(s) 721
Psp5II RGGWCCY 1 cut(s) 98
PspPI GGNCC 2 cut(s) 98, 443
PspPPI RGGWCCY 1 cut(s) 98
PstI CTGCAG 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 1132
RsaI GTAC 3 cut(s) 387, 575, 643
RsaNI GTAC 3 cut(s) 386, 574, 642
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 721
SapI GCTCTTC 1 cut(s) 726
SaqAI TTAA 2 cut(s) 852, 1311
SatI GCNGC 6 cut(s) 30, 42, 52, 86, 814, 1247
Sau3AI GATC 2 cut(s) 257, 276
Sau96I GGNCC 2 cut(s) 98, 443
SchI GAGTC 3 cut(s) 854, 959, 1123
ScrFI CCNGG 1 cut(s) 1228
SduI GDGCHC 2 cut(s) 721, 1062
SfaNI GCATC 2 cut(s) 279, 1275
SfcI CTRYAG 2 cut(s) 138, 187
SfuI TTCGAA 1 cut(s) 991
SinI GGWCC 2 cut(s) 98, 443
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 1006
SmoI CTYRAG 1 cut(s) 1006
SspMI CTAG 1 cut(s) 906
SstI GAGCTC 1 cut(s) 721
StyD4I CCNGG 1 cut(s) 1226
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 1166
TaqI TCGA 2 cut(s) 978, 991
TaqII GACCGA 1 cut(s) 1122
TatI WGTACW 1 cut(s) 573
TfiI GAWTC 5 cut(s) 13, 151, 344, 350, 902
Tru1I TTAA 2 cut(s) 852, 1311
Tru9I TTAA 2 cut(s) 852, 1311
TseI GCWGC 6 cut(s) 29, 41, 51, 85, 813, 1246
TspDTI ATGAA 9 cut(s) 17, 26, 185, 383, 484, 713, 915, 944, 1032
Tth111I GACNNNGTC 1 cut(s) 1132
VneI GTGCAC 1 cut(s) 1058
VpaK11BI GGWCC 2 cut(s) 98, 443
XapI RAATTY 3 cut(s) 398, 491, 962
XceI RCATGY 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.