Rmu_sc0013209.1_g000001

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013209.1
OG0000298
Physical Location & Seq
Forward (+)
1 .. 2315
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013209.1_g000001.1.cds

Sequence Viewer

Length: 924 bp
ttcaatgcttttctacatggagctcttcattgggctacgcagtattggactggtgatgaatttatgcattcattcaacttcgaaacagaaaagtttgaaacaatacccccacctagccactttgccccaaaagataaacttaaagagtggttgaccttgggagtgttagaaggttgtctcctgttatgtgtgtttgatgatgattctagcaaatttgaaatgtggattatgagagattatggtgtccaagactcttggacgaagatttttgttattgaaaacttgtacccaagaagatatcaacctgaagagtatggaccaattatgtttttgagtaatggtgaaattctaatgtcctatggtgttggtgctgtggtttgttataacccagaaacaaagagtttcaggaaaactagtattgctccgactgagtcagaatttgttgcagttgcctacagtccatcatttgtttcactctacgatattgcaaaaggagaggaggtggaaaggataagaaacaatgagaatttcaacaagctgtttactgaagggagtagtagtgctgctggttctggaacgtcagcccaccagtgcacaaatctaaacccaggctcttgcccacctggtgttgaagaggctctccctaaacctattattacaacttcctctgcaactagcaatgagcaagtggattttgctctgaggattgggagtaagtgcgctatatgtggtgggcaattgggttatgttttcagagttaaaagtggtgatgccatgaatcccctgctggttaaaacttataagccgtcattgctgatatgtgctgcctctactctgttctggtttgcatcatttgctgataagtgtctagtcgtttcctccacagacatggatcatctattggctacaactgcttggttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

307

Amino Acids

34.2

Weight (kDa)

5.05

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 384, 801
AclWI GGATC 1 cut(s) 900
AcsI RAATTY 5 cut(s) 59, 212, 345, 437, 526
AcuI CTGAAG 2 cut(s) 327, 567
AdeI CACNNNGTG 1 cut(s) 626
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 7 cut(s) 4, 76, 98, 218, 278, 532, 632
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 2 cut(s) 607, 622
AluBI AGCT 2 cut(s) 23, 538
AluI AGCT 2 cut(s) 23, 538
Alw21I GWGCWC 2 cut(s) 25, 596
Alw26I GTCTC 1 cut(s) 182
Alw44I GTGCAC 1 cut(s) 592
AlwI GGATC 1 cut(s) 900
ApaLI GTGCAC 1 cut(s) 592
ApeKI GCWGC 2 cut(s) 563, 824
ApoI RAATTY 5 cut(s) 59, 212, 345, 437, 526
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 65, 353, 779
AsuII TTCGAA 1 cut(s) 81
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 596
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 2 cut(s) 25, 596
BbvI GCAGC 2 cut(s) 550, 811
BccI CCATC 1 cut(s) 469
BceAI ACGGC 1 cut(s) 790
BciT130I CCWGG 2 cut(s) 609, 624
BcoDI GTCTC 1 cut(s) 182
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 5 cut(s) 114, 207, 414, 675, 869
BfmI CTRYAG 1 cut(s) 454
BisI GCNGC 2 cut(s) 564, 825
BlsI GCNGC 2 cut(s) 565, 826
Bme1390I CCNGG 2 cut(s) 609, 624
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmrFI CCNGG 2 cut(s) 609, 624
BmsI GCATC 2 cut(s) 760, 857
Bpu14I TTCGAA 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 156, 607
BsaXI ACNNNNNCTCC 4 cut(s) 486, 516, 544, 574
Bse1I ACTGG 2 cut(s) 55, 589
Bse3DI GCAATG 2 cut(s) 685, 809
BseBI CCWGG 2 cut(s) 609, 624
BseDI CCNNGG 2 cut(s) 156, 607
BseMI GCAATG 2 cut(s) 685, 809
BseMII CTCAG 2 cut(s) 420, 692
BseNI ACTGG 2 cut(s) 55, 589
BseRI GAGGAG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 2 cut(s) 550, 811
BsiHKAI GWGCWC 2 cut(s) 25, 596
BsmAI GTCTC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 67
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 25, 596
Bsp143I GATC 1 cut(s) 892
BspCNI CTCAG 2 cut(s) 421, 693
BspPI GGATC 1 cut(s) 900
BspQI GCTCTTC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 81
BsrDI GCAATG 2 cut(s) 685, 809
BsrI ACTGG 2 cut(s) 55, 589
BssECI CCNNGG 2 cut(s) 156, 607
BssMI GATC 1 cut(s) 892
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 609, 624
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 3 cut(s) 30, 303, 627
BstAPI GCANNNNNTGC 1 cut(s) 854
BstBI TTCGAA 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 429, 701
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 1 cut(s) 895
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 892
BstMWI GCNNNNNNNGC 3 cut(s) 811, 854, 911
BstNI CCWGG 2 cut(s) 609, 624
BstSCI CCNGG 2 cut(s) 607, 622
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 596
BstV1I GCAGC 2 cut(s) 550, 811
BstXI CCANNNNNNTGG 1 cut(s) 889
BtsIMutI CAGTG 1 cut(s) 596
CfoI GCGC 1 cut(s) 722
Cfr13I GGNCC 1 cut(s) 317
CsiI ACCWGGT 1 cut(s) 622
Csp6I GTAC 1 cut(s) 286
CviAII CATG 3 cut(s) 17, 775, 889
CviJI RGCY 9 cut(s) 23, 35, 117, 538, 584, 612, 638, 805, 905
CviKI_1 RGCY 9 cut(s) 23, 35, 117, 538, 584, 612, 638, 805, 905
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 429, 701
DpnI GATC 1 cut(s) 894
DpnII GATC 1 cut(s) 892
DraIII CACNNNGTG 1 cut(s) 626
Eam1104I CTCTTC 3 cut(s) 30, 303, 627
EarI CTCTTC 3 cut(s) 30, 303, 627
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 25
Eco32I GATATC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 2 cut(s) 327, 567
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 607, 622
EcoRV GATATC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 20, 778, 892
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 3 cut(s) 16, 774, 888
Fnu4HI GCNGC 2 cut(s) 564, 825
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 564, 825
FspBI CTAG 5 cut(s) 114, 207, 414, 675, 869
GlaI GCGC 1 cut(s) 721
GluI GCNGC 2 cut(s) 564, 825
HhaI GCGC 1 cut(s) 722
Hin1II CATG 3 cut(s) 20, 778, 892
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HinfI GANTC 4 cut(s) 203, 251, 431, 778
HphI GGTGA 3 cut(s) 65, 353, 779
Hpy166II GTNNAC 3 cut(s) 153, 543, 594
Hpy188I TCNGA 4 cut(s) 426, 436, 702, 755
Hpy188III TCNNGA 2 cut(s) 406, 573
Hpy8I GTNNAC 3 cut(s) 153, 543, 594
HpyAV CCTTC 2 cut(s) 164, 542
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 578
HpyCH4V TGCA 6 cut(s) 67, 446, 488, 594, 671, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 811, 854, 911
HpyF3I CTNAG 2 cut(s) 429, 701
HpySE526I ACGT 1 cut(s) 578
Hsp92II CATG 3 cut(s) 20, 778, 892
HspAI GCGC 1 cut(s) 720
Kzo9I GATC 1 cut(s) 892
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 20, 427
Lsp1109I GCAGC 2 cut(s) 550, 811
LweI GCATC 2 cut(s) 760, 857
MabI ACCWGGT 1 cut(s) 622
MaeI CTAG 5 cut(s) 114, 207, 414, 675, 869
MaeII ACGT 1 cut(s) 578
MalI GATC 1 cut(s) 894
MboI GATC 1 cut(s) 892
MboII GAAGA 5 cut(s) 17, 274, 306, 320, 644
MfeI CAATTG 1 cut(s) 737
MhlI GDGCHC 2 cut(s) 25, 596
MluCI AATT 7 cut(s) 59, 212, 321, 345, 437, 526, 737
MlyI GAGTC 2 cut(s) 245, 440
MmeI TCCRAC 1 cut(s) 449
MnlI CCTC 7 cut(s) 490, 493, 628, 676, 696, 838, 889
Mph1103I ATGCAT 1 cut(s) 69
MseI TTAA 3 cut(s) 141, 759, 792
MslI CAYNNNNRTG 1 cut(s) 887
MspR9I CCNGG 2 cut(s) 609, 624
MunI CAATTG 1 cut(s) 737
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 2 cut(s) 609, 624
MwoI GCNNNNNNNGC 3 cut(s) 811, 854, 911
NdeII GATC 1 cut(s) 892
NlaIII CATG 3 cut(s) 20, 778, 892
NsiI ATGCAT 1 cut(s) 69
NspV TTCGAA 1 cut(s) 81
PciSI GCTCTTC 1 cut(s) 30
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 203, 778
PflFI GACNNNGTC 1 cut(s) 430
PkrI GCNGC 2 cut(s) 565, 826
PleI GAGTC 2 cut(s) 245, 439
PpsI GAGTC 2 cut(s) 245, 439
PsiI TTATAA 2 cut(s) 384, 801
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 607, 622
PspGI CCWGG 2 cut(s) 607, 622
PspPI GGNCC 1 cut(s) 317
PsyI GACNNNGTC 1 cut(s) 430
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 887
SacI GAGCTC 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 3 cut(s) 141, 759, 792
SatI GCNGC 2 cut(s) 564, 825
Sau3AI GATC 1 cut(s) 892
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 2 cut(s) 245, 440
ScrFI CCNGG 2 cut(s) 609, 624
SduI GDGCHC 2 cut(s) 25, 596
SexAI ACCWGGT 1 cut(s) 622
SfaNI GCATC 2 cut(s) 760, 857
SfcI CTRYAG 1 cut(s) 454
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 887
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 7 cut(s) 59, 212, 321, 345, 437, 526, 737
SspMI CTAG 5 cut(s) 114, 207, 414, 675, 869
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 607, 622
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 581
TaqI TCGA 1 cut(s) 81
TasI AATT 7 cut(s) 59, 212, 321, 345, 437, 526, 737
TfiI GAWTC 2 cut(s) 203, 778
Tru1I TTAA 3 cut(s) 141, 759, 792
Tru9I TTAA 3 cut(s) 141, 759, 792
TscAI CASTG 1 cut(s) 596
TseI GCWGC 2 cut(s) 563, 824
TspDTI ATGAA 4 cut(s) 17, 60, 72, 791
TspRI CASTG 1 cut(s) 596
Tth111I GACNNNGTC 1 cut(s) 430
VneI GTGCAC 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 5 cut(s) 59, 212, 345, 437, 526
XspI CTAG 5 cut(s) 114, 207, 414, 675, 869
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.