Rh4BG225300

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000298
Physical Location & Seq
Forward (+)
38929424 .. 38929903
480 bp
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UTR
Exon/CDS
Intron
Rh4BG225300.1

Sequence Viewer

Length: 339 bp
ATGCGCCTTTCGAAGTTGCCCATTGGGATACTGATCAAGACGAGACCCGAAATGCAATGTGTCGCAACCAAGGAATACAAGGTGCTGCAAACATGCAGCGGCGACGACCGCACCGATGAGAATGAGGCTCAGATATACACAATTGGTTCGGGAGTTTGGAAAAGCATTGGGAAAACTCATCAGGACTCTGCCCAGTTAGCACCATTCAATGCTGTTCTGCATGGAGCTCTTCATTGGCTTTCCTTTGGTGGAAGAACATTTGAGTTCATACATGCATTTAACTTTGGAACAGAACAGTTCCGCACACTACCCCCACCTGGTTACTTTGAACCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

112

Amino Acids

12.63

Weight (kDa)

6.9

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 23 - 106 2.3e-10 F-box associated beta propeller domain
FBA_3 PF08268 24 - 104 3.4e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 99, 109, 301
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 208, 329
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 85, 96
AspLEI GCGC 1 cut(s) 6
AsuII TTCGAA 1 cut(s) 11
BanII GRGCYC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 72, 108
BciT130I CCWGG 1 cut(s) 318
BciVI GTATCC 1 cut(s) 21
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 37
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 3 cut(s) 86, 97, 100
BlsI GCNGC 3 cut(s) 87, 98, 101
Bme1390I CCNGG 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 318
BmrI ACTGGG 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 32
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 69
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 2 cut(s) 72, 108
Bsh1285I CGRYCG 1 cut(s) 109
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 37
Bso31I GGTCTC 1 cut(s) 37
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 3 cut(s) 99, 109, 301
BspCNI CTCAG 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 234
BspT104I TTCGAA 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 62
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 33
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 108, 197
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 2 cut(s) 96, 275
BstSCI CCNGG 1 cut(s) 316
BstV1I GCAGC 2 cut(s) 72, 108
BsuI GTATCC 1 cut(s) 21
CfoI GCGC 1 cut(s) 6
CsiI ACCWGGT 1 cut(s) 316
CviAII CATG 3 cut(s) 93, 221, 272
CviJI RGCY 3 cut(s) 128, 227, 238
CviKI_1 RGCY 3 cut(s) 128, 227, 238
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 277
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 3 cut(s) 96, 224, 275
FaiI YATR 5 cut(s) 94, 136, 222, 269, 273
FatI CATG 3 cut(s) 92, 220, 271
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 86, 97, 100
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 3 cut(s) 86, 97, 100
GlaI GCGC 1 cut(s) 5
GluI GCNGC 3 cut(s) 86, 97, 100
HhaI GCGC 1 cut(s) 6
Hin1II CATG 3 cut(s) 96, 224, 275
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 3 cut(s) 37, 150, 182
Hpy99I CGWCG 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 5 cut(s) 55, 88, 96, 220, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 197
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 3 cut(s) 96, 224, 275
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 1 cut(s) 33
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 4 cut(s) 167, 206, 303, 330
Lsp1109I GCAGC 2 cut(s) 72, 108
MabI ACCWGGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 320
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 2 cut(s) 221, 264
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 1 cut(s) 141
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 1 cut(s) 118
Mph1103I ATGCAT 1 cut(s) 277
MseI TTAA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 108, 197
NdeII GATC 1 cut(s) 33
NlaIII CATG 3 cut(s) 96, 224, 275
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 2 cut(s) 96, 275
NspV TTCGAA 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PkrI GCNGC 3 cut(s) 87, 98, 101
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
SacI GAGCTC 1 cut(s) 229
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 3 cut(s) 86, 97, 100
Sau3AI GATC 1 cut(s) 33
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 229
SetI ASST 3 cut(s) 84, 229, 319
SexAI ACCWGGT 1 cut(s) 316
SfuI TTCGAA 1 cut(s) 11
Sse9I AATT 1 cut(s) 141
SsiI CCGC 3 cut(s) 99, 109, 301
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 141
TauI GCSGC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseI GCWGC 2 cut(s) 85, 96
TspDTI ATGAA 2 cut(s) 221, 256
XceI RCATGY 2 cut(s) 96, 275
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.