Prupe.6G217100_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000298
Physical Location & Seq
Forward (+)
22413972 .. 22415620
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G217100.1

Sequence Viewer

Length: 459 bp
ATGGTCTGCTTTGTTTTGGAGCTAATGAAGGCTTTCTCCTGTTTGTGTGCAACCCTGTTTTGGGGGAGTACATCACCATTCCACCTGCTAATAGAAACGACAAGTGGCTTATTGTTGGACTTGGTTTTTGCATTGGGACCAATGTGTACAAGGTGTTTGAACAACCCGGACACTGAGGCTGAGATTTACACCATTGGCGCAGGAGGAGCATGGAGAAGCATTGGACCCCCTCCTCCTGGGGATTTTAATAACTTATTGTTCAATAATTTTCTTCATGGAGCTGTTCATTGGATTCCCTATGGTGGTAGAAGTACAAGTTCCCAGGTTATACAATCTTTTGACTTTGAAAGAGAACAATTTCGGCCATTATCACTACCTAGTTTGCTAGCAAAGAATGAATTTCTGTATAGTTTGACATTGGAAGTGCTAGGCGGAAACAAAATAGAATTTTTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

153

Amino Acids

16.87

Weight (kDa)

5.02

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 93
Acc36I ACCTGC 1 cut(s) 93
AciI CCGC 1 cut(s) 432
AcoI YGGCCR 1 cut(s) 362
AcsI RAATTY 2 cut(s) 398, 446
AfaI GTAC 3 cut(s) 70, 148, 313
AfiI CCNNNNNNNGG 4 cut(s) 60, 61, 236, 302
AgsI TTSAA 3 cut(s) 160, 262, 347
AjnI CCWGG 2 cut(s) 235, 321
AluBI AGCT 2 cut(s) 22, 281
AluI AGCT 2 cut(s) 22, 281
AoxI GGCC 1 cut(s) 362
ApoI RAATTY 2 cut(s) 398, 446
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
Asp700I GAANNNNTTC 2 cut(s) 32, 357
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 137, 224
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 66
AsuNHI GCTAGC 1 cut(s) 385
AvaII GGWCC 2 cut(s) 137, 224
BciT130I CCWGG 2 cut(s) 237, 323
BcnI CCSGG 1 cut(s) 167
BfaI CTAG 3 cut(s) 378, 386, 428
BfuAI ACCTGC 1 cut(s) 93
Bme1390I CCNGG 3 cut(s) 167, 237, 323
Bme18I GGWCC 2 cut(s) 137, 224
BmgT120I GGNCC 2 cut(s) 137, 224
BmiI GGNNCC 2 cut(s) 138, 226
BmrFI CCNGG 3 cut(s) 167, 237, 323
BmtI GCTAGC 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 236, 321
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 61, 236, 302
BseBI CCWGG 2 cut(s) 237, 323
BseDI CCNNGG 2 cut(s) 236, 321
BseLI CCNNNNNNNGG 4 cut(s) 60, 61, 236, 302
BseMII CTCAG 2 cut(s) 165, 171
BseRI GAGGAG 2 cut(s) 219, 222
BshFI GGCC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 4 cut(s) 60, 61, 236, 302
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 1 cut(s) 364
Bsp1407I TGTACA 1 cut(s) 146
BspACI CCGC 1 cut(s) 432
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 2 cut(s) 166, 172
BspLI GGNNCC 2 cut(s) 138, 226
BspMI ACCTGC 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 389
BsrGI TGTACA 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 236, 321
Bst2UI CCWGG 2 cut(s) 237, 323
BstAUI TGTACA 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 2 cut(s) 174, 180
BstHHI GCGC 1 cut(s) 200
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 2 cut(s) 237, 323
BstSCI CCNGG 3 cut(s) 165, 235, 321
BsuRI GGCC 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 387
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 137, 224
Csp6I GTAC 3 cut(s) 69, 147, 312
CviAII CATG 2 cut(s) 210, 275
CviJI RGCY 6 cut(s) 22, 32, 108, 179, 281, 364
CviKI_1 RGCY 6 cut(s) 22, 32, 108, 179, 281, 364
CviQI GTAC 3 cut(s) 69, 147, 312
DdeI CTNAG 2 cut(s) 174, 180
EaeI YGGCCR 1 cut(s) 362
EciI GGCGGA 1 cut(s) 447
Eco47I GGWCC 2 cut(s) 137, 224
EcoRII CCWGG 2 cut(s) 235, 321
FaeI CATG 2 cut(s) 213, 278
FaiI YATR 5 cut(s) 211, 276, 300, 329, 408
FaqI GGGAC 1 cut(s) 150
FatI CATG 2 cut(s) 209, 274
FspBI CTAG 3 cut(s) 378, 386, 428
GlaI GCGC 1 cut(s) 199
HaeIII GGCC 1 cut(s) 364
HapII CCGG 1 cut(s) 167
HhaI GCGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 213, 278
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 1 cut(s) 292
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 147
Hpy8I GTNNAC 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 50, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 174, 180
Hsp92II CATG 2 cut(s) 213, 278
HspAI GCGC 1 cut(s) 198
LmnI GCTCC 3 cut(s) 19, 206, 278
LpnPI CCDG 9 cut(s) 52, 68, 98, 180, 186, 222, 249, 308, 335
MaeI CTAG 3 cut(s) 378, 386, 428
MboII GAAGA 1 cut(s) 263
MluCI AATT 4 cut(s) 265, 356, 398, 446
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 4 cut(s) 169, 197, 240, 243
MroXI GAANNNNTTC 2 cut(s) 32, 357
MseI TTAA 2 cut(s) 246, 457
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 3 cut(s) 167, 237, 323
MvaI CCWGG 2 cut(s) 237, 323
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 167
NheI GCTAGC 1 cut(s) 385
NlaIII CATG 2 cut(s) 213, 278
NlaIV GGNNCC 2 cut(s) 138, 226
PaqCI CACCTGC 1 cut(s) 93
PdmI GAANNNNTTC 2 cut(s) 32, 357
PfeI GAWTC 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 235, 321
PspGI CCWGG 2 cut(s) 235, 321
PspN4I GGNNCC 2 cut(s) 138, 226
PspPI GGNCC 2 cut(s) 137, 224
RsaI GTAC 3 cut(s) 70, 148, 313
RsaNI GTAC 3 cut(s) 69, 147, 312
SaqAI TTAA 2 cut(s) 246, 457
Sau96I GGNCC 2 cut(s) 137, 224
ScrFI CCNGG 3 cut(s) 167, 237, 323
SetI ASST 6 cut(s) 24, 87, 155, 283, 327, 379
SinI GGWCC 2 cut(s) 137, 224
Sse9I AATT 4 cut(s) 265, 356, 398, 446
SsiI CCGC 1 cut(s) 432
SspMI CTAG 3 cut(s) 378, 386, 428
StyD4I CCNGG 3 cut(s) 165, 235, 321
TasI AATT 4 cut(s) 265, 356, 398, 446
TatI WGTACW 3 cut(s) 68, 146, 311
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 246, 457
Tru9I TTAA 2 cut(s) 246, 457
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 4 cut(s) 41, 263, 275, 411
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 137, 224
XapI RAATTY 2 cut(s) 398, 446
XmnI GAANNNNTTC 2 cut(s) 32, 357
XspI CTAG 3 cut(s) 378, 386, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.