Rorug04G0161300

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000298
Physical Location & Seq
Forward (+)
28052103 .. 28055203
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0161300.1

Sequence Viewer

Length: 618 bp
ATGGCTGCTTCTGGTTCCAAGAACAACCACCCTCCTCCCTCTTCTTCCAAGCCTCCCAAGAACCAAATCGTCATCGCCGACCCACAAATCCCAAACCCCGGCCCCTCCACCTCCGCCATCACTCCTTCCCGTGAAGACGTGGTCCTCTCAAGCGCCTCCCACCTCACGCGCCAAGAGCTCCTCCGCCGCCGCTCCCACAACCTCAAGGAGCTGACGAAATGCTACAAAGACCACTACTGGGGGTTCATGGAGCACCTCAAGATCCAGTACAGGGAGTACTACTGGAAGTACGGTGTCAGCCCTTTCAAAGAAGACAACAACGCCACCACCACCAATAACAACAACAACAATGGAGTCGCTGCTGTTGAAGGCAGTGATGACAACCACAATAACAATCGCCGCTGCGCTTCCGTCGGCTGTAAGTTGAAGGCCATGGCCTTAACCAGCTTCTGCCACCTCCACATTCTTTCGGATTCGAAGCAGAGGCTCTACAAGGCTTGCAATTATGTTATCAAGAGGAGTATGATATTATGTGTATTTGAGTGTTGGACTTTGTTTTTATTCATGATGGACATTGAAGAAACATATGATCATGTCAGTAGGATTTTGAGACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

205

Amino Acids

23.51

Weight (kDa)

9.05

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 135 - 178 4.4e-11 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 1 cut(s) 169
AciI CCGC 5 cut(s) 114, 184, 187, 190, 400
AclWI GGATC 1 cut(s) 256
AfaI GTAC 3 cut(s) 269, 278, 290
AfiI CCNNNNNNNGG 3 cut(s) 98, 238, 271
AgsI TTSAA 4 cut(s) 307, 368, 427, 578
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 3 cut(s) 178, 211, 447
AluI AGCT 3 cut(s) 178, 211, 447
Alw21I GWGCWC 2 cut(s) 180, 255
Alw26I GTCTC 1 cut(s) 604
AlwI GGATC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 450
AoxI GGCC 3 cut(s) 100, 429, 435
ApeKI GCWGC 3 cut(s) 5, 359, 402
AspLEI GCGC 3 cut(s) 155, 171, 407
AspS9I GGNCC 2 cut(s) 101, 142
AsuC2I CCSGG 1 cut(s) 99
AsuII TTCGAA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 2 cut(s) 141, 318
Bbv12I GWGCWC 2 cut(s) 180, 255
BbvI GCAGC 2 cut(s) 346, 389
BccI CCATC 2 cut(s) 125, 562
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 1 cut(s) 616
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 6 cut(s) 6, 187, 190, 360, 400, 403
BlsI GCNGC 6 cut(s) 7, 188, 191, 361, 401, 404
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 101, 142
BmiI GGNNCC 2 cut(s) 16, 103
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 247
BpiI GAAGAC 2 cut(s) 141, 318
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 3 cut(s) 133, 188, 242
BpuMI CCSGG 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 97, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 238, 271
Bse1I ACTGG 3 cut(s) 242, 265, 287
BseDI CCNNGG 2 cut(s) 97, 432
BseLI CCNNNNNNNGG 3 cut(s) 98, 238, 271
BseNI ACTGG 3 cut(s) 242, 265, 287
BseRI GAGGAG 3 cut(s) 24, 170, 532
BseXI GCAGC 2 cut(s) 346, 389
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 3 cut(s) 102, 431, 437
BsiHKAI GWGCWC 2 cut(s) 180, 255
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 98, 238, 271
BsmAI GTCTC 1 cut(s) 604
BsnI GGCC 3 cut(s) 102, 431, 437
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 180, 255
Bsp143I GATC 2 cut(s) 261, 589
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 5 cut(s) 114, 184, 187, 190, 400
BspANI GGCC 3 cut(s) 102, 431, 437
BspFNI CGCG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 2 cut(s) 16, 103
BspPI GGATC 1 cut(s) 256
BspT104I TTCGAA 1 cut(s) 476
BsrBI CCGCTC 1 cut(s) 192
BsrI ACTGG 3 cut(s) 242, 265, 287
BssECI CCNNGG 2 cut(s) 97, 432
BssMI GATC 2 cut(s) 261, 589
BssT1I CCWWGG 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 499
BstDSI CCRYGG 1 cut(s) 432
BstFNI CGCG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 3 cut(s) 155, 171, 407
BstKTI GATC 2 cut(s) 264, 592
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 2 cut(s) 261, 589
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 97
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 346, 389
BstV2I GAAGAC 2 cut(s) 141, 318
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 3 cut(s) 102, 431, 437
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 499
CaiI CAGNNNCTG 1 cut(s) 450
CciI TCATGA 1 cut(s) 564
CfoI GCGC 3 cut(s) 155, 171, 407
Cfr13I GGNCC 2 cut(s) 101, 142
Csp6I GTAC 3 cut(s) 268, 277, 289
CviAII CATG 4 cut(s) 247, 433, 565, 593
CviQI GTAC 3 cut(s) 268, 277, 289
DpnI GATC 2 cut(s) 263, 591
DpnII GATC 2 cut(s) 261, 589
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
EciI GGCGGA 2 cut(s) 103, 173
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 4 cut(s) 250, 436, 568, 596
FaiI YATR 9 cut(s) 248, 434, 507, 524, 532, 566, 586, 588, 594
FatI CATG 4 cut(s) 246, 432, 564, 592
FauNDI CATATG 1 cut(s) 586
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 6 cut(s) 6, 187, 190, 360, 400, 403
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 6 cut(s) 6, 187, 190, 360, 400, 403
FspBI CTAG 1 cut(s) 616
GlaI GCGC 3 cut(s) 154, 170, 406
GluI GCNGC 6 cut(s) 6, 187, 190, 360, 400, 403
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 3 cut(s) 102, 431, 437
HapII CCGG 1 cut(s) 99
HhaI GCGC 3 cut(s) 155, 171, 407
Hin1II CATG 4 cut(s) 250, 436, 568, 596
Hin6I GCGC 3 cut(s) 153, 169, 405
HinP1I GCGC 3 cut(s) 153, 169, 405
HinfI GANTC 2 cut(s) 354, 473
HpaII CCGG 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 3 cut(s) 259, 514, 565
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 3 cut(s) 135, 362, 421
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 501
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 4 cut(s) 250, 436, 568, 596
HspAI GCGC 3 cut(s) 153, 169, 405
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 2 cut(s) 261, 589
LmnI GCTCC 4 cut(s) 183, 197, 208, 250
LpnPI CCDG 6 cut(s) 112, 223, 256, 268, 278, 457
Lsp1109I GCAGC 2 cut(s) 346, 389
MaeI CTAG 1 cut(s) 616
MaeII ACGT 1 cut(s) 138
MalI GATC 2 cut(s) 263, 591
MbiI CCGCTC 1 cut(s) 192
MboI GATC 2 cut(s) 261, 589
MboII GAAGA 5 cut(s) 33, 36, 146, 323, 590
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 2 cut(s) 180, 255
MluCI AATT 1 cut(s) 502
MlyI GAGTC 1 cut(s) 363
MmeI TCCRAC 1 cut(s) 527
MseI TTAA 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 402
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 432
NdeI CATATG 1 cut(s) 586
NdeII GATC 2 cut(s) 261, 589
NlaIII CATG 4 cut(s) 250, 436, 568, 596
NlaIV GGNNCC 2 cut(s) 16, 103
NspV TTCGAA 1 cut(s) 476
PagI TCATGA 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 473
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 6 cut(s) 7, 188, 191, 361, 401, 404
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 16, 103
PspPI GGNCC 2 cut(s) 101, 142
PstNI CAGNNNCTG 1 cut(s) 450
PsuI RGATCY 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 3 cut(s) 269, 278, 290
RsaNI GTAC 3 cut(s) 268, 277, 289
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 6 cut(s) 6, 187, 190, 360, 400, 403
Sau3AI GATC 2 cut(s) 261, 589
Sau96I GGNCC 2 cut(s) 101, 142
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 2 cut(s) 180, 255
SetI ASST 9 cut(s) 113, 141, 165, 180, 204, 213, 258, 449, 459
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 3 cut(s) 148, 203, 257
SmoI CTYRAG 3 cut(s) 148, 203, 257
Sse9I AATT 1 cut(s) 502
SsiI CCGC 5 cut(s) 114, 184, 187, 190, 400
SspMI CTAG 1 cut(s) 616
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 476
TasI AATT 1 cut(s) 502
TatI WGTACW 2 cut(s) 267, 276
TauI GCSGC 3 cut(s) 189, 192, 402
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 1 cut(s) 379
TseI GCWGC 3 cut(s) 5, 359, 402
TspDTI ATGAA 2 cut(s) 235, 553
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 1 cut(s) 379
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 142
XspI CTAG 1 cut(s) 616
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.