RchiOBHm_Chr4g0419631

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Reverse (-)
45118360 .. 45119025
666 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38950

Sequence Viewer

Length: 666 bp
ATGGCTACCAGTTTTCCGCTGCTTCTGACTGCTGAGGTATTTCTGATAAATTCATGCAATGGATTAGTTTGTTTGGCTAGGGGGCATCTTGGAGATGGCTTGTATGTATGCAATCCAATTTTGGGTGAGTACATTAGCATTCCTTCTCCTGATAAGAGTATAACCTGCTGGTTCAAATTTGTCGGACTTGGTTTTAACGCCAGGACCAATGAGTACAAGGTCTTGCAGACATGCTCCAATGGCGAGTCTCAGATATACACCATTGGTACAGGAGTTTGGAGAAGCATTGGAATGGCTCCTAGTGGCACTTCCATGGTACATTCATTGTACTCACCGTTCAATTCTTTTCTGCATGGAGCTCTTCATTGGTTTCCCTGCTCTTTTGATGGTTCTCAGTTTATGCAGTCTTTCAACTTTGAGACGGAACAATTTCGACCACTTCCCCCACCATTCAAAGGTCATTTGAAGTTATCCCAACATTATAATCATCTAAAGTTGGGAGTGTTAAAAGGTTGTCTCTTCCTATGTGTGTTTGGTGCTTATAATAGTGAATTTGACATGTGGGTTATGAAAGATTATGGTGTCCAAGAGTCTTGGACAAAAATTCTTGTCATTGAAAACTTGTATCCATGGGTTCGCCATGGCCTGCATAATGCATATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

221

Amino Acids

24.96

Weight (kDa)

7.09

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 11 - 126 3.8e-07 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 13 - 207 6.5e-23 F-box associated beta propeller domain
FBA_3 PF08268 13 - 204 3.6e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 483, 543
Acc36I ACCTGC 1 cut(s) 173
AciI CCGC 1 cut(s) 17
AcsI RAATTY 4 cut(s) 49, 176, 551, 603
AfaI GTAC 5 cut(s) 131, 215, 268, 318, 329
AfiI CCNNNNNNNGG 2 cut(s) 122, 455
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 6 cut(s) 175, 340, 412, 454, 466, 617
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 3 cut(s) 252, 413, 521
AoxI GGCC 1 cut(s) 643
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 4 cut(s) 49, 176, 551, 603
Asp700I GAANNNNTTC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 137, 324
AvaII GGWCC 1 cut(s) 204
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BanII GRGCYC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 361
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 6
BccI CCATC 2 cut(s) 89, 380
BciT130I CCWGG 1 cut(s) 202
BciVI GTATCC 1 cut(s) 636
BcoDI GTCTC 3 cut(s) 252, 413, 521
BfaI CTAG 2 cut(s) 78, 300
BfuAI ACCTGC 1 cut(s) 173
BfuI GTATCC 1 cut(s) 636
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 312, 629, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 455
Bse1I ACTGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 3 cut(s) 312, 629, 640
BseLI CCNNNNNNNGG 2 cut(s) 122, 455
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 3 cut(s) 24, 263, 407
BseNI ACTGG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 6
BshFI GGCC 1 cut(s) 645
BsiHKAI GWGCWC 1 cut(s) 361
BslI CCNNNNNNNGG 2 cut(s) 122, 455
BsmAI GTCTC 3 cut(s) 252, 413, 521
BsmBI CGTCTC 1 cut(s) 413
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 1 cut(s) 645
Bsp1286I GDGCHC 1 cut(s) 361
Bsp19I CCATGG 3 cut(s) 312, 629, 640
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 645
BspCNI CTCAG 3 cut(s) 25, 262, 406
BspLI GGNNCC 1 cut(s) 297
BspMI ACCTGC 1 cut(s) 173
BspQI GCTCTTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 1 cut(s) 9
BssECI CCNNGG 3 cut(s) 312, 629, 640
BssT1I CCWWGG 3 cut(s) 312, 629, 640
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 336
Bst6I CTCTTC 2 cut(s) 366, 524
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 3 cut(s) 33, 249, 393
BstDSI CCRYGG 3 cut(s) 312, 629, 640
BstMAI GTCTC 3 cut(s) 252, 413, 521
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 202
BstNSI RCATGY 2 cut(s) 234, 562
BstSCI CCNGG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 6
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 1 cut(s) 645
BtgI CCRYGG 3 cut(s) 312, 629, 640
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 647
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 5 cut(s) 130, 214, 267, 317, 328
CviAII CATG 7 cut(s) 54, 231, 313, 353, 559, 630, 641
CviJI RGCY 6 cut(s) 5, 77, 99, 296, 359, 645
CviKI_1 RGCY 6 cut(s) 5, 77, 99, 296, 359, 645
CviQI GTAC 5 cut(s) 130, 214, 267, 317, 328
DdeI CTNAG 3 cut(s) 33, 249, 393
Eam1104I CTCTTC 2 cut(s) 366, 524
EarI CTCTTC 2 cut(s) 366, 524
Ecl136II GAGCTC 1 cut(s) 359
Eco130I CCWWGG 3 cut(s) 312, 629, 640
Eco24I GRGCYC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 3 cut(s) 312, 629, 640
EcoT22I ATGCAT 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 361
ErhI CCWWGG 3 cut(s) 312, 629, 640
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 7 cut(s) 57, 234, 316, 356, 562, 633, 644
FatI CATG 7 cut(s) 53, 230, 312, 352, 558, 629, 640
Fnu4HI GCNGC 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 2 cut(s) 78, 300
GluI GCNGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 645
Hin1II CATG 7 cut(s) 57, 234, 316, 356, 562, 633, 644
HinfI GANTC 2 cut(s) 245, 590
HphI GGTGA 2 cut(s) 137, 324
Hpy188I TCNGA 4 cut(s) 27, 45, 185, 252
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4V TGCA 7 cut(s) 57, 111, 226, 352, 403, 649, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 3 cut(s) 33, 249, 393
Hsp92II CATG 7 cut(s) 57, 234, 316, 356, 562, 633, 644
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 3 cut(s) 239, 301, 356
LpnPI CCDG 9 cut(s) 22, 154, 162, 178, 187, 214, 255, 388, 659
Lsp1109I GCAGC 1 cut(s) 6
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 78, 300
MboII GAAGA 2 cut(s) 353, 511
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 7 cut(s) 49, 117, 176, 340, 428, 551, 603
MlyI GAGTC 2 cut(s) 254, 599
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 1 cut(s) 28
Mph1103I ATGCAT 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 429
MseI TTAA 2 cut(s) 195, 506
MslI CAYNNNNRTG 3 cut(s) 290, 311, 661
MspA1I CMGCKG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 240
NcoI CCATGG 3 cut(s) 312, 629, 640
NlaIII CATG 7 cut(s) 57, 234, 316, 356, 562, 633, 644
NlaIV GGNNCC 1 cut(s) 297
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 2 cut(s) 234, 562
PciI ACATGT 1 cut(s) 558
PciSI GCTCTTC 1 cut(s) 366
PctI GAATGC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 429
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 2 cut(s) 253, 598
PpsI GAGTC 2 cut(s) 253, 598
PscI ACATGT 1 cut(s) 558
PsiI TTATAA 2 cut(s) 483, 543
Psp124BI GAGCTC 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 204
PsrI GAACNNNNNNTAC 2 cut(s) 320, 352
RsaI GTAC 5 cut(s) 131, 215, 268, 318, 329
RsaNI GTAC 5 cut(s) 130, 214, 267, 317, 328
RseI CAYNNNNRTG 3 cut(s) 290, 311, 661
SacI GAGCTC 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 2 cut(s) 195, 506
SatI GCNGC 1 cut(s) 20
Sau96I GGNCC 1 cut(s) 204
SchI GAGTC 2 cut(s) 254, 599
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 1 cut(s) 361
SetI ASST 6 cut(s) 39, 167, 222, 361, 460, 514
SfaNI GCATC 1 cut(s) 94
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 3 cut(s) 290, 311, 661
Sse9I AATT 7 cut(s) 49, 117, 176, 340, 428, 551, 603
SsiI CCGC 1 cut(s) 17
SspMI CTAG 2 cut(s) 78, 300
SstI GAGCTC 1 cut(s) 361
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 3 cut(s) 312, 629, 640
TaaI ACNGT 1 cut(s) 336
TaqI TCGA 1 cut(s) 433
TasI AATT 7 cut(s) 49, 117, 176, 340, 428, 551, 603
TatI WGTACW 3 cut(s) 129, 213, 327
Tru1I TTAA 2 cut(s) 195, 506
Tru9I TTAA 2 cut(s) 195, 506
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 42, 312, 353, 584
TspGWI ACGGA 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 4 cut(s) 49, 176, 551, 603
XceI RCATGY 2 cut(s) 234, 562
XmnI GAANNNNTTC 1 cut(s) 429
XspI CTAG 2 cut(s) 78, 300
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.