Rmu_sc0023895.1_g000004

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023895.1
OG0000298
Physical Location & Seq
Reverse (-)
13710 .. 15678
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023895.1_g000004.1.cds

Sequence Viewer

Length: 1047 bp
atgagacgaaggaaaagagtagcgaacatttcacctatcaacacggaagaacaagaagaatggcaacccaaaggtccctgcagattccaacagtttccacaggctttagtcatagacattctcttaaggctcttggtcaagaccctcttcaactgcaggtgcatatgcaaatcttggcattccattatttccgaccctcatttttcccacatgcgcctttcgaagttgcccattgggatactgatcaagacgagacccgaaatgcaatgtgtcgcaaccaaggaatacaaggtgctgcaaacatgcagcggcgacgtccgcaccgatgagaatgaggctcagatatacacaattggttcgggagtttggaaaagcattgggaaaactcatcaggactctgcccagttagcaccattcaatgctgttctgcatggagctcttcattggctttcctttggtggaagaacatttgagttcatacatgcatttaactttggaacagaacagttccgcacactacccccacctggttactttgaaccatttgagaagctatttaaagaatgtctgaaattgggagtgttagatggttatctgtttttatctgtgtgtggtgatgatcctagaaaatttgacatgtggattatgaaggattattgtgtccaagagtcttgcacgaaaactctggttgttgaaggcttgtatctaccaacggaacttgccaatgatgtttatgaaccactggtgtttttgagaaatggggacattctgttgtgctacaatgactggattgtggtttgttataaccaaggaacaaagagtctcagggaaactagagttgctcggactcggtcacattttcgtgcaattggttacaacccatgctttttctctctccatgatgttgcaaaaggagaggaggtgaaaagggtaagagacaaaaagaactccaagaagccctttggtgaagggagtagtggttgtgccgattctggcatcccccagaagtccaaaaaacttaactcaggctctggattgcctgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

348

Amino Acids

39.66

Weight (kDa)

8.91

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 804
AarI CACCTGC 1 cut(s) 147
AatII GACGTC 1 cut(s) 318
Acc36I ACCTGC 1 cut(s) 147
AciI CCGC 3 cut(s) 309, 319, 511
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 1 cut(s) 629
AcyI GRCGYC 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 527
AflII CTTAAG 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 4 cut(s) 151, 418, 539, 695
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 2 cut(s) 437, 553
AluI AGCT 2 cut(s) 437, 553
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 3 cut(s) 247, 827, 930
AlwI GGATC 1 cut(s) 614
AlwNI CAGNNNCTG 1 cut(s) 1031
ApeKI GCWGC 2 cut(s) 295, 306
ApoI RAATTY 1 cut(s) 629
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 4 cut(s) 24, 626, 934, 977
AsuII TTCGAA 1 cut(s) 221
AvaII GGWCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 439
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 282, 318
BccI CCATC 1 cut(s) 581
BciT130I CCWGG 1 cut(s) 528
BciVI GTATCC 1 cut(s) 231
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 3 cut(s) 247, 827, 930
BfaI CTAG 2 cut(s) 624, 834
BfmI CTRYAG 2 cut(s) 79, 154
BfrI CTTAAG 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 147
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 3 cut(s) 296, 307, 310
BlsI GCNGC 3 cut(s) 297, 308, 311
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 528
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 1 cut(s) 1005
BmuI ACTGGG 1 cut(s) 397
Bpu14I TTCGAA 1 cut(s) 221
BsaBI GATNNNNATC 2 cut(s) 242, 591
BsaHI GRCGYC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 279, 808
BsaXI ACNNNNNCTCC 4 cut(s) 906, 936, 964, 994
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 3 cut(s) 403, 747, 791
Bse3DI GCAATG 1 cut(s) 272
Bse8I GATNNNNATC 2 cut(s) 242, 591
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 2 cut(s) 279, 808
BseGI GGATG 1 cut(s) 996
BseJI GATNNNNATC 2 cut(s) 242, 591
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMI GCAATG 1 cut(s) 272
BseMII CTCAG 3 cut(s) 353, 838, 1038
BseNI ACTGG 3 cut(s) 403, 747, 791
BseRI GAGGAG 1 cut(s) 932
BseXI GCAGC 2 cut(s) 282, 318
BsiHKAI GWGCWC 1 cut(s) 439
BslFI GGGAC 2 cut(s) 60, 776
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 3 cut(s) 247, 827, 930
BsmFI GGGAC 2 cut(s) 60, 776
BsmI GAATGC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 247
Bsp119I TTCGAA 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 2 cut(s) 243, 619
BspACI CCGC 3 cut(s) 309, 319, 511
BspCNI CTCAG 3 cut(s) 352, 837, 1037
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 2 cut(s) 83, 158
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 1 cut(s) 614
BspQI GCTCTTC 1 cut(s) 444
BspT104I TTCGAA 1 cut(s) 221
BspTI CTTAAG 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 272
BsrI ACTGG 3 cut(s) 403, 747, 791
BssECI CCNNGG 2 cut(s) 279, 808
BssMI GATC 2 cut(s) 243, 619
BssNI GRCGYC 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 279, 808
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 93, 507
Bst6I CTCTTC 2 cut(s) 152, 444
BstACI GRCGYC 1 cut(s) 315
BstAFI CTTAAG 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 1041
BstDEI CTNAG 3 cut(s) 339, 824, 1024
BstF5I GGATG 1 cut(s) 996
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 2 cut(s) 246, 622
BstMAI GTCTC 3 cut(s) 247, 827, 930
BstMBI GATC 2 cut(s) 243, 619
BstMWI GCNNNNNNNGC 2 cut(s) 318, 407
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 4 cut(s) 214, 306, 485, 640
BstSCI CCNGG 1 cut(s) 526
BstSFI CTRYAG 2 cut(s) 79, 154
BstV1I GCAGC 2 cut(s) 282, 318
BsuI GTATCC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 996
BtsIMutI CAGTG 1 cut(s) 740
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 1041
CaiI CAGNNNCTG 1 cut(s) 1031
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 526
CviAII CATG 7 cut(s) 211, 303, 431, 482, 637, 882, 899
CviJI RGCY 9 cut(s) 104, 130, 338, 437, 448, 553, 699, 958, 1029
CviKI_1 RGCY 9 cut(s) 104, 130, 338, 437, 448, 553, 699, 958, 1029
DdeI CTNAG 3 cut(s) 339, 824, 1024
DpnI GATC 2 cut(s) 245, 621
DpnII GATC 2 cut(s) 243, 619
DraI TTTAAA 1 cut(s) 559
Eam1104I CTCTTC 2 cut(s) 152, 444
EarI CTCTTC 2 cut(s) 152, 444
Ecl136II GAGCTC 1 cut(s) 437
Eco130I CCWWGG 2 cut(s) 279, 808
Eco24I GRGCYC 1 cut(s) 439
Eco31I GGTCTC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 74
Eco53kI GAGCTC 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 279, 808
EcoT22I ATGCAT 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 439
ErhI CCWWGG 2 cut(s) 279, 808
FaeI CATG 7 cut(s) 214, 306, 434, 485, 640, 885, 902
FalI AAGNNNNNCTT 4 cut(s) 131, 163, 944, 976
FaqI GGGAC 2 cut(s) 60, 776
FatI CATG 7 cut(s) 210, 302, 430, 481, 636, 881, 898
FauNDI CATATG 1 cut(s) 164
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 296, 307, 310
FokI GGATG 1 cut(s) 983
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 3 cut(s) 296, 307, 310
FspBI CTAG 2 cut(s) 624, 834
GlaI GCGC 1 cut(s) 215
GluI GCNGC 3 cut(s) 296, 307, 310
HhaI GCGC 1 cut(s) 216
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 7 cut(s) 214, 306, 434, 485, 640, 885, 902
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HinfI GANTC 6 cut(s) 84, 395, 668, 820, 847, 989
HphI GGTGA 4 cut(s) 24, 626, 934, 977
Hpy188I TCNGA 4 cut(s) 193, 342, 570, 846
Hpy188III TCNNGA 5 cut(s) 139, 247, 360, 392, 1032
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 4 cut(s) 3, 643, 689, 962
HpyCH4III ACNGT 2 cut(s) 93, 507
HpyCH4IV ACGT 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 318, 407
HpyF3I CTNAG 3 cut(s) 339, 824, 1024
HpySE526I ACGT 1 cut(s) 315
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 7 cut(s) 214, 306, 434, 485, 640, 885, 902
HspAI GCGC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 2 cut(s) 243, 619
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 2 cut(s) 282, 318
LweI GCATC 1 cut(s) 1005
MabI ACCWGGT 1 cut(s) 526
MaeI CTAG 2 cut(s) 624, 834
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 3 cut(s) 530, 852, 872
MalI GATC 2 cut(s) 245, 621
MboI GATC 2 cut(s) 243, 619
MboII GAAGA 5 cut(s) 59, 68, 139, 431, 474
MfeI CAATTG 2 cut(s) 351, 867
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 4 cut(s) 351, 572, 629, 867
MlyI GAGTC 4 cut(s) 389, 677, 829, 841
MmeI TCCRAC 2 cut(s) 112, 216
MnlI CCTC 5 cut(s) 155, 207, 328, 910, 913
Mph1103I ATGCAT 1 cut(s) 487
MseI TTAA 5 cut(s) 125, 489, 558, 1020, 1045
MslI CAYNNNNRTG 1 cut(s) 861
MspA1I CMGCKG 1 cut(s) 309
MspCI CTTAAG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 528
MunI CAATTG 2 cut(s) 351, 867
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 2 cut(s) 318, 407
NdeI CATATG 1 cut(s) 164
NdeII GATC 2 cut(s) 243, 619
NlaIII CATG 7 cut(s) 214, 306, 434, 485, 640, 885, 902
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 852
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 4 cut(s) 214, 306, 485, 640
NspV TTCGAA 1 cut(s) 221
PaqCI CACCTGC 1 cut(s) 147
PciI ACATGT 1 cut(s) 636
PciSI GCTCTTC 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 84, 989
PflFI GACNNNGTC 1 cut(s) 850
PkrI GCNGC 3 cut(s) 297, 308, 311
PleI GAGTC 4 cut(s) 389, 676, 828, 841
PpsI GAGTC 4 cut(s) 389, 676, 828, 841
PpuMI RGGWCCY 1 cut(s) 74
PscI ACATGT 1 cut(s) 636
PsiI TTATAA 1 cut(s) 804
Psp124BI GAGCTC 1 cut(s) 439
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 2 cut(s) 83, 158
PstNI CAGNNNCTG 1 cut(s) 1031
PsyI GACNNNGTC 1 cut(s) 850
RseI CAYNNNNRTG 1 cut(s) 861
SacI GAGCTC 1 cut(s) 439
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 5 cut(s) 125, 489, 558, 1020, 1045
SatI GCNGC 3 cut(s) 296, 307, 310
Sau3AI GATC 2 cut(s) 243, 619
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 4 cut(s) 389, 677, 829, 841
ScrFI CCNGG 1 cut(s) 528
SduI GDGCHC 1 cut(s) 439
SetI ASST 9 cut(s) 37, 76, 161, 294, 318, 439, 529, 555, 924
SexAI ACCWGGT 1 cut(s) 526
SfaNI GCATC 1 cut(s) 1005
SfcI CTRYAG 2 cut(s) 79, 154
SfuI TTCGAA 1 cut(s) 221
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 861
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 4 cut(s) 351, 572, 629, 867
SsiI CCGC 3 cut(s) 309, 319, 511
SspMI CTAG 2 cut(s) 624, 834
SstI GAGCTC 1 cut(s) 439
StyD4I CCNGG 1 cut(s) 526
StyI CCWWGG 2 cut(s) 279, 808
TaaI ACNGT 2 cut(s) 93, 507
TaiI ACGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 221
TaqII GACCGA 1 cut(s) 840
TasI AATT 4 cut(s) 351, 572, 629, 867
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 2 cut(s) 84, 989
Tru1I TTAA 5 cut(s) 125, 489, 558, 1020, 1045
Tru9I TTAA 5 cut(s) 125, 489, 558, 1020, 1045
TscAI CASTG 1 cut(s) 747
TseFI GTSAC 1 cut(s) 852
TseI GCWGC 2 cut(s) 295, 306
Tsp45I GTSAC 1 cut(s) 852
TspDTI ATGAA 4 cut(s) 431, 466, 662, 750
TspGWI ACGGA 2 cut(s) 59, 728
TspRI CASTG 1 cut(s) 747
Tth111I GACNNNGTC 1 cut(s) 850
Vha464I CTTAAG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 74
XapI RAATTY 1 cut(s) 629
XceI RCATGY 4 cut(s) 214, 306, 485, 640
XspI CTAG 2 cut(s) 624, 834
ZraI GACGTC 1 cut(s) 316
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.