Rh6CG478500

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000298
Physical Location & Seq
Forward (+)
64647685 .. 64648278
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG478500.1

Sequence Viewer

Length: 594 bp
ATGCCGATTGCAAAGAGAAACCGAGGCGACCGCTCAGGGGATTATCCAAGGCAACCCGAAGCACCACCGATCATCCAAGAGAAATGGGAACCTGACGGACCTTGCATAATCCAACACCTTCAAAATGACTTACTCATTGAGATTCTGTCATGGCTCCCGGTGAAGACCATCTGGAATTGTAAGTTTGTTTGTAAAGCCTGGCTTTTAGTAATTTCTGAACCCCGTTTTGTCCGTCTGCACCATTCAAGATCTGCCTCTGGGATCTTGATTCAGATCCGTAGTACTCCCCATAATAAAAATATTGCTAGGAGACTGCATTTCACTCAGGTAGATAAGTGTGCTGGTTCTGATAATTTGCTCATGGAAAAATTGACCTTCACTACTAAAAACACTGCACCCGTTGATGTATTTACAGTAGTGAACTCCTGCAACGGTTTGGTTTGTTTGTTTGGGTATAAAGAAGAGAGCTCTTTGATTGTGTGTAATCCTCTTTTGCACGAGTACATTAAAGTTCCTCTCGCTAGAAATAAGAAATGGGGAGATTTTGCTGCACTTGGTTTTAGCTCAGTGACAAATGAATACAAGTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

197

Amino Acids

22.45

Weight (kDa)

9.11

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 38 - 77 5.6e-07 F-box domain
FBA_3 PF08268 120 - 197 2e-06 F-box associated beta propeller domain
FBA_1 PF07734 126 - 197 1.4e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 1 cut(s) 31
AclWI GGATC 2 cut(s) 268, 269
AfaI GTAC 2 cut(s) 283, 503
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 2 cut(s) 122, 246
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 2 cut(s) 468, 564
AluI AGCT 2 cut(s) 468, 564
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 268, 269
ApeKI GCWGC 1 cut(s) 548
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 470
BauI CACGAG 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 535
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 2 cut(s) 306, 522
BglII AGATCT 1 cut(s) 248
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 2 cut(s) 158, 199
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 90, 155
BmrFI CCNGG 2 cut(s) 158, 199
BpiI GAAGAC 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 22, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 272
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 22, 47
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 3 cut(s) 48, 338, 579
BseXI GCAGC 1 cut(s) 535
BsgI GTGCAG 3 cut(s) 221, 378, 534
Bsh1285I CGRYCG 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 470
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 4 cut(s) 69, 248, 261, 273
BspACI CCGC 1 cut(s) 31
BspCNI CTCAG 3 cut(s) 47, 337, 578
BspLI GGNNCC 2 cut(s) 90, 155
BspPI GGATC 2 cut(s) 268, 269
BsrBI CCGCTC 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 22, 47
BssMI GATC 4 cut(s) 69, 248, 261, 273
BssSI CACGAG 1 cut(s) 497
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 415, 434
Bst6I CTCTTC 1 cut(s) 456
BstDEI CTNAG 3 cut(s) 34, 324, 565
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 4 cut(s) 72, 251, 264, 276
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 4 cut(s) 69, 248, 261, 273
BstMCI CGRYCG 1 cut(s) 31
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 156, 197
BstV1I GCAGC 1 cut(s) 535
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 3 cut(s) 248, 261, 273
BstYI RGATCY 3 cut(s) 248, 261, 273
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 2 cut(s) 390, 573
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 282, 502
CviAII CATG 2 cut(s) 150, 361
CviJI RGCY 5 cut(s) 154, 197, 202, 468, 564
CviKI_1 RGCY 5 cut(s) 154, 197, 202, 468, 564
CviQI GTAC 2 cut(s) 282, 502
DdeI CTNAG 3 cut(s) 34, 324, 565
DpnI GATC 4 cut(s) 71, 250, 263, 275
DpnII GATC 4 cut(s) 69, 248, 261, 273
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 468
EcoICRI GAGCTC 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 2 cut(s) 153, 364
FaiI YATR 5 cut(s) 107, 151, 291, 362, 456
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 2 cut(s) 149, 360
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 2 cut(s) 306, 522
GluI GCNGC 1 cut(s) 549
HapII CCGG 1 cut(s) 158
Hin1II CATG 2 cut(s) 153, 364
HinfI GANTC 2 cut(s) 142, 268
HpaII CCGG 1 cut(s) 158
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 3 cut(s) 217, 273, 349
Hpy188III TCNNGA 3 cut(s) 172, 246, 265
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 2 cut(s) 128, 385
HpyCH4III ACNGT 2 cut(s) 415, 434
HpyCH4V TGCA 8 cut(s) 11, 105, 238, 316, 395, 429, 496, 551
HpyF3I CTNAG 3 cut(s) 34, 324, 565
Hsp92II CATG 2 cut(s) 153, 364
Kzo9I GATC 4 cut(s) 69, 248, 261, 273
LmnI GCTCC 1 cut(s) 159
Lsp1109I GCAGC 1 cut(s) 535
MaeI CTAG 2 cut(s) 306, 522
MaeIII GTNAC 1 cut(s) 568
MalI GATC 4 cut(s) 71, 250, 263, 275
MbiI CCGCTC 1 cut(s) 33
MboI GATC 4 cut(s) 69, 248, 261, 273
MboII GAAGA 2 cut(s) 175, 473
MflI RGATCY 3 cut(s) 248, 261, 273
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 4 cut(s) 175, 210, 352, 368
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 4 cut(s) 17, 265, 498, 525
MseI TTAA 1 cut(s) 507
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 158, 199
MvaI CCWGG 1 cut(s) 199
NciI CCSGG 1 cut(s) 158
NdeII GATC 4 cut(s) 69, 248, 261, 273
NlaIII CATG 2 cut(s) 153, 364
NlaIV GGNNCC 2 cut(s) 90, 155
NmuCI GTSAC 1 cut(s) 568
PfeI GAWTC 2 cut(s) 142, 268
PkrI GCNGC 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 90, 155
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 3 cut(s) 248, 261, 273
RsaI GTAC 2 cut(s) 283, 503
RsaNI GTAC 2 cut(s) 282, 502
SacI GAGCTC 1 cut(s) 470
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 4 cut(s) 69, 248, 261, 273
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 158, 199
SduI GDGCHC 1 cut(s) 470
SetI ASST 7 cut(s) 94, 103, 120, 330, 377, 470, 566
SinI GGWCC 1 cut(s) 98
Sse9I AATT 4 cut(s) 175, 210, 352, 368
SsiI CCGC 1 cut(s) 31
SspI AATATT 1 cut(s) 301
SspMI CTAG 2 cut(s) 306, 522
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 2 cut(s) 156, 197
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 415, 434
TasI AATT 4 cut(s) 175, 210, 352, 368
TatI WGTACW 2 cut(s) 281, 501
TfiI GAWTC 2 cut(s) 142, 268
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 2 cut(s) 397, 573
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 1 cut(s) 591
TspGWI ACGGA 3 cut(s) 111, 221, 266
TspRI CASTG 2 cut(s) 397, 573
VpaK11BI GGWCC 1 cut(s) 98
XspI CTAG 2 cut(s) 306, 522
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.