RchiOBHm_Chr4g0419621

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Reverse (-)
45107205 .. 45109975
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38949

Sequence Viewer

Length: 615 bp
ATGGTACCGTTCAATTCTTTTCTGCATGGAGCTCTTCATTGGGTTCCCTACTCTTTTGACGGTTCTCAGTTTATACAGTCTTTCAACTTTGAGGCAGAACAATTTCGACCACTTGCCCCACCATTCAAAGGTCATTTGAAGTTATCCCAACATTATAATCATCTGAAGTTGGGAGTTTTAAAAGGTTGTCTCTTCTTATGTGTGCTTGGTGCTCATAATAGTGAATTTGACATGTGGGTTATGAAGGATTATGGTGTCCAAGAGTCTTGGACAAAAATTCTTGTCATTGAAAACTTGTTTCCATGGGTTGGCCATGTCCTGCATAATGCATATGAACCCATTGTGTTCTTCAATGATGGGGAAATCCTAATGACATACAAGGACCGGGTGGTGGTTCGTTATAATCAAGAAACAAAGACTGTCTCACGAACTGGGATAATTCAAACTCAGTCTCGATTTCGTGCAATTGCATACTGCCCTTGCTTTGTTTCACTCCCTGATGTTTCAAATGGAGAGGAGGTAATAAGGGTGAGAGACAATAACAAATTTGAAGAGATGTTTGCTAAAGGGAGCTATAATTGTGCAGGTTCCAGCAAGTCAGCTGATCATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

204

Amino Acids

23.48

Weight (kDa)

7.11

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 7 - 154 3.8e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 156, 402
Acc36I ACCTGC 1 cut(s) 575
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 3 cut(s) 224, 276, 545
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 3 cut(s) 128, 308, 391
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 9 cut(s) 13, 85, 127, 139, 290, 352, 443, 507, 551
AluBI AGCT 3 cut(s) 32, 573, 602
AluI AGCT 3 cut(s) 32, 573, 602
Alw21I GWGCWC 2 cut(s) 34, 214
Alw26I GTCTC 4 cut(s) 194, 427, 456, 528
AoxI GGCC 1 cut(s) 310
ApoI RAATTY 3 cut(s) 224, 276, 545
Asp700I GAANNNNTTC 1 cut(s) 102
Asp718I GGTACC 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 382
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 541
AvaII GGWCC 1 cut(s) 382
BalI TGGCCA 1 cut(s) 312
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 34
Bbv12I GWGCWC 2 cut(s) 34, 214
BccI CCATC 1 cut(s) 350
BclI TGATCA 1 cut(s) 604
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 4 cut(s) 194, 427, 456, 528
BfuAI ACCTGC 1 cut(s) 575
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 3 cut(s) 6, 45, 589
BmrFI CCNGG 1 cut(s) 386
BmrI ACTGGG 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 441
BpuMI CCSGG 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 308, 391
Bse1I ACTGG 1 cut(s) 436
BseDI CCNNGG 1 cut(s) 302
BseLI CCNNNNNNNGG 3 cut(s) 128, 308, 391
BseMII CTCAG 2 cut(s) 80, 461
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 530
BsgI GTGCAG 1 cut(s) 603
BshFI GGCC 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 34, 214
BsiSI CCGG 1 cut(s) 385
BslI CCNNNNNNNGG 3 cut(s) 128, 308, 391
BsmAI GTCTC 4 cut(s) 194, 427, 456, 528
BsnI GGCC 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 34, 214
Bsp143I GATC 1 cut(s) 604
Bsp19I CCATGG 1 cut(s) 302
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 79, 460
BspLI GGNNCC 3 cut(s) 6, 45, 589
BspMI ACCTGC 1 cut(s) 575
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 1 cut(s) 604
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 4 cut(s) 9, 62, 78, 421
Bst6I CTCTTC 3 cut(s) 39, 197, 546
BstDEI CTNAG 2 cut(s) 66, 447
BstDSI CCRYGG 1 cut(s) 302
BstKTI GATC 1 cut(s) 607
BstMAI GTCTC 4 cut(s) 194, 427, 456, 528
BstMBI GATC 1 cut(s) 604
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 384
BsuRI GGCC 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 302
BveI ACCTGC 1 cut(s) 575
Cfr13I GGNCC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 5
CviAII CATG 4 cut(s) 26, 232, 303, 314
CviJI RGCY 4 cut(s) 32, 312, 573, 602
CviKI_1 RGCY 4 cut(s) 32, 312, 573, 602
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 2 cut(s) 66, 447
DpnI GATC 1 cut(s) 606
DpnII GATC 1 cut(s) 604
DraI TTTAAA 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 3 cut(s) 39, 197, 546
EarI CTCTTC 3 cut(s) 39, 197, 546
Ecl136II GAGCTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 302
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 4 cut(s) 29, 235, 306, 317
FatI CATG 4 cut(s) 25, 231, 302, 313
FauNDI CATATG 1 cut(s) 331
FbaI TGATCA 1 cut(s) 604
FriOI GRGCYC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 312
HapII CCGG 1 cut(s) 385
Hin1II CATG 4 cut(s) 29, 235, 306, 317
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 385
HphI GGTGA 1 cut(s) 541
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 3 cut(s) 407, 426, 453
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 4 cut(s) 9, 62, 78, 421
HpyCH4V TGCA 6 cut(s) 25, 322, 329, 464, 470, 584
HpyF3I CTNAG 2 cut(s) 66, 447
Hsp92II CATG 4 cut(s) 29, 235, 306, 317
KpnI GGTACC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 1 cut(s) 604
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 29, 570
LpnPI CCDG 6 cut(s) 332, 398, 417, 510, 570, 604
MalI GATC 1 cut(s) 606
MboI GATC 1 cut(s) 604
MboII GAAGA 4 cut(s) 26, 184, 340, 563
MfeI CAATTG 1 cut(s) 465
MhlI GDGCHC 2 cut(s) 34, 214
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 8 cut(s) 13, 101, 224, 276, 438, 465, 545, 577
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 3 cut(s) 85, 508, 511
Mox20I TGGCCA 1 cut(s) 312
Mph1103I ATGCAT 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 102
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 1 cut(s) 385
MspR9I CCNGG 1 cut(s) 386
MunI CAATTG 1 cut(s) 465
NciI CCSGG 1 cut(s) 386
NcoI CCATGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 331
NdeII GATC 1 cut(s) 604
NlaIII CATG 4 cut(s) 29, 235, 306, 317
NlaIV GGNNCC 3 cut(s) 6, 45, 589
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 1 cut(s) 235
PciI ACATGT 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 308
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PscI ACATGT 1 cut(s) 231
PsiI TTATAA 2 cut(s) 156, 402
Psp124BI GAGCTC 1 cut(s) 34
PspN4I GGNNCC 3 cut(s) 6, 45, 589
PspPI GGNCC 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 602
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 219
SacI GAGCTC 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 179
Sau3AI GATC 1 cut(s) 604
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 2 cut(s) 34, 214
SetI ASST 7 cut(s) 34, 133, 187, 522, 575, 589, 604
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 8 cut(s) 13, 101, 224, 276, 438, 465, 545, 577
SstI GAGCTC 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 4 cut(s) 9, 62, 78, 421
TaqI TCGA 2 cut(s) 106, 454
TasI AATT 8 cut(s) 13, 101, 224, 276, 438, 465, 545, 577
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 26, 257, 348
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 3 cut(s) 224, 276, 545
XceI RCATGY 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.