pycom05g29500

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000298
Physical Location & Seq
Forward (+)
29892813 .. 29893085
273 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29500.1

Sequence Viewer

Length: 273 bp
ATGAAGAAGTTATTCAAGCTAAGAAAGAGAGTAGCAATTAAAAGAGCAGCGATCGGCCGTACGAAAGAAGAATGGCAGCAACCCAGAGGTCCTTTCAGAATTCAACAACTTCCAGAGGGTGCAGTCATGGCCATTCTCTCAAGGCTAGTCTCCATCAAAACCATCCTTAATTGCTGGCTACGTCCGACTTCCCAATTCGGGGAAGGCCTTGTTCTATTGGTTTTTCAAGCCCAAGATGATGCATCTCAAAAACCCCTTGTCCTGTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

91

Amino Acids

10.24

Weight (kDa)

11.0

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 55, 129
AcsI RAATTY 1 cut(s) 99
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 198, 199
AgsI TTSAA 3 cut(s) 16, 104, 227
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 154
AoxI GGCC 3 cut(s) 55, 129, 205
ApeKI GCWGC 2 cut(s) 47, 76
ApoI RAATTY 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 89
AvaII GGWCC 1 cut(s) 89
BalI TGGCCA 1 cut(s) 131
BbvI GCAGC 2 cut(s) 59, 88
BccI CCATC 2 cut(s) 161, 170
BceAI ACGGC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 146
BisI GCNGC 2 cut(s) 48, 77
BlsI GCNGC 2 cut(s) 49, 78
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmsI GCATC 2 cut(s) 229, 251
BpuEI CTTGAG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 199
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 198, 199
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 59, 88
BsgI GTGCAG 1 cut(s) 141
Bsh1285I CGRYCG 2 cut(s) 54, 58
BshFI GGCC 3 cut(s) 57, 131, 207
BsiEI CGRYCG 2 cut(s) 54, 58
BsiWI CGTACG 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 198, 199
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 3 cut(s) 57, 131, 207
Bsp143I GATC 1 cut(s) 51
BspANI GGCC 3 cut(s) 57, 131, 207
BssMI GATC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 51
BstMCI CGRYCG 2 cut(s) 54, 58
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 59, 88
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 3 cut(s) 57, 131, 207
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 60
CviAII CATG 1 cut(s) 127
CviJI RGCY 8 cut(s) 19, 57, 131, 145, 178, 207, 230, 269
CviKI_1 RGCY 8 cut(s) 19, 57, 131, 145, 178, 207, 230, 269
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 2 cut(s) 55, 129
EagI CGGCCG 1 cut(s) 55
EclXI CGGCCG 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 89
Eco52I CGGCCG 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 244
FaeI CATG 1 cut(s) 130
FaiI YATR 1 cut(s) 128
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 48, 77
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 48, 77
FspBI CTAG 1 cut(s) 146
GluI GCNGC 2 cut(s) 48, 77
HaeIII GGCC 3 cut(s) 57, 131, 207
Hin1II CATG 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 98, 186
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 122, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 3 cut(s) 97, 126, 160
Lsp1109I GCAGC 2 cut(s) 59, 88
LweI GCATC 2 cut(s) 229, 251
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 181
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 2 cut(s) 16, 80
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 4 cut(s) 36, 99, 169, 194
MluNI TGGCCA 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 80, 109
Mox20I TGGCCA 1 cut(s) 131
Mph1103I ATGCAT 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 11
MscI TGGCCA 1 cut(s) 131
MseI TTAA 3 cut(s) 39, 168, 271
Msp20I TGGCCA 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 1 cut(s) 51
NlaIII CATG 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 244
PceI AGGCCT 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 11
Pfl23II CGTACG 1 cut(s) 59
PkrI GCNGC 2 cut(s) 49, 78
Ple19I CGATCG 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
PspLI CGTACG 1 cut(s) 59
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
PvuI CGATCG 1 cut(s) 54
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 3 cut(s) 39, 168, 271
SatI GCNGC 2 cut(s) 48, 77
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 89
SetI ASST 3 cut(s) 21, 91, 184
SfaNI GCATC 2 cut(s) 229, 251
SinI GGWCC 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 4 cut(s) 36, 99, 169, 194
SseBI AGGCCT 1 cut(s) 207
SspMI CTAG 1 cut(s) 146
StuI AGGCCT 1 cut(s) 207
TaiI ACGT 1 cut(s) 184
TasI AATT 4 cut(s) 36, 99, 169, 194
Tru1I TTAA 3 cut(s) 39, 168, 271
Tru9I TTAA 3 cut(s) 39, 168, 271
TseI GCWGC 2 cut(s) 47, 76
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.