FvH4_4g16640

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000298
Physical Location & Seq
Forward (+)
20506293 .. 20509309
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16640.t2

Sequence Viewer

Length: 1176 bp
ATGGGACGAAGGAAAAGAGTAGCAGAAGATTTACCCATCAACAGAGAAGAACAAGAAGAATGGCAACCCACAGGACCCTGCAGATTCCAACAGCTTCCACAGGCCTTAGTCATCGACATTCTCTCAAGGCTCTTGGTCAAGCCCCTCCTCAACTGCAGGTGCGTATGCAAATCCTGGCTTTCCATTATTTCCGACCCTCAATTTTCCTTTGTGCACCTTCCTAAATCACCCATTGGGATACTGATCAATACCAACCCTGAAAAGAGGACATCAAGGATAATTGATTATACCCAAATTGAAGAATCTGCTGATTCTCAATTCCACCTTGAGAAAATGAGATTTAGTACCAAGAATAGCTTACCACCCCTTTCTTGTTTTGAGTTGATCAACTCATGCAATGGTTTGCTTCTTTTGGCTGAGGTTGGTCCCAATATAGATGGCCCCTTCCCCTTGTATGTGTGCAATCCGATATTGGGTGAATTCATCGCTCTTCCGCTTGCTAATGAGGGGAGGCTGTACTGTAGCTTTATCGGACTTGGTTGTAGTGCGGTGACCAAGGAATACAAGGTGCTGCAAACATGCGGAGACTACCGCAAGGATGAGGATGGGGCTCGGATATACACAATTGGTACAGGAGTTTGGAAAAGCATTGGGAAAACTCCTCAGGACTTTGCTCAGTTTGCACCATTCAATGCTGTTCTGCATGGAGCTCTTCATTGGCTTGCCTCCAGTGGAAGAACATTGGAGTTGATAAATGCATTTCACTTTGAAACAGAAGAGTTCCGCACACTACCCCCACCTGGTTCCTTTACACCATTTCAGAAGCAATTTAAAGACTGTCTGAAATTGGGAGTGTTTGATGGTTGTCTGTTTATATGTGTGTATGGTTATGATTCAAGTAAGTTTGACATGAAATTGGGAGTGTTTGATGGTTGTCTGTTTATATGTGTGTATGGTTATGATTCAAGTAAGTTTGACATGTGGGTTATGAAGGAGTATGGTGTCCAAGAGTCTTGGAGAAAAACTCTGGTCGTTGAAGGCTTGTATCCAAGGCAACTTGACAATGATGTTTATGAGCCACTGGTGTTTTTGCGAAATGGGGAAATCCTGTTGTCCTACATTGACTGGACTGTGGTTTGTTATAACCAGGAAAAAAACGCGTCTGAGGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

392

Amino Acids

44.44

Weight (kDa)

5.45

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 29 - 67 6.7e-08 F-box-like
F-box PF00646 30 - 68 1.1e-07 F-box domain
FBA_3 PF08268 105 - 267 1.2e-14 F-box associated beta propeller domain
FBA_1 PF07734 122 - 288 2.2e-16 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 129 - 269 9.6e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1143
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AccII CGCG 1 cut(s) 1160
AciI CCGC 5 cut(s) 494, 548, 582, 592, 784
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 3 cut(s) 346, 518, 631
AfiI CCNNNNNNNGG 2 cut(s) 473, 800
AflIII ACRYGT 2 cut(s) 978, 1158
AgsI TTSAA 6 cut(s) 299, 691, 770, 897, 966, 1037
AjnI CCWGG 3 cut(s) 173, 799, 1146
AluBI AGCT 4 cut(s) 94, 357, 525, 710
AluI AGCT 4 cut(s) 94, 357, 525, 710
Alw21I GWGCWC 2 cut(s) 216, 712
Alw26I GTCTC 1 cut(s) 579
Alw44I GTGCAC 1 cut(s) 212
AoxI GGCC 2 cut(s) 102, 439
ApaLI GTGCAC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 571
ApoI RAATTY 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 74, 425, 440
AsuHPI GGTGA 3 cut(s) 219, 488, 562
AvaII GGWCC 2 cut(s) 74, 425
AxyI CCTNAGG 1 cut(s) 663
BaeGI GKGCMC 1 cut(s) 216
BaeI ACNNNNGTAYC 2 cut(s) 621, 654
BanII GRGCYC 2 cut(s) 613, 712
Bbv12I GWGCWC 2 cut(s) 216, 712
BbvCI CCTCAGC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 558
BccI CCATC 5 cut(s) 44, 431, 599, 854, 923
BciT130I CCWGG 3 cut(s) 175, 801, 1148
BciVI GTATCC 2 cut(s) 231, 1056
BclI TGATCA 2 cut(s) 243, 384
BcoDI GTCTC 1 cut(s) 579
BfaI CTAG 1 cut(s) 1174
BfmI CTRYAG 3 cut(s) 79, 154, 520
BfuAI ACCTGC 1 cut(s) 147
BfuI GTATCC 2 cut(s) 231, 1056
BisI GCNGC 1 cut(s) 572
BlsI GCNGC 1 cut(s) 573
Bme1390I CCNGG 3 cut(s) 175, 801, 1148
Bme18I GGWCC 2 cut(s) 74, 425
BmgT120I GGNCC 3 cut(s) 74, 425, 440
BmiI GGNNCC 4 cut(s) 76, 427, 442, 805
BmrFI CCNGG 3 cut(s) 175, 801, 1148
BplI GAGNNNNNCTC 2 cut(s) 1009, 1041
BpmI CTGGAG 1 cut(s) 712
Bpu10I CCTNAGC 1 cut(s) 417
BpuEI CTTGAG 2 cut(s) 109, 347
BsaBI GATNNNNATC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 555, 1049
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 800
Bse1I ACTGG 3 cut(s) 729, 1086, 1130
Bse21I CCTNAGG 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 403
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 3 cut(s) 175, 801, 1148
BseDI CCNNGG 2 cut(s) 555, 1049
BseGI GGATG 2 cut(s) 604, 610
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 473, 800
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 4 cut(s) 408, 677, 689, 1155
BseNI ACTGG 3 cut(s) 729, 1086, 1130
BseRI GAGGAG 2 cut(s) 137, 651
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 1160
BshFI GGCC 2 cut(s) 104, 441
BsiHKAI GWGCWC 2 cut(s) 216, 712
BslFI GGGAC 2 cut(s) 18, 411
BslI CCNNNNNNNGG 2 cut(s) 473, 800
BsmAI GTCTC 1 cut(s) 579
BsmFI GGGAC 2 cut(s) 18, 411
BsnI GGCC 2 cut(s) 104, 441
Bsp1286I GDGCHC 3 cut(s) 216, 613, 712
Bsp143I GATC 2 cut(s) 243, 384
BspACI CCGC 5 cut(s) 494, 548, 582, 592, 784
BspANI GGCC 2 cut(s) 104, 441
BspCNI CTCAG 4 cut(s) 409, 676, 688, 1156
BspFNI CGCG 1 cut(s) 1160
BspLI GGNNCC 4 cut(s) 76, 427, 442, 805
BspMAI CTGCAG 2 cut(s) 83, 158
BspMI ACCTGC 1 cut(s) 147
BspQI GCTCTTC 2 cut(s) 495, 717
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 3 cut(s) 729, 1086, 1130
BssECI CCNNGG 2 cut(s) 555, 1049
BssMI GATC 2 cut(s) 243, 384
BssT1I CCWWGG 2 cut(s) 555, 1049
Bst2UI CCWGG 3 cut(s) 175, 801, 1148
Bst4CI ACNGT 3 cut(s) 521, 839, 1132
Bst6I CTCTTC 3 cut(s) 495, 717, 771
BstC8I GCNNGC 2 cut(s) 498, 723
BstDEI CTNAG 5 cut(s) 106, 417, 663, 675, 1164
BstEII GGTNACC 1 cut(s) 550
BstF5I GGATG 2 cut(s) 604, 610
BstFNI CGCG 1 cut(s) 1160
BstKTI GATC 2 cut(s) 246, 387
BstMAI GTCTC 1 cut(s) 579
BstMBI GATC 2 cut(s) 243, 384
BstMWI GCNNNNNNNGC 1 cut(s) 680
BstNI CCWGG 3 cut(s) 175, 801, 1148
BstNSI RCATGY 2 cut(s) 582, 982
BstPI GGTNACC 1 cut(s) 550
BstSCI CCNGG 3 cut(s) 173, 799, 1146
BstSFI CTRYAG 3 cut(s) 79, 154, 520
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 1160
BstV1I GCAGC 1 cut(s) 558
Bsu36I CCTNAGG 1 cut(s) 663
BsuI GTATCC 2 cut(s) 231, 1056
BsuRI GGCC 2 cut(s) 104, 441
BtgZI GCGATG 1 cut(s) 469
BtsCI GGATG 2 cut(s) 604, 610
BtsIMutI CAGTG 2 cut(s) 736, 1079
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 498, 723
Cfr13I GGNCC 3 cut(s) 74, 425, 440
CseI GACGC 1 cut(s) 1149
CsiI ACCWGGT 1 cut(s) 799
Csp6I GTAC 3 cut(s) 345, 517, 630
CviAII CATG 5 cut(s) 393, 579, 704, 910, 979
CviQI GTAC 3 cut(s) 345, 517, 630
DdeI CTNAG 5 cut(s) 106, 417, 663, 675, 1164
DpnI GATC 2 cut(s) 245, 386
DpnII GATC 2 cut(s) 243, 384
DraI TTTAAA 1 cut(s) 832
Eam1104I CTCTTC 3 cut(s) 495, 717, 771
EarI CTCTTC 3 cut(s) 495, 717, 771
Ecl136II GAGCTC 1 cut(s) 710
Eco130I CCWWGG 2 cut(s) 555, 1049
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 2 cut(s) 613, 712
Eco47I GGWCC 2 cut(s) 74, 425
Eco53kI GAGCTC 1 cut(s) 710
Eco81I CCTNAGG 1 cut(s) 663
Eco91I GGTNACC 1 cut(s) 550
EcoICRI GAGCTC 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 550
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 3 cut(s) 173, 799, 1146
EcoT14I CCWWGG 2 cut(s) 555, 1049
EcoT22I ATGCAT 1 cut(s) 760
EcoT38I GRGCYC 2 cut(s) 613, 712
ErhI CCWWGG 2 cut(s) 555, 1049
FaeI CATG 5 cut(s) 396, 582, 707, 913, 982
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 2 cut(s) 18, 411
FatI CATG 5 cut(s) 392, 578, 703, 909, 978
FbaI TGATCA 2 cut(s) 243, 384
Fnu4HI GCNGC 1 cut(s) 572
FokI GGATG 2 cut(s) 611, 617
FriOI GRGCYC 2 cut(s) 613, 712
Fsp4HI GCNGC 1 cut(s) 572
FspBI CTAG 1 cut(s) 1174
GluI GCNGC 1 cut(s) 572
GsuI CTGGAG 1 cut(s) 712
HaeIII GGCC 2 cut(s) 104, 441
HgaI GACGC 1 cut(s) 1149
Hin1II CATG 5 cut(s) 396, 582, 707, 913, 982
HinfI GANTC 6 cut(s) 84, 302, 311, 893, 962, 1010
HphI GGTGA 3 cut(s) 219, 488, 562
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 7 cut(s) 193, 468, 533, 615, 822, 843, 1165
Hpy188III TCNNGA 1 cut(s) 665
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 5 cut(s) 3, 227, 454, 985, 1031
HpyCH4III ACNGT 3 cut(s) 521, 839, 1132
HpyF10VI GCNNNNNNNGC 1 cut(s) 680
HpyF3I CTNAG 5 cut(s) 106, 417, 663, 675, 1164
Hsp92II CATG 5 cut(s) 396, 582, 707, 913, 982
Ksp22I TGATCA 2 cut(s) 243, 384
Kzo9I GATC 2 cut(s) 243, 384
LguI GCTCTTC 2 cut(s) 495, 717
LmnI GCTCC 1 cut(s) 707
Lsp1109I GCAGC 1 cut(s) 558
MabI ACCWGGT 1 cut(s) 799
MaeI CTAG 1 cut(s) 1174
MaeIII GTNAC 1 cut(s) 550
MalI GATC 2 cut(s) 245, 386
MboI GATC 2 cut(s) 243, 384
MboII GAAGA 8 cut(s) 38, 59, 68, 311, 482, 704, 747, 788
MfeI CAATTG 1 cut(s) 624
MhlI GDGCHC 3 cut(s) 216, 613, 712
MluCI AATT 9 cut(s) 200, 279, 294, 317, 479, 624, 827, 845, 914
MluI ACGCGT 1 cut(s) 1158
MlyI GAGTC 1 cut(s) 1019
MmeI TCCRAC 2 cut(s) 112, 216
Mph1103I ATGCAT 1 cut(s) 760
MseI TTAA 1 cut(s) 831
MspR9I CCNGG 3 cut(s) 175, 801, 1148
MunI CAATTG 1 cut(s) 624
MvaI CCWGG 3 cut(s) 175, 801, 1148
MvnI CGCG 1 cut(s) 1160
MwoI GCNNNNNNNGC 1 cut(s) 680
NdeII GATC 2 cut(s) 243, 384
NlaIII CATG 5 cut(s) 396, 582, 707, 913, 982
NlaIV GGNNCC 4 cut(s) 76, 427, 442, 805
NmuCI GTSAC 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 760
NspI RCATGY 2 cut(s) 582, 982
PaqCI CACCTGC 1 cut(s) 147
PceI AGGCCT 1 cut(s) 104
PciI ACATGT 1 cut(s) 978
PciSI GCTCTTC 2 cut(s) 495, 717
PfeI GAWTC 5 cut(s) 84, 302, 311, 893, 962
PkrI GCNGC 1 cut(s) 573
PleI GAGTC 1 cut(s) 1018
PpsI GAGTC 1 cut(s) 1018
PpuMI RGGWCCY 1 cut(s) 74
PscI ACATGT 1 cut(s) 978
PsiI TTATAA 1 cut(s) 1143
Psp124BI GAGCTC 1 cut(s) 712
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 3 cut(s) 173, 799, 1146
PspEI GGTNACC 1 cut(s) 550
PspGI CCWGG 3 cut(s) 173, 799, 1146
PspN4I GGNNCC 4 cut(s) 76, 427, 442, 805
PspPI GGNCC 3 cut(s) 74, 425, 440
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 2 cut(s) 83, 158
RsaI GTAC 3 cut(s) 346, 518, 631
RsaNI GTAC 3 cut(s) 345, 517, 630
SacI GAGCTC 1 cut(s) 712
SapI GCTCTTC 2 cut(s) 495, 717
SaqAI TTAA 1 cut(s) 831
SatI GCNGC 1 cut(s) 572
Sau3AI GATC 2 cut(s) 243, 384
Sau96I GGNCC 3 cut(s) 74, 425, 440
SchI GAGTC 1 cut(s) 1019
ScrFI CCNGG 3 cut(s) 175, 801, 1148
SduI GDGCHC 3 cut(s) 216, 613, 712
SexAI ACCWGGT 1 cut(s) 799
SfcI CTRYAG 3 cut(s) 79, 154, 520
SinI GGWCC 2 cut(s) 74, 425
SmlI CTYRAG 2 cut(s) 124, 326
SmoI CTYRAG 2 cut(s) 124, 326
Sse9I AATT 9 cut(s) 200, 279, 294, 317, 479, 624, 827, 845, 914
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 5 cut(s) 494, 548, 582, 592, 784
SspMI CTAG 1 cut(s) 1174
SstI GAGCTC 1 cut(s) 712
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 3 cut(s) 173, 799, 1146
StyI CCWWGG 2 cut(s) 555, 1049
TaaI ACNGT 3 cut(s) 521, 839, 1132
TaqI TCGA 1 cut(s) 114
TasI AATT 9 cut(s) 200, 279, 294, 317, 479, 624, 827, 845, 914
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 5 cut(s) 84, 302, 311, 893, 962
Tru1I TTAA 1 cut(s) 831
Tru9I TTAA 1 cut(s) 831
TscAI CASTG 2 cut(s) 736, 1086
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 1 cut(s) 571
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 4 cut(s) 472, 704, 926, 1004
TspRI CASTG 2 cut(s) 736, 1086
VneI GTGCAC 1 cut(s) 212
VpaK11BI GGWCC 2 cut(s) 74, 425
XapI RAATTY 1 cut(s) 479
XceI RCATGY 2 cut(s) 582, 982
XspI CTAG 1 cut(s) 1174
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.