Prupe.6G154200_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000298
Physical Location & Seq
Reverse (-)
13425134 .. 13425912
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G154200.1

Sequence Viewer

Length: 744 bp
ATGGACATCCTCTTAAGGCTCTCTGTCAAGACCCTCTTCAACTGCAGGTGCGTGTGCAAGGCGTGGCTTTTTATAATCTCTTACCCTCAGTTTACTCATCCCCATGCTTCAAGATCACCCTTTGGCATCTTGATCGAGACCTTCCTCCCTCCCCCTCTAACAAAACCAATGGAACTTTATTTTACCCATCTGGAACTCGAGGAAATAACGTTTTCTCCCGGAAATATTCTACCGCCAGTTGACGCTGCCATGCCAGAATTTTGCTTGATAAACTCATGTAATGGTCTGCTTTGTTTTGGAGCTAATGAAGGCTTTCCCCTGTTTGTGTGCAACCCTGTTTTGGGGGAGTACATCACCATTCCACCTGCTAATAGAAACGACAAGTGGCTTATTGTTGGACTTGGTTTTTGCATTGGGACCAATGTGTACAAGGTGTTTCAGTTGAACAACCCGGACACTGAGGCTGAGATTTACACCATTGGCGCAGGAGGAGCATGGAGAAGCATTGGACCCCCTCCTCCTGGGGATTTTAATAACTTATTGTTCAATAATTTTCTTCATGGAGCTGTTCATTGGATTCCCTATGGTGGTAGAAGTACAAGTTCCCAGGTTATACAATCTTTCGACTTTGAAAGAGAACAATTTCGGCCATTATCACTACCTAGTTTGCTAGCAAAGAATGAATTTCTGTATAGTTTGACATTGGAAGTGCTAGGCGGAAACAAAATAGAATTTTTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

248

Amino Acids

27.68

Weight (kDa)

5.35

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AarI CACCTGC 2 cut(s) 36, 373
Acc36I ACCTGC 2 cut(s) 36, 373
AciI CCGC 2 cut(s) 233, 717
AclI AACGTT 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 647
AcsI RAATTY 3 cut(s) 257, 683, 731
AfaI GTAC 3 cut(s) 350, 428, 598
AfiI CCNNNNNNNGG 4 cut(s) 340, 341, 521, 587
AflII CTTAAG 1 cut(s) 13
AgsI TTSAA 5 cut(s) 40, 111, 445, 547, 632
AjnI CCWGG 2 cut(s) 520, 606
AluBI AGCT 2 cut(s) 302, 566
AluI AGCT 2 cut(s) 302, 566
Alw26I GTCTC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 3 cut(s) 257, 683, 731
ArsI GACNNNNNNTTYG 2 cut(s) 390, 422
Asp700I GAANNNNTTC 2 cut(s) 312, 642
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 2 cut(s) 417, 509
AsuC2I CCSGG 2 cut(s) 219, 452
AsuHPI GGTGA 2 cut(s) 108, 346
AsuNHI GCTAGC 1 cut(s) 670
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 2 cut(s) 417, 509
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 522, 608
BcnI CCSGG 2 cut(s) 219, 452
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 3 cut(s) 663, 671, 713
BfmI CTRYAG 1 cut(s) 43
BfrI CTTAAG 1 cut(s) 13
BfuAI ACCTGC 2 cut(s) 36, 373
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 4 cut(s) 219, 452, 522, 608
Bme18I GGWCC 2 cut(s) 417, 509
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 417, 509
BmiI GGNNCC 2 cut(s) 418, 511
BmrFI CCNGG 4 cut(s) 219, 452, 522, 608
BmsI GCATC 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 674
BpuMI CCSGG 2 cut(s) 219, 452
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 521, 606
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 4 cut(s) 340, 341, 521, 587
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 2 cut(s) 522, 608
BseDI CCNNGG 2 cut(s) 521, 606
BseGI GGATG 2 cut(s) 6, 97
BseLI CCNNNNNNNGG 4 cut(s) 340, 341, 521, 587
BseMII CTCAG 3 cut(s) 101, 450, 456
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 504, 507
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 2 cut(s) 219, 452
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 4 cut(s) 340, 341, 521, 587
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 1 cut(s) 649
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 2 cut(s) 113, 132
BspACI CCGC 2 cut(s) 233, 717
BspANI GGCC 1 cut(s) 649
BspCNI CTCAG 3 cut(s) 100, 451, 457
BspLI GGNNCC 2 cut(s) 418, 511
BspMAI CTGCAG 1 cut(s) 47
BspMI ACCTGC 2 cut(s) 36, 373
BspOI GCTAGC 1 cut(s) 674
BspTI CTTAAG 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 131
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 521, 606
BssMI GATC 2 cut(s) 113, 132
Bst2UI CCWGG 2 cut(s) 522, 608
Bst6I CTCTTC 1 cut(s) 41
BstAFI CTTAAG 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 3 cut(s) 87, 459, 465
BstF5I GGATG 2 cut(s) 6, 97
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 2 cut(s) 116, 135
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 113, 132
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 2 cut(s) 522, 608
BstSCI CCNGG 4 cut(s) 217, 450, 520, 606
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 649
BtsCI GGATG 2 cut(s) 6, 97
BtsIMutI CAGTG 1 cut(s) 456
BveI ACCTGC 2 cut(s) 36, 373
Cac8I GCNNGC 1 cut(s) 672
CfoI GCGC 1 cut(s) 485
Cfr13I GGNCC 2 cut(s) 417, 509
CseI GACGC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 349, 427, 597
CviAII CATG 5 cut(s) 104, 250, 276, 495, 560
CviJI RGCY 8 cut(s) 19, 67, 302, 312, 388, 464, 566, 649
CviKI_1 RGCY 8 cut(s) 19, 67, 302, 312, 388, 464, 566, 649
CviQI GTAC 3 cut(s) 349, 427, 597
DdeI CTNAG 3 cut(s) 87, 459, 465
DpnI GATC 2 cut(s) 115, 134
DpnII GATC 2 cut(s) 113, 132
EaeI YGGCCR 1 cut(s) 647
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 732
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 417, 509
Eco88I CYCGRG 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 520, 606
FaeI CATG 5 cut(s) 107, 253, 279, 498, 563
FaiI YATR 9 cut(s) 74, 105, 251, 277, 496, 561, 585, 614, 693
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 430
FatI CATG 5 cut(s) 103, 249, 275, 494, 559
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 3 cut(s) 663, 671, 713
GlaI GCGC 1 cut(s) 484
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 1 cut(s) 649
HapII CCGG 2 cut(s) 219, 452
HgaI GACGC 1 cut(s) 251
HhaI GCGC 1 cut(s) 485
Hin1II CATG 5 cut(s) 107, 253, 279, 498, 563
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 577
HpaII CCGG 2 cut(s) 219, 452
HphI GGTGA 2 cut(s) 108, 346
Hpy166II GTNNAC 3 cut(s) 93, 241, 427
Hpy188III TCNNGA 5 cut(s) 28, 111, 130, 136, 191
Hpy8I GTNNAC 3 cut(s) 93, 241, 427
HpyAV CCTTC 2 cut(s) 151, 302
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 4 cut(s) 45, 57, 330, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 3 cut(s) 87, 459, 465
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 5 cut(s) 107, 253, 279, 498, 563
HspAI GCGC 1 cut(s) 483
Kzo9I GATC 2 cut(s) 113, 132
LmnI GCTCC 3 cut(s) 299, 491, 563
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 135
MaeI CTAG 3 cut(s) 663, 671, 713
MaeII ACGT 1 cut(s) 209
MalI GATC 2 cut(s) 115, 134
MboI GATC 2 cut(s) 113, 132
MboII GAAGA 2 cut(s) 28, 548
MluCI AATT 5 cut(s) 257, 550, 641, 683, 731
MmeI TCCRAC 1 cut(s) 376
MroXI GAANNNNTTC 2 cut(s) 312, 642
MseI TTAA 3 cut(s) 14, 531, 742
MslI CAYNNNNRTG 1 cut(s) 102
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 2 cut(s) 219, 452
MspR9I CCNGG 4 cut(s) 219, 452, 522, 608
MvaI CCWGG 2 cut(s) 522, 608
MwoI GCNNNNNNNGC 1 cut(s) 491
NciI CCSGG 2 cut(s) 219, 452
NdeII GATC 2 cut(s) 113, 132
NheI GCTAGC 1 cut(s) 670
NlaIII CATG 5 cut(s) 107, 253, 279, 498, 563
NlaIV GGNNCC 2 cut(s) 418, 511
PaeR7I CTCGAG 1 cut(s) 197
PaqCI CACCTGC 2 cut(s) 36, 373
PdmI GAANNNNTTC 2 cut(s) 312, 642
PfeI GAWTC 1 cut(s) 577
PfoI TCCNGGA 1 cut(s) 217
PkrI GCNGC 1 cut(s) 247
PsiI TTATAA 1 cut(s) 74
Psp1406I AACGTT 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 520, 606
PspGI CCWGG 2 cut(s) 520, 606
PspN4I GGNNCC 2 cut(s) 418, 511
PspPI GGNCC 2 cut(s) 417, 509
PspXI VCTCGAGB 1 cut(s) 197
PstI CTGCAG 1 cut(s) 47
RsaI GTAC 3 cut(s) 350, 428, 598
RsaNI GTAC 3 cut(s) 349, 427, 597
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 3 cut(s) 14, 531, 742
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 113, 132
Sau96I GGNCC 2 cut(s) 417, 509
ScrFI CCNGG 4 cut(s) 219, 452, 522, 608
SetI ASST 9 cut(s) 50, 143, 212, 304, 367, 435, 568, 612, 664
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 197
SinI GGWCC 2 cut(s) 417, 509
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 2 cut(s) 13, 197
SmoI CTYRAG 2 cut(s) 13, 197
Sse9I AATT 5 cut(s) 257, 550, 641, 683, 731
SsiI CCGC 2 cut(s) 233, 717
SspI AATATT 1 cut(s) 226
SspMI CTAG 3 cut(s) 663, 671, 713
StyD4I CCNGG 4 cut(s) 217, 450, 520, 606
TaiI ACGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 135, 198, 624
TasI AATT 5 cut(s) 257, 550, 641, 683, 731
TatI WGTACW 3 cut(s) 348, 426, 596
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 3 cut(s) 14, 531, 742
Tru9I TTAA 3 cut(s) 14, 531, 742
TscAI CASTG 1 cut(s) 463
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 4 cut(s) 321, 548, 560, 696
TspRI CASTG 1 cut(s) 463
Vha464I CTTAAG 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 417, 509
XapI RAATTY 3 cut(s) 257, 683, 731
XhoI CTCGAG 1 cut(s) 197
XmnI GAANNNNTTC 2 cut(s) 312, 642
XspI CTAG 3 cut(s) 663, 671, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.