Prupe.1G147100_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000298
Physical Location & Seq
Reverse (-)
11558727 .. 11561806
3080 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G147100.1

Sequence Viewer

Length: 1182 bp
ATGGCAACCCAACGGTTCCTGCAACTTCCACTGGGTATAACCATGGACATCCTCTCAAGGCTCTCTGTCAAGACCCTTTTCAACTGCAGGTGCGTGTGCAAAGCGTGGCTTTCTATAATCTCTGACCCTCAGTTTACTCATCTCCACGCTTCAAGATCACCCTTTGGCATCTTGATCGAGATCTTCCTTCCTCCCCCTCTAACAAAACCAATGGAACTTTATTTTACCCATCTACAAGCAGAAGCATGTGCTGCTCCTGGTTCAGATTTGCAGCTCGAGGAAATAACGTTTTCTCCCAGAAATACCCTACCTCCCGTTGACGACGCCATGCCCGAATTTCGCTTGATAAACTCATGTAATGGTCTGCTTTGTTTTGGAGCTAATGAAGGCTTTCCCCTGTATGTGTGCAACCCTGTTTTGGGCGAGTACATCACCATTCCACCTGCTAATAGAAACGACAAGTGGCTTATTGTGGGACTTGGTTTTAGCGTCAGGACCAATGTGTACAAGGTGTTTCAGTTGAACAACCCGGACACTGAGGCTGAGATTTACACCATTGGCGCAGGAGGGGCATGGAGAAGCATTGGACCTCCTCCTCCTGGGGATTTTAATAACTTATCGTTCAATAATTTTCTTCATGGAGCTGTTCATTGGATTCCCTATGGTGGTAGAAGTATAAGTTCCAAGGTTATACAATCTTTCGACTTTGAAAGAGAACAATTCCGGCCATTATCACTACCTAGTTTGCTAGCAAAGAATCAATTTCCGTATAGTTTGACATTGGAAGTGATAGGAGGTTGTCTCCATCTATGTGTGCTTGAGGATGATGCTAGCAAACTGGACATGTGGGTTATGAAGGAGTATGGTGTGCAAGAGTCTTGGACTAAAATTCTTGCTTTTGAAAACCTGTTTGGCCTTTGGACGGAACGAATCTGTGATAGGTATAATCCAATTATGTTTTTGAGCACTGGGGAAATCCTGATGTTCTACAACTTTGAGCGTGTAGTTTGTTATAATCAAGAAGAAAAGAGCTTCAGAAAAATAAAGATTCCTTCGACTAAGAAGTGGTCATTTCAGCCAATTGCTTACAGTCCATCCTTTCTTTCGCTCTATGATATTGCAAAGGCAGAGGACGTGAAGAGGGTTGGCAGCAGTAAGAGATATAACAAGCTGCCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

394

Amino Acids

44.64

Weight (kDa)

6.61

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1014
AarI CACCTGC 2 cut(s) 78, 451
Acc36I ACCTGC 2 cut(s) 78, 451
AclI AACGTT 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 725
AcsI RAATTY 2 cut(s) 335, 888
AcuI CTGAAG 1 cut(s) 1018
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 428, 506
AfiI CCNNNNNNNGG 5 cut(s) 418, 419, 599, 665, 922
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 6 cut(s) 82, 153, 523, 625, 710, 902
AjiI CACGTC 1 cut(s) 1135
AjnI CCWGG 2 cut(s) 256, 598
AjuI GAANNNNNNNTTGG 2 cut(s) 894, 926
AluBI AGCT 5 cut(s) 274, 380, 644, 1032, 1171
AluI AGCT 5 cut(s) 274, 380, 644, 1032, 1171
Alw21I GWGCWC 1 cut(s) 968
Alw26I GTCTC 1 cut(s) 806
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 2 cut(s) 725, 913
ApeKI GCWGC 4 cut(s) 251, 271, 1149, 1171
ApoI RAATTY 2 cut(s) 335, 888
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 563
AspS9I GGNCC 2 cut(s) 495, 587
AsuC2I CCSGG 1 cut(s) 530
AsuHPI GGTGA 2 cut(s) 150, 424
AsuNHI GCTAGC 2 cut(s) 748, 830
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 2 cut(s) 495, 587
Bbv12I GWGCWC 1 cut(s) 968
BbvI GCAGC 4 cut(s) 238, 283, 1158, 1161
BccI CCATC 3 cut(s) 237, 813, 1102
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 2 cut(s) 258, 600
BcnI CCSGG 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 806
BfaI CTAG 3 cut(s) 741, 749, 831
BfmI CTRYAG 1 cut(s) 85
BfuAI ACCTGC 2 cut(s) 78, 451
BglII AGATCT 1 cut(s) 180
BisI GCNGC 4 cut(s) 252, 272, 1150, 1172
BlsI GCNGC 4 cut(s) 253, 273, 1151, 1173
Bme1390I CCNGG 3 cut(s) 258, 530, 600
Bme18I GGWCC 2 cut(s) 495, 587
BmeT110I CYCGRG 1 cut(s) 275
BmgBI CACGTC 1 cut(s) 1135
BmgT120I GGNCC 2 cut(s) 495, 587
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 3 cut(s) 258, 530, 600
BmrI ACTGGG 2 cut(s) 41, 978
BmsI GCATC 2 cut(s) 177, 817
BmtI GCTAGC 2 cut(s) 752, 834
BmuI ACTGGG 2 cut(s) 41, 978
BplI GAGNNNNNCTC 2 cut(s) 786, 818
BpuEI CTTGAG 2 cut(s) 40, 839
BpuMI CCSGG 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 3 cut(s) 42, 599, 684
BsaXI ACNNNNNCTCC 4 cut(s) 277, 295, 307, 325
Bsc4I CCNNNNNNNGG 5 cut(s) 418, 419, 599, 665, 922
Bse1I ACTGG 3 cut(s) 36, 843, 973
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 2 cut(s) 258, 600
BseDI CCNNGG 3 cut(s) 42, 599, 684
BseGI GGATG 3 cut(s) 48, 829, 1094
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 5 cut(s) 418, 419, 599, 665, 922
BseMII CTCAG 3 cut(s) 143, 528, 534
BseNI ACTGG 3 cut(s) 36, 843, 973
BseRI GAGGAG 2 cut(s) 582, 585
BseXI GCAGC 4 cut(s) 238, 283, 1158, 1161
BshFI GGCC 2 cut(s) 727, 915
BsiHKAI GWGCWC 1 cut(s) 968
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 2 cut(s) 530, 724
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 5 cut(s) 418, 419, 599, 665, 922
BsmAI GTCTC 1 cut(s) 806
BsmFI GGGAC 1 cut(s) 489
BsnI GGCC 2 cut(s) 727, 915
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 968
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 3 cut(s) 155, 174, 180
Bsp19I CCATGG 1 cut(s) 42
BspANI GGCC 2 cut(s) 727, 915
BspCNI CTCAG 3 cut(s) 142, 529, 535
BspLI GGNNCC 1 cut(s) 17
BspMAI CTGCAG 1 cut(s) 89
BspMI ACCTGC 2 cut(s) 78, 451
BspOI GCTAGC 2 cut(s) 752, 834
BsrGI TGTACA 1 cut(s) 504
BsrI ACTGG 3 cut(s) 36, 843, 973
BssECI CCNNGG 3 cut(s) 42, 599, 684
BssMI GATC 3 cut(s) 155, 174, 180
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 2 cut(s) 42, 684
Bst2UI CCWGG 2 cut(s) 258, 600
Bst4CI ACNGT 2 cut(s) 15, 1091
Bst6I CTCTTC 1 cut(s) 1133
BstACI GRCGYC 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 251
BstAUI TGTACA 1 cut(s) 504
BstC8I GCNNGC 2 cut(s) 750, 832
BstDEI CTNAG 4 cut(s) 129, 537, 543, 1059
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 3 cut(s) 48, 829, 1094
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 3 cut(s) 158, 177, 183
BstMAI GTCTC 1 cut(s) 806
BstMBI GATC 3 cut(s) 155, 174, 180
BstMWI GCNNNNNNNGC 2 cut(s) 251, 569
BstNI CCWGG 2 cut(s) 258, 600
BstNSI RCATGY 2 cut(s) 249, 847
BstSCI CCNGG 3 cut(s) 256, 528, 598
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 4 cut(s) 238, 283, 1158, 1161
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 2 cut(s) 727, 915
BtgI CCRYGG 1 cut(s) 42
BtrI CACGTC 1 cut(s) 1135
BtsCI GGATG 3 cut(s) 48, 829, 1094
BtsIMutI CAGTG 3 cut(s) 29, 534, 966
BveI ACCTGC 2 cut(s) 78, 451
Cac8I GCNNGC 2 cut(s) 750, 832
CfoI GCGC 1 cut(s) 563
Cfr13I GGNCC 2 cut(s) 495, 587
CseI GACGC 2 cut(s) 332, 478
Csp6I GTAC 2 cut(s) 427, 505
CviAII CATG 7 cut(s) 43, 246, 328, 354, 573, 638, 844
CviQI GTAC 2 cut(s) 427, 505
DdeI CTNAG 4 cut(s) 129, 537, 543, 1059
DpnI GATC 3 cut(s) 157, 176, 182
DpnII GATC 3 cut(s) 155, 174, 180
EaeI YGGCCR 1 cut(s) 725
Eam1104I CTCTTC 1 cut(s) 1133
EarI CTCTTC 1 cut(s) 1133
Eco130I CCWWGG 2 cut(s) 42, 684
Eco47I GGWCC 2 cut(s) 495, 587
Eco57I CTGAAG 1 cut(s) 1018
Eco88I CYCGRG 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 256, 598
EcoT14I CCWWGG 2 cut(s) 42, 684
ErhI CCWWGG 2 cut(s) 42, 684
FaeI CATG 7 cut(s) 46, 249, 331, 357, 576, 641, 847
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 1 cut(s) 489
FatI CATG 7 cut(s) 42, 245, 327, 353, 572, 637, 843
Fnu4HI GCNGC 4 cut(s) 252, 272, 1150, 1172
FokI GGATG 3 cut(s) 35, 836, 1081
Fsp4HI GCNGC 4 cut(s) 252, 272, 1150, 1172
FspBI CTAG 3 cut(s) 741, 749, 831
GlaI GCGC 1 cut(s) 562
GluI GCNGC 4 cut(s) 252, 272, 1150, 1172
HaeIII GGCC 2 cut(s) 727, 915
HapII CCGG 2 cut(s) 530, 724
HgaI GACGC 2 cut(s) 332, 478
HhaI GCGC 1 cut(s) 563
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 7 cut(s) 46, 249, 331, 357, 576, 641, 847
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 5 cut(s) 655, 757, 875, 930, 1048
HpaII CCGG 2 cut(s) 530, 724
HphI GGTGA 2 cut(s) 150, 424
Hpy166II GTNNAC 3 cut(s) 135, 319, 505
Hpy188I TCNGA 3 cut(s) 124, 265, 1037
Hpy188III TCNNGA 7 cut(s) 70, 153, 172, 178, 493, 979, 1019
Hpy8I GTNNAC 3 cut(s) 135, 319, 505
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 4 cut(s) 197, 380, 850, 1062
HpyCH4III ACNGT 2 cut(s) 15, 1091
HpyCH4IV ACGT 2 cut(s) 287, 1134
HpyCH4V TGCA 7 cut(s) 22, 87, 99, 271, 408, 871, 1121
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 569
HpyF3I CTNAG 4 cut(s) 129, 537, 543, 1059
HpySE526I ACGT 2 cut(s) 287, 1134
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 7 cut(s) 46, 249, 331, 357, 576, 641, 847
HspAI GCGC 1 cut(s) 561
Kzo9I GATC 3 cut(s) 155, 174, 180
LmnI GCTCC 3 cut(s) 259, 377, 641
Lsp1109I GCAGC 4 cut(s) 238, 283, 1158, 1161
LweI GCATC 2 cut(s) 177, 817
MaeI CTAG 3 cut(s) 741, 749, 831
MaeII ACGT 2 cut(s) 287, 1134
MalI GATC 3 cut(s) 157, 176, 182
MboI GATC 3 cut(s) 155, 174, 180
MboII GAAGA 4 cut(s) 175, 626, 1034, 1150
MfeI CAATTG 1 cut(s) 1080
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 968
MluCI AATT 7 cut(s) 335, 628, 719, 761, 888, 951, 1080
MlyI GAGTC 1 cut(s) 884
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 1 cut(s) 609
MslI CAYNNNNRTG 1 cut(s) 810
MspI CCGG 2 cut(s) 530, 724
MspR9I CCNGG 3 cut(s) 258, 530, 600
MunI CAATTG 1 cut(s) 1080
MvaI CCWGG 2 cut(s) 258, 600
MwoI GCNNNNNNNGC 2 cut(s) 251, 569
NciI CCSGG 1 cut(s) 530
NcoI CCATGG 1 cut(s) 42
NdeII GATC 3 cut(s) 155, 174, 180
NheI GCTAGC 2 cut(s) 748, 830
NlaIII CATG 7 cut(s) 46, 249, 331, 357, 576, 641, 847
NlaIV GGNNCC 1 cut(s) 17
NspI RCATGY 2 cut(s) 249, 847
PaeR7I CTCGAG 1 cut(s) 275
PaqCI CACCTGC 2 cut(s) 78, 451
PciI ACATGT 1 cut(s) 843
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 4 cut(s) 655, 757, 930, 1048
PkrI GCNGC 4 cut(s) 253, 273, 1151, 1173
PleI GAGTC 1 cut(s) 883
PpsI GAGTC 1 cut(s) 883
PscI ACATGT 1 cut(s) 843
PsiI TTATAA 1 cut(s) 1014
Psp1406I AACGTT 1 cut(s) 287
Psp6I CCWGG 2 cut(s) 256, 598
PspGI CCWGG 2 cut(s) 256, 598
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 2 cut(s) 495, 587
PspXI VCTCGAGB 1 cut(s) 275
PstI CTGCAG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 2 cut(s) 428, 506
RsaNI GTAC 2 cut(s) 427, 505
RseI CAYNNNNRTG 1 cut(s) 810
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 4 cut(s) 252, 272, 1150, 1172
Sau3AI GATC 3 cut(s) 155, 174, 180
Sau96I GGNCC 2 cut(s) 495, 587
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 3 cut(s) 258, 530, 600
SduI GDGCHC 1 cut(s) 968
SfaNI GCATC 2 cut(s) 177, 817
SfcI CTRYAG 1 cut(s) 85
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 2 cut(s) 495, 587
SlaI CTCGAG 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 810
SmlI CTYRAG 3 cut(s) 55, 275, 818
SmoI CTYRAG 3 cut(s) 55, 275, 818
Sse9I AATT 7 cut(s) 335, 628, 719, 761, 888, 951, 1080
SspMI CTAG 3 cut(s) 741, 749, 831
StyD4I CCNGG 3 cut(s) 256, 528, 598
StyI CCWWGG 2 cut(s) 42, 684
TaaI ACNGT 2 cut(s) 15, 1091
TaiI ACGT 2 cut(s) 290, 1137
TaqI TCGA 4 cut(s) 177, 276, 702, 1055
TasI AATT 7 cut(s) 335, 628, 719, 761, 888, 951, 1080
TatI WGTACW 2 cut(s) 426, 504
TfiI GAWTC 4 cut(s) 655, 757, 930, 1048
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 3 cut(s) 36, 541, 973
TseI GCWGC 4 cut(s) 251, 271, 1149, 1171
TspDTI ATGAA 4 cut(s) 399, 626, 638, 869
TspGWI ACGGA 2 cut(s) 756, 938
TspRI CASTG 3 cut(s) 36, 541, 973
VpaK11BI GGWCC 2 cut(s) 495, 587
XapI RAATTY 2 cut(s) 335, 888
XceI RCATGY 2 cut(s) 249, 847
XhoI CTCGAG 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 3 cut(s) 741, 749, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.