Rorug04G0159000

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000298
Physical Location & Seq
Forward (+)
27752288 .. 27753112
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0159000.1

Sequence Viewer

Length: 462 bp
ATGAGAAACAACACGGAAAGTGCAAATTCTGAGCCTCTTGAGCGTGACGACGGCGCTGAGGCGGTTACCTCAATTCCCGATTTTTCTGGCAGTGAGGATGCGGTGCCGCAGCTGCTGCACGTCGTCTTTTCAGAACCATCGAAGAGCAAGACGAGAATGAATCTGACGACGATGAGTATATCCCCAATAAGTTCAGTCGGTTTCTTCACGTTACAAACCCTCAAGCTCGCCGCAATTCCTTCACCTTCTTCTTCTTTACGCTCCGTTTTCAAACCATTATCCAAAACCTTCCTCTACTGCCATAGCCACACACCAAGACCTCAAGTTCCTCTCTTCTTCGTCAAGGGCTTTTTAGCCTCGGCCGTACAATCCACTGTCGCTACAGCACCAAAAGCAACAAGCCCAGATGAGAAAGGTGTGAAACCACAGTGGAAAGTGATAGATTTCAAGGGGCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

153

Amino Acids

16.55

Weight (kDa)

9.13

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AciI CCGC 4 cut(s) 62, 101, 107, 231
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 1 cut(s) 366
AgsI TTSAA 2 cut(s) 271, 448
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 2 cut(s) 112, 226
AluI AGCT 2 cut(s) 112, 226
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 109, 112, 115
ApoI RAATTY 1 cut(s) 25
AspLEI GCGC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 234
BanI GGYRCC 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 99, 102, 121
BccI CCATC 1 cut(s) 145
BceAI ACGGC 2 cut(s) 67, 347
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 5 cut(s) 107, 110, 113, 116, 231
BlsI GCNGC 5 cut(s) 108, 111, 114, 117, 232
BmgBI CACGTC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 3 cut(s) 59, 206, 306
BsaJI CCNNGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 21, 48
BseX3I CGGCCG 1 cut(s) 360
BseXI GCAGC 3 cut(s) 99, 102, 121
BsgI GTGCAG 1 cut(s) 101
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 363
BsnI GGCC 1 cut(s) 362
BspACI CCGC 4 cut(s) 62, 101, 107, 231
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 2 cut(s) 22, 49
BspLI GGNNCC 1 cut(s) 105
BspQI GCTCTTC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 376, 429
Bst6I CTCTTC 2 cut(s) 137, 338
BstAPI GCANNNNNTGC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 30, 57
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 103
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 4 cut(s) 40, 112, 115, 392
BstPI GGTNACC 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 99, 102, 121
BstZI CGGCCG 1 cut(s) 360
BsuRI GGCC 1 cut(s) 362
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 3 cut(s) 97, 372, 434
Cac8I GCNNGC 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 115
CfoI GCGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 365
CviAII CATG 1 cut(s) 455
CviJI RGCY 8 cut(s) 34, 112, 226, 306, 348, 356, 362, 402
CviKI_1 RGCY 8 cut(s) 34, 112, 226, 306, 348, 356, 362, 402
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 2 cut(s) 30, 57
EaeI YGGCCR 1 cut(s) 360
EagI CGGCCG 1 cut(s) 360
Eam1104I CTCTTC 2 cut(s) 137, 338
EarI CTCTTC 2 cut(s) 137, 338
EclXI CGGCCG 1 cut(s) 360
Eco52I CGGCCG 1 cut(s) 360
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
FaeI CATG 1 cut(s) 458
FaiI YATR 3 cut(s) 179, 303, 456
FatI CATG 1 cut(s) 454
Fnu4HI GCNGC 5 cut(s) 107, 110, 113, 116, 231
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 5 cut(s) 107, 110, 113, 116, 231
GlaI GCGC 1 cut(s) 55
GluI GCNGC 5 cut(s) 107, 110, 113, 116, 231
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 1 cut(s) 362
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 458
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 1 cut(s) 160
HphI GGTGA 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 31, 133, 165
Hpy188III TCNNGA 2 cut(s) 38, 77
Hpy99I CGWCG 3 cut(s) 53, 125, 172
HpyAV CCTTC 3 cut(s) 249, 255, 298
HpyCH4III ACNGT 2 cut(s) 376, 429
HpyCH4IV ACGT 2 cut(s) 120, 209
HpyCH4V TGCA 2 cut(s) 23, 118
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 112, 115, 392
HpyF3I CTNAG 2 cut(s) 30, 57
HpySE526I ACGT 2 cut(s) 120, 209
Hsp92II CATG 1 cut(s) 458
HspAI GCGC 1 cut(s) 54
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 2 cut(s) 72, 417
Lsp1109I GCAGC 3 cut(s) 99, 102, 121
LweI GCATC 1 cut(s) 88
MaeII ACGT 2 cut(s) 120, 209
MaeIII GTNAC 3 cut(s) 44, 64, 210
MboII GAAGA 6 cut(s) 154, 196, 240, 243, 325, 328
MluCI AATT 3 cut(s) 25, 72, 234
MnlI CCTC 9 cut(s) 45, 52, 79, 88, 230, 302, 330, 339, 367
MspA1I CMGCKG 1 cut(s) 112
MwoI GCNNNNNNNGC 4 cut(s) 40, 112, 115, 392
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 1 cut(s) 105
NmeAIII GCCGAG 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 5 cut(s) 108, 111, 114, 117, 232
PspEI GGTNACC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 137
SatI GCNGC 5 cut(s) 107, 110, 113, 116, 231
SetI ASST 9 cut(s) 71, 114, 123, 212, 228, 247, 290, 322, 418
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 381
SmlI CTYRAG 3 cut(s) 38, 221, 321
SmoI CTYRAG 3 cut(s) 38, 221, 321
Sse9I AATT 3 cut(s) 25, 72, 234
SsiI CCGC 4 cut(s) 62, 101, 107, 231
TaaI ACNGT 2 cut(s) 376, 429
TaiI ACGT 2 cut(s) 123, 212
TaqI TCGA 1 cut(s) 140
TasI AATT 3 cut(s) 25, 72, 234
TauI GCSGC 2 cut(s) 109, 233
TfiI GAWTC 1 cut(s) 160
TscAI CASTG 3 cut(s) 97, 379, 434
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 3 cut(s) 109, 112, 115
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 2 cut(s) 29, 253
TspRI CASTG 3 cut(s) 97, 379, 434
XapI RAATTY 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.