RchiOBHm_Chr6g0306731

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000298
Physical Location & Seq
Forward (+)
65319669 .. 65320478
810 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27575

Sequence Viewer

Length: 810 bp
ATGGAAAAATTGACCTTCACTACTAAAAACACTGCACCCGTTGATGTATTTACAGTAGTGAACTCCTGCAACGGTTTGGTTTGTTTGTCTGGGTATAAAGAAGAGAGCTCTTTGATTGTGTGTAATCCTCTTTTGCACGAGTACATTAAATTTCCTCTCCCTAGTAATAAGAAATGGGGAGATTTTGCTGCACTTGGTTTTAGTTCAGTGACAAATGAATACAAGTTGTTGCGAATATTTTCTCCGGATTGGCGTAATTATACGAATAACCGTCAGGCTGAAGTTTACACTATCAGCTCAGGAGTTTGGAGGAGCATTGGAAATGCTCCTACTGACAAGGCTATATTACCCTTTAATTCTTTTCTGCATGGAGCTATTCATTTTGCTCCCATCGATTCTAGAGGCTCTTCCTTGATACATTCTTTCGATTTCGAAAGAGAAAAGTTTCAAGCACTGCCGCCACCCTCAAGTGATCAAGCACTGCCGCCACCCTCAAGTGATCAGTTGAAGTTGAAGTTGAGGTCTAACAGAGGTGGTATAAGTTTGGGAGTGTGGGAGAGTCGTCTCTCATATTGTGTGTTTGATGTACATGCTACCAAATTTGACTTGTGGATTATGAAGGAGTATGGGGTGCAGGAGTCTTGGATAAAAGCTCTTGTCGTTGAAAACATGTTTCCAACTGAGCGCTCAATAACTGAATTTTACGAACCGGTTATGTACTTGAGGGGTGGGGAAATTTTAACGGCCTATAATGATCGGATTATAGTTTCTTATAATCCGAAAACAAAAACTTTCAAAAAACAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

269

Amino Acids

30.63

Weight (kDa)

8.75

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 10 - 229 1.3e-23 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 12 - 150 1.1e-07 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 15 - 267 2.5e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 2 cut(s) 458, 485
AcsI RAATTY 4 cut(s) 149, 599, 698, 735
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 3 cut(s) 143, 588, 719
AfeI AGCGCT 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 669
AgeI ACCGGT 1 cut(s) 709
AgsI TTSAA 5 cut(s) 449, 508, 514, 665, 796
AluBI AGCT 4 cut(s) 108, 297, 374, 653
AluI AGCT 4 cut(s) 108, 297, 374, 653
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 569
Aor13HI TCCGGA 1 cut(s) 244
Aor51HI AGCGCT 1 cut(s) 686
AoxI GGCC 1 cut(s) 744
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 4 cut(s) 149, 599, 698, 735
AsiGI ACCGGT 1 cut(s) 709
Asp700I GAANNNNTTC 2 cut(s) 238, 444
AspLEI GCGC 1 cut(s) 687
AsuII TTCGAA 1 cut(s) 432
BanII GRGCYC 1 cut(s) 110
BauI CACGAG 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 759
BclI TGATCA 2 cut(s) 472, 499
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 2 cut(s) 162, 399
BfoI RGCGCY 1 cut(s) 688
BisI GCNGC 3 cut(s) 189, 458, 485
BlsI GCNGC 3 cut(s) 190, 459, 486
Bpu10I CCTNAGC 1 cut(s) 298
Bpu14I TTCGAA 1 cut(s) 432
BpuEI CTTGAG 3 cut(s) 451, 478, 742
Bsa29I ATCGAT 1 cut(s) 393
BsaWI WCCGGW 2 cut(s) 244, 709
Bse118I RCCGGY 1 cut(s) 709
BseAI TCCGGA 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 393
BseMII CTCAG 2 cut(s) 312, 672
BseRI GAGGAG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 3 cut(s) 18, 174, 653
BshFI GGCC 1 cut(s) 746
BshTI ACCGGT 1 cut(s) 709
BshVI ATCGAT 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 2 cut(s) 245, 710
BsmAI GTCTC 1 cut(s) 569
BsmBI CGTCTC 1 cut(s) 569
BsnI GGCC 1 cut(s) 746
Bsp119I TTCGAA 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 3 cut(s) 472, 499, 754
BspACI CCGC 2 cut(s) 458, 485
BspANI GGCC 1 cut(s) 746
BspCNI CTCAG 2 cut(s) 311, 673
BspDI ATCGAT 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 412
BspT104I TTCGAA 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 709
BsrGI TGTACA 1 cut(s) 586
BssAI RCCGGY 1 cut(s) 709
BssMI GATC 3 cut(s) 472, 499, 754
BssSI CACGAG 1 cut(s) 137
Bst2BI CACGAG 1 cut(s) 137
Bst4CI ACNGT 3 cut(s) 55, 74, 272
Bst6I CTCTTC 2 cut(s) 96, 412
BstAUI TGTACA 1 cut(s) 586
BstBI TTCGAA 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 298, 681
BstH2I RGCGCY 1 cut(s) 688
BstHHI GCGC 1 cut(s) 687
BstKTI GATC 3 cut(s) 475, 502, 757
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 3 cut(s) 472, 499, 754
BstNSI RCATGY 2 cut(s) 593, 673
BstV1I GCAGC 1 cut(s) 175
Bsu15I ATCGAT 1 cut(s) 393
BsuRI GGCC 1 cut(s) 746
BsuTUI ATCGAT 1 cut(s) 393
BtsI GCAGTG 3 cut(s) 30, 452, 479
BtsIMutI CAGTG 4 cut(s) 30, 213, 452, 479
CfoI GCGC 1 cut(s) 687
Cfr10I RCCGGY 1 cut(s) 709
ClaI ATCGAT 1 cut(s) 393
Csp6I GTAC 3 cut(s) 142, 587, 718
CspAI ACCGGT 1 cut(s) 709
CviAII CATG 3 cut(s) 368, 590, 670
CviJI RGCY 8 cut(s) 108, 278, 297, 341, 374, 405, 653, 746
CviKI_1 RGCY 8 cut(s) 108, 278, 297, 341, 374, 405, 653, 746
CviQI GTAC 3 cut(s) 142, 587, 718
DdeI CTNAG 2 cut(s) 298, 681
DpnI GATC 3 cut(s) 474, 501, 756
DpnII GATC 3 cut(s) 472, 499, 754
Eam1104I CTCTTC 2 cut(s) 96, 412
EarI CTCTTC 2 cut(s) 96, 412
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco47III AGCGCT 1 cut(s) 686
Eco53kI GAGCTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 569
FaeI CATG 3 cut(s) 371, 593, 673
FatI CATG 3 cut(s) 367, 589, 669
FbaI TGATCA 2 cut(s) 472, 499
Fnu4HI GCNGC 3 cut(s) 189, 458, 485
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 189, 458, 485
FspBI CTAG 2 cut(s) 162, 399
GlaI GCGC 1 cut(s) 686
GluI GCNGC 3 cut(s) 189, 458, 485
HaeII RGCGCY 1 cut(s) 688
HaeIII GGCC 1 cut(s) 746
HapII CCGG 2 cut(s) 245, 710
HhaI GCGC 1 cut(s) 687
Hin1II CATG 3 cut(s) 371, 593, 673
Hin6I GCGC 1 cut(s) 685
HinP1I GCGC 1 cut(s) 685
HinfI GANTC 3 cut(s) 395, 559, 638
HpaII CCGG 2 cut(s) 245, 710
Hpy166II GTNNAC 2 cut(s) 61, 286
Hpy188I TCNGA 2 cut(s) 759, 780
Hpy188III TCNNGA 3 cut(s) 245, 300, 399
Hpy8I GTNNAC 2 cut(s) 61, 286
HpyAV CCTTC 2 cut(s) 25, 613
HpyCH4III ACNGT 3 cut(s) 55, 74, 272
HpyCH4V TGCA 6 cut(s) 35, 69, 136, 191, 367, 634
HpyF3I CTNAG 2 cut(s) 298, 681
Hsp92II CATG 3 cut(s) 371, 593, 673
HspAI GCGC 1 cut(s) 685
Kpn2I TCCGGA 1 cut(s) 244
Ksp22I TGATCA 2 cut(s) 472, 499
Kzo9I GATC 3 cut(s) 472, 499, 754
LguI GCTCTTC 1 cut(s) 412
LmnI GCTCC 4 cut(s) 312, 331, 371, 391
LpnPI CCDG 7 cut(s) 75, 79, 258, 260, 285, 620, 723
Lsp1109I GCAGC 1 cut(s) 175
MaeI CTAG 2 cut(s) 162, 399
MaeIII GTNAC 1 cut(s) 208
MalI GATC 3 cut(s) 474, 501, 756
MboI GATC 3 cut(s) 472, 499, 754
MboII GAAGA 2 cut(s) 113, 399
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 7 cut(s) 8, 149, 256, 355, 599, 698, 735
MlyI GAGTC 2 cut(s) 568, 647
MmeI TCCRAC 1 cut(s) 701
MnlI CCTC 9 cut(s) 138, 165, 303, 395, 475, 502, 513, 524, 717
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 2 cut(s) 238, 444
MseI TTAA 3 cut(s) 147, 354, 740
MspI CCGG 2 cut(s) 245, 710
NdeII GATC 3 cut(s) 472, 499, 754
NlaIII CATG 3 cut(s) 371, 593, 673
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 2 cut(s) 593, 673
NspV TTCGAA 1 cut(s) 432
PciI ACATGT 1 cut(s) 669
PciSI GCTCTTC 1 cut(s) 412
PdmI GAANNNNTTC 2 cut(s) 238, 444
PfeI GAWTC 1 cut(s) 395
PinAI ACCGGT 1 cut(s) 709
PkrI GCNGC 3 cut(s) 190, 459, 486
PleI GAGTC 2 cut(s) 567, 646
PpsI GAGTC 2 cut(s) 567, 646
PscI ACATGT 1 cut(s) 669
PsiI TTATAA 1 cut(s) 774
Psp124BI GAGCTC 1 cut(s) 110
RsaI GTAC 3 cut(s) 143, 588, 719
RsaNI GTAC 3 cut(s) 142, 587, 718
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 412
SaqAI TTAA 3 cut(s) 147, 354, 740
SatI GCNGC 3 cut(s) 189, 458, 485
Sau3AI GATC 3 cut(s) 472, 499, 754
SchI GAGTC 2 cut(s) 568, 647
SduI GDGCHC 1 cut(s) 110
SetI ASST 7 cut(s) 17, 110, 299, 376, 524, 535, 655
SfuI TTCGAA 1 cut(s) 432
SmlI CTYRAG 3 cut(s) 466, 493, 721
SmoI CTYRAG 3 cut(s) 466, 493, 721
Sse9I AATT 7 cut(s) 8, 149, 256, 355, 599, 698, 735
SsiI CCGC 2 cut(s) 458, 485
SspI AATATT 1 cut(s) 237
SspMI CTAG 2 cut(s) 162, 399
SstI GAGCTC 1 cut(s) 110
TaaI ACNGT 3 cut(s) 55, 74, 272
TaqI TCGA 3 cut(s) 393, 426, 432
TasI AATT 7 cut(s) 8, 149, 256, 355, 599, 698, 735
TatI WGTACW 3 cut(s) 141, 586, 717
TauI GCSGC 2 cut(s) 460, 487
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 3 cut(s) 147, 354, 740
Tru9I TTAA 3 cut(s) 147, 354, 740
TscAI CASTG 4 cut(s) 37, 213, 459, 486
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 231, 368, 632
TspRI CASTG 4 cut(s) 37, 213, 459, 486
XapI RAATTY 4 cut(s) 149, 599, 698, 735
XbaI TCTAGA 1 cut(s) 398
XceI RCATGY 2 cut(s) 593, 673
XmnI GAANNNNTTC 2 cut(s) 238, 444
XspI CTAG 2 cut(s) 162, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.