Rw5G040160

F-box protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
70846460 .. 70854007
7548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G040160.1

Sequence Viewer

Length: 567 bp
ATGGGAACAGGAGTTTGGGGAAGCATTGGATTTGTTCCCAATTGCGGGAGTAGTCGCAAGGCATCATTTGATGCTCATTTGCATGGAGCTCTTAATTGGGTTTCCTTTTGGAGTAAGAGCATATTATTATTGAAAACCCTAAAATCAAAGTATTCTTTTCTACTCATTGGGCTGATACAGAAGCAGTATACAGATACTTTGAAGTTGGGAGTGTTAAGAAATTGTCTCATTTTATCTGTGATTATGGTATCCAAGAGTCTTGGACTAGAAGTGTTGTTATTGAAAACTTCTTTCCAATGGAACTTAGCTTTGATTGTTATGAACCTATTATCCTTGAGCAATGGGGAAATTCTGATGTTCAATGATGATGATCCTCGGGTCGTAGTTTGTTATAATCCAGAAGCAAAGAGTTTCAGGGAAGCTAGAATTAATAATCTTACAAAACATGTCATTGCCTTGCCATTGATTCAACTTGCTTACCGTCCATCCTTTGTTTCGCTCTATGATGTTTCAAAAAGAGAGGAGGTGAAAAGGTACTATATAAAACTCTACATAAAGATGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

21.38

Weight (kDa)

9.68

Isoelectric Point (pI)

22.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AccI GTMKAC 1 cut(s) 188
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 365
AcsI RAATTY 1 cut(s) 348
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 2 cut(s) 44, 45
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 6 cut(s) 133, 202, 283, 361, 470, 513
AjuI GAANNNNNNNTTGG 1 cut(s) 30
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 3 cut(s) 89, 308, 422
AluI AGCT 3 cut(s) 89, 308, 422
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 375
ApoI RAATTY 1 cut(s) 348
AseI ATTAAT 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 538
AvaI CYCGRG 1 cut(s) 375
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 1 cut(s) 493
BciVI GTATCC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 2 cut(s) 266, 423
BfuI GTATCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 375
BmsI GCATC 2 cut(s) 61, 71
BpuEI CTTGAG 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 374
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 45
Bse3DI GCAATG 2 cut(s) 346, 450
Bse8I GATNNNNATC 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 485
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 44, 45
BseMI GCAATG 2 cut(s) 346, 450
BseRI GAGGAG 1 cut(s) 536
BsiHKAI GWGCWC 1 cut(s) 91
BsiHKCI CYCGRG 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 44, 45
BsmAI GTCTC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 370
BspACI CCGC 1 cut(s) 45
BspPI GGATC 1 cut(s) 365
BsrDI GCAATG 2 cut(s) 346, 450
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 1 cut(s) 370
BssNAI GTATAC 1 cut(s) 189
Bst1107I GTATAC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 482
BstDEI CTNAG 1 cut(s) 304
BstF5I GGATG 1 cut(s) 485
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 370
BstNSI RCATGY 1 cut(s) 449
BstZ17I GTATAC 1 cut(s) 189
BsuI GTATCC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 485
Csp6I GTAC 1 cut(s) 535
CviAII CATG 2 cut(s) 83, 446
CviJI RGCY 4 cut(s) 89, 172, 308, 422
CviKI_1 RGCY 4 cut(s) 89, 172, 308, 422
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 1 cut(s) 304
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Ecl136II GAGCTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 2 cut(s) 86, 449
FatI CATG 2 cut(s) 82, 445
FauI CCCGC 1 cut(s) 38
FblI GTMKAC 1 cut(s) 188
FokI GGATG 1 cut(s) 472
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 2 cut(s) 266, 423
Hin1II CATG 2 cut(s) 86, 449
HinfI GANTC 2 cut(s) 256, 466
HphI GGTGA 1 cut(s) 538
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 1 cut(s) 189
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 304
Hsp92II CATG 2 cut(s) 86, 449
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 2 cut(s) 400, 411
LweI GCATC 2 cut(s) 61, 71
MaeI CTAG 2 cut(s) 266, 423
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MfeI CAATTG 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 5 cut(s) 40, 94, 220, 348, 426
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 3 cut(s) 384, 514, 517
MseI TTAA 3 cut(s) 93, 215, 429
MslI CAYNNNNRTG 2 cut(s) 81, 557
MunI CAATTG 1 cut(s) 40
NdeII GATC 1 cut(s) 370
NlaIII CATG 2 cut(s) 86, 449
NspI RCATGY 1 cut(s) 449
PciI ACATGT 1 cut(s) 445
PfeI GAWTC 1 cut(s) 466
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PscI ACATGT 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 429
PsiI TTATAA 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 91
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
RseI CAYNNNNRTG 2 cut(s) 81, 557
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 3 cut(s) 93, 215, 429
Sau3AI GATC 1 cut(s) 370
SchI GAGTC 1 cut(s) 265
SduI GDGCHC 1 cut(s) 91
SetI ASST 6 cut(s) 91, 310, 327, 424, 528, 536
SfaNI GCATC 2 cut(s) 61, 71
SmiMI CAYNNNNRTG 2 cut(s) 81, 557
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 5 cut(s) 40, 94, 220, 348, 426
SsiI CCGC 1 cut(s) 45
SspMI CTAG 2 cut(s) 266, 423
SstI GAGCTC 1 cut(s) 91
TaaI ACNGT 1 cut(s) 482
TasI AATT 5 cut(s) 40, 94, 220, 348, 426
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 3 cut(s) 93, 215, 429
Tru9I TTAA 3 cut(s) 93, 215, 429
TspDTI ATGAA 1 cut(s) 335
VspI ATTAAT 1 cut(s) 429
XapI RAATTY 1 cut(s) 348
XceI RCATGY 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 2 cut(s) 266, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.