Rh6BG417700

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000298
Physical Location & Seq
Forward (+)
64239202 .. 64239678
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG417700.1

Sequence Viewer

Length: 477 bp
ATGATAAACTCATGCAATGGCTTGCTTCTTTTGTCTGCCGGCTCTAGAGTTTTGTATGTGTGCGATCCAATTTTGGGTGAGTACATAACCATTCCACCACCTCCTAAAGGTTGGGCAATGCCACGGTATGATTTTGTTGGACTTGGTTTGAGTATTGGGACTAATTGTTGCGAACCACTTTTCCATACGTCGACTCACTACACTACATTGACTACTTTGACGACCTTGAGGCTAACGTATACACCATTGGTACCGGTGTTTGGAGAAGAATTGGAAAGCCGCCCCACAACTATAACCAGCTGTTACCACCTTTCAATGCTTTCTCTACATGGATGTCTCCATTGGCTTTCCTCCATGGGTGAGGAAACCATACATTCGTTTAACTTTGAAAGAGAGCAGTTTCAAACACTGCCTCTACATAGCTCCTTTAGACCATCACACCAAGGGTGTTTGAATTTGGGAGTGTTAGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

158

Amino Acids

17.56

Weight (kDa)

5.84

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 3 - 148 1.3e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 250
AccI GTMKAC 2 cut(s) 191, 239
AciI CCGC 1 cut(s) 280
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 454
AfaI GTAC 2 cut(s) 83, 252
AfiI CCNNNNNNNGG 3 cut(s) 74, 107, 260
AgeI ACCGGT 1 cut(s) 253
AgsI TTSAA 4 cut(s) 315, 389, 404, 454
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
AluBI AGCT 2 cut(s) 300, 423
AluI AGCT 2 cut(s) 300, 423
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 454
AsiGI ACCGGT 1 cut(s) 253
Asp718I GGTACC 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 89, 371
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BanI GGYRCC 1 cut(s) 250
BccI CCATC 2 cut(s) 442, 464
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 45
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 247
BsaJI CCNNGG 3 cut(s) 122, 354, 442
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 107, 260
Bse118I RCCGGY 2 cut(s) 38, 253
Bse3DI GCAATG 2 cut(s) 22, 123
BseDI CCNNGG 3 cut(s) 122, 354, 442
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 3 cut(s) 74, 107, 260
BseMI GCAATG 2 cut(s) 22, 123
BshNI GGYRCC 1 cut(s) 250
BshTI ACCGGT 1 cut(s) 253
BsiSI CCGG 2 cut(s) 39, 254
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 3 cut(s) 74, 107, 260
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 64
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 250
BsrDI GCAATG 2 cut(s) 22, 123
BsrFI RCCGGY 2 cut(s) 38, 253
BssAI RCCGGY 2 cut(s) 38, 253
BssECI CCNNGG 3 cut(s) 122, 354, 442
BssMI GATC 1 cut(s) 64
BssNAI GTATAC 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 354, 442
Bst1107I GTATAC 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 23, 40
BstDSI CCRYGG 2 cut(s) 122, 354
BstENI CCTNNNNNAGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 338
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 1 cut(s) 64
BstZ17I GTATAC 1 cut(s) 240
BtgI CCRYGG 2 cut(s) 122, 354
BtsCI GGATG 1 cut(s) 338
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 1 cut(s) 407
Cac8I GCNNGC 2 cut(s) 23, 40
Cfr10I RCCGGY 2 cut(s) 38, 253
Csp6I GTAC 2 cut(s) 82, 251
CspAI ACCGGT 1 cut(s) 253
CviAII CATG 3 cut(s) 12, 329, 355
CviJI RGCY 7 cut(s) 21, 42, 232, 279, 300, 346, 423
CviKI_1 RGCY 7 cut(s) 21, 42, 232, 279, 300, 346, 423
CviQI GTAC 2 cut(s) 82, 251
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eco130I CCWWGG 2 cut(s) 354, 442
EcoNI CCTNNNNNAGG 1 cut(s) 105
EcoT14I CCWWGG 2 cut(s) 354, 442
ErhI CCWWGG 2 cut(s) 354, 442
FaeI CATG 3 cut(s) 15, 332, 358
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 11, 328, 354
FblI GTMKAC 2 cut(s) 191, 239
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 1 cut(s) 45
GluI GCNGC 1 cut(s) 280
HapII CCGG 2 cut(s) 39, 254
Hin1II CATG 3 cut(s) 15, 332, 358
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 1 cut(s) 193
HpaII CCGG 2 cut(s) 39, 254
HphI GGTGA 2 cut(s) 89, 371
Hpy166II GTNNAC 2 cut(s) 192, 240
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 2 cut(s) 192, 240
Hpy99I CGWCG 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 2 cut(s) 188, 236
HpyCH4V TGCA 1 cut(s) 15
HpySE526I ACGT 2 cut(s) 188, 236
Hsp92II CATG 3 cut(s) 15, 332, 358
KpnI GGTACC 1 cut(s) 254
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 428
LpnPI CCDG 3 cut(s) 52, 267, 310
MaeI CTAG 1 cut(s) 45
MaeII ACGT 2 cut(s) 188, 236
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 278
MluCI AATT 4 cut(s) 69, 163, 269, 454
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 5 cut(s) 111, 222, 355, 361, 423
MroNI GCCGGC 1 cut(s) 38
MseI TTAA 2 cut(s) 381, 475
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 2 cut(s) 39, 254
NaeI GCCGGC 1 cut(s) 40
NcoI CCATGG 1 cut(s) 354
NdeII GATC 1 cut(s) 64
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 3 cut(s) 15, 332, 358
NlaIV GGNNCC 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 40
PinAI ACCGGT 1 cut(s) 253
PkrI GCNGC 1 cut(s) 281
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 2 cut(s) 83, 252
RsaNI GTAC 2 cut(s) 82, 251
SalI GTCGAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 381, 475
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 1 cut(s) 187
SetI ASST 8 cut(s) 103, 112, 191, 227, 239, 302, 312, 425
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 4 cut(s) 69, 163, 269, 454
SsiI CCGC 1 cut(s) 280
SspMI CTAG 1 cut(s) 45
StyI CCWWGG 2 cut(s) 354, 442
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 2 cut(s) 191, 239
TaqI TCGA 1 cut(s) 191
TasI AATT 4 cut(s) 69, 163, 269, 454
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 381, 475
Tru9I TTAA 2 cut(s) 381, 475
TscAI CASTG 1 cut(s) 414
TspRI CASTG 1 cut(s) 414
XagI CCTNNNNNAGG 1 cut(s) 105
XapI RAATTY 1 cut(s) 454
XbaI TCTAGA 1 cut(s) 44
XmiI GTMKAC 2 cut(s) 191, 239
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.