MD13G1178000.v1.1

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000298
Physical Location & Seq
Reverse (-)
14850369 .. 14850989
621 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1178000.v1.1.491

Sequence Viewer

Length: 621 bp
ATGAGGTTTACCCCCAAAAATAGCCTGCCCATTTCCGATTTTAAGGTGATAAACTCGTGCAATGGTTTGCCTTGTTTGTCTGGACCTGGAAAATATGGTCCCTTGTATGTGTGCATGGGTGAGTACATCGCTTTTCCGCCTGCTAATAATGGTAGGCAGTCTGGAATGTTAGTTGGACTTGGTTTTAGAGCGGCGACGAATGAGTACAAGGTGTTCCAAACATTTTATCCAGAGTGTGAATCGTCCTCACCTGACAACTTATATGAGACTGACATATCCACCATTGGTACGGGAGTTTGGAGAAGCATTGAGAATGCACCTTGGGACTATGTTTGCTTATCATTCAATGCGTTTCTGCACGGAGCTCTTCACTGGGTTTCCGAGAGTACTAGGTATTCAGAGTTTATACGATCTTTCAGCTTTGAAAGAGAGCATTTTCAAATACCACCTGCACCTAGCTGCTTCACAAAATGGGAGAAGGAATTGGCAGATTGTTTGAAGTTGAGAGTGATAGGAGATTGTCTCTTCATATGCGTGTATGGTGACGATCCTAGACAATTTGACTGCATGATTTCTGCAGAGATTTGTCAACAATGCTTCGATGCAAAAGTCTTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

207

Amino Acids

23.33

Weight (kDa)

5.08

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 15 - 152 6e-06 F-box associated beta propeller domain
FBA_1 PF07734 38 - 154 1.6e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 457
Acc36I ACCTGC 1 cut(s) 457
AccBSI CCGCTC 1 cut(s) 191
AciI CCGC 2 cut(s) 137, 191
AclWI GGATC 1 cut(s) 542
AfaI GTAC 4 cut(s) 125, 206, 289, 388
AgsI TTSAA 4 cut(s) 346, 425, 440, 499
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 3 cut(s) 365, 420, 459
AluI AGCT 3 cut(s) 365, 420, 459
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 2 cut(s) 260, 527
AlwI GGATC 1 cut(s) 542
ApeKI GCWGC 1 cut(s) 459
AspS9I GGNCC 2 cut(s) 83, 98
AsuHPI GGTGA 4 cut(s) 58, 131, 240, 554
AvaII GGWCC 2 cut(s) 83, 98
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BanII GRGCYC 1 cut(s) 367
BauI CACGAG 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 260, 527
BfaI CTAG 3 cut(s) 390, 456, 552
BfmI CTRYAG 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 2 cut(s) 192, 460
BlsI GCNGC 2 cut(s) 193, 461
BmcAI AGTACT 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 2 cut(s) 83, 98
BmgT120I GGNCC 2 cut(s) 83, 98
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 87
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 592
BmuI ACTGGG 1 cut(s) 382
BplI GAGNNNNNCTC 2 cut(s) 507, 539
BsaJI CCNNGG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 320
BseMI GCAATG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 446
BsgI GTGCAG 2 cut(s) 341, 435
BsiHKAI GWGCWC 1 cut(s) 367
BslFI GGGAC 2 cut(s) 84, 338
BsmAI GTCTC 2 cut(s) 260, 527
BsmFI GGGAC 2 cut(s) 84, 338
BsmI GAATGC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 2 cut(s) 410, 547
BspACI CCGC 2 cut(s) 137, 191
BspLI GGNNCC 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 580
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 1 cut(s) 542
BspQI GCTCTTC 1 cut(s) 372
BsrBI CCGCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 2 cut(s) 410, 547
BssSI CACGAG 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 320
Bst2BI CACGAG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 372, 530
BstC8I GCNNGC 2 cut(s) 26, 141
BstKTI GATC 2 cut(s) 413, 550
BstMAI GTCTC 2 cut(s) 260, 527
BstMBI GATC 2 cut(s) 410, 547
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 1 cut(s) 446
BtgZI GCGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 370
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 26, 141
Cfr13I GGNCC 2 cut(s) 83, 98
Csp6I GTAC 4 cut(s) 124, 205, 288, 387
CviAII CATG 2 cut(s) 115, 568
CviJI RGCY 4 cut(s) 24, 365, 420, 459
CviKI_1 RGCY 4 cut(s) 24, 365, 420, 459
CviQI GTAC 4 cut(s) 124, 205, 288, 387
DpnI GATC 2 cut(s) 412, 549
DpnII GATC 2 cut(s) 410, 547
Eam1104I CTCTTC 2 cut(s) 372, 530
EarI CTCTTC 2 cut(s) 372, 530
EciI GGCGGA 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 2 cut(s) 83, 98
Eco53kI GAGCTC 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 2 cut(s) 118, 571
FaqI GGGAC 2 cut(s) 84, 338
FatI CATG 2 cut(s) 114, 567
FauNDI CATATG 1 cut(s) 530
Fnu4HI GCNGC 2 cut(s) 192, 460
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 2 cut(s) 192, 460
FspBI CTAG 3 cut(s) 390, 456, 552
GluI GCNGC 2 cut(s) 192, 460
Hin1II CATG 2 cut(s) 118, 571
HincII GTYRAC 1 cut(s) 590
HindII GTYRAC 1 cut(s) 590
HinfI GANTC 1 cut(s) 239
HphI GGTGA 4 cut(s) 58, 131, 240, 554
Hpy166II GTNNAC 2 cut(s) 9, 590
Hpy188I TCNGA 3 cut(s) 37, 382, 400
Hpy188III TCNNGA 3 cut(s) 81, 162, 230
Hpy8I GTNNAC 2 cut(s) 9, 590
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 472
HpyCH4V TGCA 8 cut(s) 60, 114, 317, 358, 452, 567, 578, 605
Hsp92II CATG 2 cut(s) 118, 571
Kzo9I GATC 2 cut(s) 410, 547
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 362
Lsp1109I GCAGC 1 cut(s) 446
LweI GCATC 1 cut(s) 592
MaeI CTAG 3 cut(s) 390, 456, 552
MaeIII GTNAC 1 cut(s) 542
MalI GATC 2 cut(s) 412, 549
MbiI CCGCTC 1 cut(s) 191
MboI GATC 2 cut(s) 410, 547
MboII GAAGA 2 cut(s) 359, 517
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 2 cut(s) 482, 557
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 1 cut(s) 256
MseI TTAA 2 cut(s) 42, 615
MslI CAYNNNNRTG 1 cut(s) 533
MspR9I CCNGG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 87
NdeI CATATG 1 cut(s) 530
NdeII GATC 2 cut(s) 410, 547
NlaIII CATG 2 cut(s) 118, 571
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 542
PaqCI CACCTGC 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 372
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 193, 461
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 83, 98
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PstI CTGCAG 1 cut(s) 580
RsaI GTAC 4 cut(s) 125, 206, 289, 388
RsaNI GTAC 4 cut(s) 124, 205, 288, 387
RseI CAYNNNNRTG 1 cut(s) 533
SacI GAGCTC 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 42, 615
SatI GCNGC 2 cut(s) 192, 460
Sau3AI GATC 2 cut(s) 410, 547
Sau96I GGNCC 2 cut(s) 83, 98
ScaI AGTACT 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 1 cut(s) 592
SfcI CTRYAG 1 cut(s) 576
SinI GGWCC 2 cut(s) 83, 98
SmiMI CAYNNNNRTG 1 cut(s) 533
Sse9I AATT 2 cut(s) 482, 557
SsiI CCGC 2 cut(s) 137, 191
SspMI CTAG 3 cut(s) 390, 456, 552
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 1 cut(s) 320
TaqI TCGA 1 cut(s) 600
TasI AATT 2 cut(s) 482, 557
TatI WGTACW 3 cut(s) 123, 204, 386
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 42, 615
Tru9I TTAA 2 cut(s) 42, 615
TscAI CASTG 1 cut(s) 377
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 1 cut(s) 459
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 1 cut(s) 517
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 83, 98
XspI CTAG 3 cut(s) 390, 456, 552
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.