Rmu_sc0017785.1_g000004

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017785.1
OG0000298
Physical Location & Seq
Reverse (-)
12220 .. 13216
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017785.1_g000004.1.cds

Sequence Viewer

Length: 567 bp
atgccgattgcaaagagaaaccaaggcgaccgctcaggggattatccaaggcaacccgaagcaccaccgatcatccaagagaaatgggaacctgacggaccttgcataatccaacaccttcaaaatgacttactcattgagattctgtcatggctcccggtgaagaccatctggaattattggcgtaattatacaaataacagtcaggctcaagtttacactatcggctcaggagtttggaggagcattggaaatgctcctactgacaaggctatattaccctttaattcttttctgcatggagctattcattttgctcccatcgattctagtttcgatttcgaaagagaacagtttcaagcactgccgccaccctcaagtgatcagttgaagttgaagtctaacagaggtggtataagtttgggagtgtgggagagtcgtctctcatattgtgtgtttgatgtacatgctaccaagtttgacttgtggattatgaaggagtatggggtgcaggattcttggataaaagctattgtggttgaaaacatgtttccaaattccaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

188

Amino Acids

21.55

Weight (kDa)

5.78

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 2 cut(s) 31, 368
AcsI RAATTY 1 cut(s) 556
AfaI GTAC 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 5 cut(s) 122, 359, 391, 397, 542
AluBI AGCT 2 cut(s) 305, 530
AluI AGCT 2 cut(s) 305, 530
Alw26I GTCTC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 556
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 172
AsuII TTCGAA 1 cut(s) 342
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 170
BccI CCATC 2 cut(s) 176, 329
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 1 cut(s) 330
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 90, 155
BmrFI CCNGG 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 170
Bpu10I CCTNAGC 2 cut(s) 34, 229
Bpu14I TTCGAA 1 cut(s) 342
BpuEI CTTGAG 2 cut(s) 195, 361
BpuMI CCSGG 1 cut(s) 158
Bsa29I ATCGAT 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 22, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 22, 47
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 48, 243
BseRI GAGGAG 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 530
Bsh1285I CGRYCG 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 446
BsmBI CGTCTC 1 cut(s) 446
Bsp119I TTCGAA 1 cut(s) 342
Bsp1407I TGTACA 1 cut(s) 463
Bsp143I GATC 2 cut(s) 69, 382
BspACI CCGC 2 cut(s) 31, 368
BspCNI CTCAG 2 cut(s) 47, 242
BspDI ATCGAT 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 90, 155
BspT104I TTCGAA 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 33
BsrGI TGTACA 1 cut(s) 463
BssECI CCNNGG 2 cut(s) 22, 47
BssMI GATC 2 cut(s) 69, 382
BssT1I CCWWGG 2 cut(s) 22, 47
Bst4CI ACNGT 2 cut(s) 203, 354
BstAUI TGTACA 1 cut(s) 463
BstBI TTCGAA 1 cut(s) 342
BstDEI CTNAG 2 cut(s) 34, 229
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 2 cut(s) 72, 385
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 2 cut(s) 69, 382
BstMCI CGRYCG 1 cut(s) 31
BstNSI RCATGY 2 cut(s) 470, 550
BstSCI CCNGG 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 324
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 324
Csp6I GTAC 1 cut(s) 464
CviAII CATG 4 cut(s) 150, 299, 467, 547
CviJI RGCY 6 cut(s) 154, 209, 228, 272, 305, 530
CviKI_1 RGCY 6 cut(s) 154, 209, 228, 272, 305, 530
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 2 cut(s) 34, 229
DpnI GATC 2 cut(s) 71, 384
DpnII GATC 2 cut(s) 69, 382
Eco130I CCWWGG 2 cut(s) 22, 47
Eco47I GGWCC 1 cut(s) 98
EcoT14I CCWWGG 2 cut(s) 22, 47
ErhI CCWWGG 2 cut(s) 22, 47
Esp3I CGTCTC 1 cut(s) 446
FaeI CATG 4 cut(s) 153, 302, 470, 550
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FatI CATG 4 cut(s) 149, 298, 466, 546
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 368
HapII CCGG 1 cut(s) 158
Hin1II CATG 4 cut(s) 153, 302, 470, 550
HinfI GANTC 4 cut(s) 142, 326, 436, 515
HpaII CCGG 1 cut(s) 158
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 2 cut(s) 172, 231
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 128, 490
HpyCH4III ACNGT 2 cut(s) 203, 354
HpyCH4V TGCA 4 cut(s) 11, 105, 298, 511
HpyF3I CTNAG 2 cut(s) 34, 229
Hsp92II CATG 4 cut(s) 153, 302, 470, 550
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 2 cut(s) 69, 382
LmnI GCTCC 5 cut(s) 159, 243, 262, 302, 322
LpnPI CCDG 7 cut(s) 21, 105, 157, 171, 191, 216, 497
MaeI CTAG 1 cut(s) 330
MalI GATC 2 cut(s) 71, 384
MbiI CCGCTC 1 cut(s) 33
MboI GATC 2 cut(s) 69, 382
MboII GAAGA 1 cut(s) 175
MluCI AATT 4 cut(s) 175, 187, 286, 556
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 3 cut(s) 234, 385, 401
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 1 cut(s) 285
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 158
NciI CCSGG 1 cut(s) 158
NdeII GATC 2 cut(s) 69, 382
NlaIII CATG 4 cut(s) 153, 302, 470, 550
NlaIV GGNNCC 2 cut(s) 90, 155
NspI RCATGY 2 cut(s) 470, 550
NspV TTCGAA 1 cut(s) 342
PciI ACATGT 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 3 cut(s) 142, 326, 515
PkrI GCNGC 1 cut(s) 369
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
PscI ACATGT 1 cut(s) 546
PspN4I GGNNCC 2 cut(s) 90, 155
PspPI GGNCC 1 cut(s) 98
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 2 cut(s) 69, 382
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 158
SetI ASST 6 cut(s) 94, 103, 120, 307, 412, 532
SfuI TTCGAA 1 cut(s) 342
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 2 cut(s) 210, 376
SmoI CTYRAG 2 cut(s) 210, 376
Sse9I AATT 4 cut(s) 175, 187, 286, 556
SsiI CCGC 2 cut(s) 31, 368
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 2 cut(s) 22, 47
TaaI ACNGT 2 cut(s) 203, 354
TaqI TCGA 3 cut(s) 324, 336, 342
TasI AATT 4 cut(s) 175, 187, 286, 556
TatI WGTACW 1 cut(s) 463
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 3 cut(s) 142, 326, 515
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 369
TspDTI ATGAA 2 cut(s) 299, 509
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 556
XceI RCATGY 2 cut(s) 470, 550
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.