Rh6BG436500

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000298
Physical Location & Seq
Reverse (-)
65600274 .. 65600633
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG436500.1

Sequence Viewer

Length: 360 bp
ATGTTCTTCAGTGATGGTGAAATCCTTATGATATATAATGATCGGGTTGTGGTCTTTTATAATCAAGAAAAGGAGAGTTTCAAGAAAACTAAAATTATTCAGACTCGATGCAATTTCTGTGATGCTGCTGATCGAATACAGTCCGTGCTTTGTTTCACTCCATATATAAGGAGAGGAGGTGACAAGGATAAAAGCAAATACATAGGAATTCTGACACGCTCTTTGATGATGGTATTAGTGATCCTGCTGATTCTAGGATGGCAATCCGCGAGTCCACAAAGCTTATCTCGGACATGGATTATTCTCCAGATTTCACTCGAGGGATTGGATCCAAGTTCTCGATGTGCCAAAGATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

119

Amino Acids

13.68

Weight (kDa)

8.98

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AccII CGCG 1 cut(s) 269
AciI CCGC 1 cut(s) 267
AclWI GGATC 3 cut(s) 235, 323, 336
AcsI RAATTY 1 cut(s) 207
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
AlwI GGATC 3 cut(s) 235, 323, 336
Ama87I CYCGRG 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 207
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AsuHPI GGTGA 2 cut(s) 29, 191
AvaI CYCGRG 1 cut(s) 317
BamHI GGATCC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 112
BccI CCATC 3 cut(s) 8, 223, 252
BfaI CTAG 1 cut(s) 254
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 2 cut(s) 98, 112
BpmI CTGGAG 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bse8I GATNNNNATC 1 cut(s) 262
BseGI GGATG 1 cut(s) 263
BseJI GATNNNNATC 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 269
BsiHKCI CYCGRG 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 317
Bsp143I GATC 4 cut(s) 40, 130, 240, 328
BspACI CCGC 1 cut(s) 267
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 330
BspPI GGATC 3 cut(s) 235, 323, 336
BssMI GATC 4 cut(s) 40, 130, 240, 328
Bst4CI ACNGT 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 269
BstKTI GATC 4 cut(s) 43, 133, 243, 331
BstMBI GATC 4 cut(s) 40, 130, 240, 328
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 16
CviAII CATG 1 cut(s) 294
CviJI RGCY 1 cut(s) 282
CviKI_1 RGCY 1 cut(s) 282
DdeI CTNAG 1 cut(s) 357
DpnI GATC 4 cut(s) 42, 132, 242, 330
DpnII GATC 4 cut(s) 40, 130, 240, 328
Eco88I CYCGRG 1 cut(s) 317
EcoRI GAATTC 1 cut(s) 207
FaeI CATG 1 cut(s) 297
FaiI YATR 9 cut(s) 29, 34, 36, 60, 163, 165, 167, 203, 295
FatI CATG 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 254
GluI GCNGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 290
Hin1II CATG 1 cut(s) 297
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 3 cut(s) 103, 250, 271
HphI GGTGA 2 cut(s) 29, 191
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 102, 213, 291
Hpy188III TCNNGA 4 cut(s) 65, 82, 307, 339
Hpy8I GTNNAC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 1 cut(s) 297
Kzo9I GATC 4 cut(s) 40, 130, 240, 328
LpnPI CCDG 2 cut(s) 257, 320
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 98, 112
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 179
MalI GATC 4 cut(s) 42, 132, 242, 330
MboI GATC 4 cut(s) 40, 130, 240, 328
MflI RGATCY 1 cut(s) 328
MluCI AATT 3 cut(s) 93, 112, 207
MlyI GAGTC 2 cut(s) 97, 280
MnlI CCTC 3 cut(s) 167, 170, 313
MvnI CGCG 1 cut(s) 269
NdeII GATC 4 cut(s) 40, 130, 240, 328
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 179
PaeR7I CTCGAG 1 cut(s) 317
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 2 cut(s) 97, 279
PpsI GAGTC 2 cut(s) 97, 279
PsiI TTATAA 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 330
PspXI VCTCGAGB 1 cut(s) 317
PsuI RGATCY 1 cut(s) 328
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 4 cut(s) 40, 130, 240, 328
SchI GAGTC 2 cut(s) 97, 280
SetI ASST 2 cut(s) 181, 284
SfaNI GCATC 2 cut(s) 98, 112
Sfr274I CTCGAG 1 cut(s) 317
SlaI CTCGAG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 3 cut(s) 93, 112, 207
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 4 cut(s) 106, 133, 318, 340
TasI AATT 3 cut(s) 93, 112, 207
TfiI GAWTC 1 cut(s) 250
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 179
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 16
XapI RAATTY 1 cut(s) 207
XhoI CTCGAG 1 cut(s) 317
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.