Rorug04G0158700

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000298
Physical Location & Seq
Forward (+)
27675509 .. 27679685
4177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0158700.1

Sequence Viewer

Length: 525 bp
ATGGTCTCAGAGGATGGAACTGCTCCGGCTACTACACGAATGGGGAGAGGGAATTTCAGTAGCAAGATGATCGATTTAGCTATGAAGACCACCTCAAACTCTTCGTCGACAACTCTAGATCGATCAAGACCAAGCTTACAGGACATCTACAATCATTTTGTAAGTGATGCAACTGGCCGGAGGAGCAACTTTATGCAAACAGAGATAGGGGTCGGAATTCATGGTGTCCTACTTTTCATAACATTGATTGGAAAGAGAACGGGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGATCCGACCAACAGCAGAGAGTTTCTCCACTGTTTGAGATTTGCAATCGACATCAATCCGGACAAAGATTGGGTGAAGGAATGCACGTCAGCCTTGCTGCGTTTTGCGAAGAGGCCTCATTTGAGCGAGCAAAAAAATGGGTGCTAGAACTGAAATCACAAGGTATTGCTCGCACTTTCTTGCTGTCTAAACTCACTCAGTCCTTGGCTGCTTTAAACAATTTTAGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

174

Amino Acids

18.79

Weight (kDa)

9.62

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 107
AccIII TCCGGA 1 cut(s) 350
AclWI GGATC 2 cut(s) 288, 301
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 2 cut(s) 52, 216
AjiI CACGTC 1 cut(s) 379
AluBI AGCT 2 cut(s) 80, 135
AluI AGCT 2 cut(s) 80, 135
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 2 cut(s) 288, 301
Aor13HI TCCGGA 1 cut(s) 350
AoxI GGCC 2 cut(s) 175, 405
ApeKI GCWGC 2 cut(s) 389, 500
ApoI RAATTY 2 cut(s) 52, 216
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AsuHPI GGTGA 1 cut(s) 377
BamHI GGATCC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 376, 487
BccI CCATC 1 cut(s) 8
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 2 cut(s) 116, 437
BisI GCNGC 2 cut(s) 390, 501
BlsI GCNGC 2 cut(s) 391, 502
BmgBI CACGTC 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 295
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 92
BplI GAGNNNNNCTC 2 cut(s) 301, 333
Bsa29I ATCGAT 2 cut(s) 72, 121
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 495
BsaWI WCCGGW 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 350
BseCI ATCGAT 2 cut(s) 72, 121
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 21, 503
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 8 cut(s) 196, 285, 288, 291, 294, 297, 300, 303
BseXI GCAGC 2 cut(s) 376, 487
BshFI GGCC 2 cut(s) 177, 407
BshVI ATCGAT 2 cut(s) 72, 121
BsiSI CCGG 3 cut(s) 26, 178, 351
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 2 cut(s) 177, 407
Bso31I GGTCTC 1 cut(s) 10
Bsp13I TCCGGA 1 cut(s) 350
Bsp143I GATC 4 cut(s) 69, 118, 122, 293
BspANI GGCC 2 cut(s) 177, 407
BspCNI CTCAG 2 cut(s) 20, 502
BspDI ATCGAT 2 cut(s) 72, 121
BspEI TCCGGA 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 295
BspPI GGATC 2 cut(s) 288, 301
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 4 cut(s) 69, 118, 122, 293
BssT1I CCWWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 324
Bst6I CTCTTC 2 cut(s) 106, 396
BstC8I GCNNGC 2 cut(s) 420, 463
BstDEI CTNAG 2 cut(s) 7, 489
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 4 cut(s) 72, 121, 125, 296
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 4 cut(s) 69, 118, 122, 293
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 376, 487
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
Bsu15I ATCGAT 2 cut(s) 72, 121
BsuRI GGCC 2 cut(s) 177, 407
BsuTUI ATCGAT 2 cut(s) 72, 121
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 420, 463
ClaI ATCGAT 2 cut(s) 72, 121
CviAII CATG 1 cut(s) 221
CviJI RGCY 8 cut(s) 29, 80, 135, 177, 384, 407, 500, 520
CviKI_1 RGCY 8 cut(s) 29, 80, 135, 177, 384, 407, 500, 520
DdeI CTNAG 2 cut(s) 7, 489
DpnI GATC 4 cut(s) 71, 120, 124, 295
DpnII GATC 4 cut(s) 69, 118, 122, 293
DraI TTTAAA 1 cut(s) 507
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 106, 396
EarI CTCTTC 2 cut(s) 106, 396
Eco130I CCWWGG 1 cut(s) 495
Eco147I AGGCCT 1 cut(s) 407
Eco31I GGTCTC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 1 cut(s) 224
FaiI YATR 5 cut(s) 83, 194, 222, 239, 523
FatI CATG 1 cut(s) 220
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 390, 501
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 390, 501
FspBI CTAG 2 cut(s) 116, 437
GluI GCNGC 2 cut(s) 390, 501
HaeIII GGCC 2 cut(s) 177, 407
HapII CCGG 3 cut(s) 26, 178, 351
Hin1II CATG 1 cut(s) 224
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 133
HpaII CCGG 3 cut(s) 26, 178, 351
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 3 cut(s) 10, 215, 298
Hpy188III TCNNGA 3 cut(s) 116, 126, 351
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 260, 362
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 4 cut(s) 170, 196, 336, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 2 cut(s) 7, 489
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 1 cut(s) 224
Kpn2I TCCGGA 1 cut(s) 350
Kzo9I GATC 4 cut(s) 69, 118, 122, 293
LmnI GCTCC 2 cut(s) 28, 183
LpnPI CCDG 5 cut(s) 39, 125, 159, 191, 364
Lsp1109I GCAGC 2 cut(s) 376, 487
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 116, 437
MaeII ACGT 1 cut(s) 378
MalI GATC 4 cut(s) 71, 120, 124, 295
MboI GATC 4 cut(s) 69, 118, 122, 293
MboII GAAGA 3 cut(s) 93, 97, 413
MflI RGATCY 1 cut(s) 293
MluCI AATT 3 cut(s) 52, 216, 511
MmeI TCCRAC 2 cut(s) 193, 321
MroI TCCGGA 1 cut(s) 350
MseI TTAA 1 cut(s) 506
MspI CCGG 3 cut(s) 26, 178, 351
Mva1269I GAATGC 1 cut(s) 378
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 4 cut(s) 69, 118, 122, 293
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 295
PceI AGGCCT 1 cut(s) 407
PctI GAATGC 1 cut(s) 378
PkrI GCNGC 2 cut(s) 391, 502
PspN4I GGNNCC 1 cut(s) 295
PsuI RGATCY 1 cut(s) 293
SalI GTCGAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 2 cut(s) 390, 501
Sau3AI GATC 4 cut(s) 69, 118, 122, 293
SetI ASST 5 cut(s) 82, 95, 137, 381, 457
SfaNI GCATC 1 cut(s) 157
Sse9I AATT 3 cut(s) 52, 216, 511
SseBI AGGCCT 1 cut(s) 407
SspMI CTAG 2 cut(s) 116, 437
StuI AGGCCT 1 cut(s) 407
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 1 cut(s) 381
TaqI TCGA 4 cut(s) 72, 107, 121, 340
TasI AATT 3 cut(s) 52, 216, 511
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TscAI CASTG 1 cut(s) 327
TseI GCWGC 2 cut(s) 389, 500
TspDTI ATGAA 3 cut(s) 98, 209, 226
TspRI CASTG 1 cut(s) 327
XapI RAATTY 2 cut(s) 52, 216
XbaI TCTAGA 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 2 cut(s) 116, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.