pycom03g13170

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
14081438 .. 14082677
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g13170.2

Sequence Viewer

Length: 354 bp
ATGAAGGAATATGGGGTCCAGCAGTCTTGGACTAAAATTCTTGTCATTGATAACTTGTCCCCAACATGTTTCGGGTACATGCCAATTATGTTTTTGAGTAATGGAGAAATCCTAATAGCATACGTGGAAGAACAAAACAACGGCAGTGGCAGCCGGCTTGTTGGTTGTTTCAATCAAGAAGCAAAAACTTTCATGGAAAGGATAAGAGATAGGAACAAGCCGATTGGTAAATGGAGTTATGATCGTTCTGGTTTTGGGATGCCAACCCACATGTACTCTTATGACTTAAGACGGCGTGCTTTTGACAGTTGGTTCTTCCGAAATTCATATCTGATTCACTTTTGTTATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.84

Weight (kDa)

8.82

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 36, 322
AfaI GTAC 2 cut(s) 77, 275
AflII CTTAAG 1 cut(s) 286
AflIII ACRYGT 2 cut(s) 65, 270
AgsI TTSAA 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 2 cut(s) 36, 322
AspS9I GGNCC 1 cut(s) 16
AvaII GGWCC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 162
BceAI ACGGC 2 cut(s) 157, 308
BfrI CTTAAG 1 cut(s) 286
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 17
BmsI GCATC 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 124
Bse118I RCCGGY 1 cut(s) 153
BseGI GGATG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 153
BssMI GATC 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 308
BstAFI CTTAAG 1 cut(s) 286
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 155, 297
BstF5I GGATG 1 cut(s) 264
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNSI RCATGY 3 cut(s) 69, 82, 274
BstV1I GCAGC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 155, 297
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 76, 274
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 4 cut(s) 66, 79, 193, 271
CviJI RGCY 3 cut(s) 153, 157, 220
CviKI_1 RGCY 3 cut(s) 153, 157, 220
CviQI GTAC 2 cut(s) 76, 274
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 16
FaeI CATG 4 cut(s) 69, 82, 196, 274
FaqI GGGAC 1 cut(s) 43
FatI CATG 4 cut(s) 65, 78, 192, 270
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
HapII CCGG 1 cut(s) 154
Hin1II CATG 4 cut(s) 69, 82, 196, 274
HinfI GANTC 1 cut(s) 334
HpaII CCGG 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 320, 333
Hpy188III TCNNGA 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 4 cut(s) 69, 82, 196, 274
KroI GCCGGC 1 cut(s) 153
KroNI GCCGGC 1 cut(s) 155
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 32, 167, 234
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 249
MaeII ACGT 1 cut(s) 123
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 2 cut(s) 140, 307
MluCI AATT 3 cut(s) 36, 84, 322
MroNI GCCGGC 1 cut(s) 153
MseI TTAA 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 286
MspI CCGG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 150
NaeI GCCGGC 1 cut(s) 155
NdeII GATC 1 cut(s) 241
NgoMIV GCCGGC 1 cut(s) 153
NlaIII CATG 4 cut(s) 69, 82, 196, 274
NlaIV GGNNCC 1 cut(s) 17
NspI RCATGY 3 cut(s) 69, 82, 274
PciI ACATGT 2 cut(s) 65, 270
PdiI GCCGGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 124
PscI ACATGT 2 cut(s) 65, 270
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 16
RsaI GTAC 2 cut(s) 77, 275
RsaNI GTAC 2 cut(s) 76, 274
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 16
SetI ASST 1 cut(s) 126
SfaNI GCATC 1 cut(s) 249
SinI GGWCC 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 3 cut(s) 36, 84, 322
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 126
TasI AATT 3 cut(s) 36, 84, 322
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 3 cut(s) 17, 181, 315
TspRI CASTG 1 cut(s) 151
Vha464I CTTAAG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 2 cut(s) 36, 322
XceI RCATGY 3 cut(s) 69, 82, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.