Rw4G019190

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000298
Physical Location & Seq
Forward (+)
42400058 .. 42400817
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019190.1

Sequence Viewer

Length: 681 bp
ATGAGACGAAGGAAAAGAGTAGCGAACATGTCACCAATCAACACGGAAGAACAAGAAGAATGGCAACCCAAAGGTCCCTGCAGATTCCAACAGCTTCCACAGGCTTTAGTCATAGACATTCTCTCAAGGCTCTTGGTCAAGACCCTCTTCAACTGCAGGTGCATATGCAAATCTTGGCTTTCCATTATTTCCGACCCTCATTTTTCCCACATGCGCCTTTCGAAAGATGGCCCATTGTATGTGTGTAATCCAATTTTAGGTGAATTCATCACTCTTCCACCTACTGATGGGAGGAGGCTATGCTATAGCTTTTTCGGACTTGGTTATAGTGTTGCAACTAAGGAATATTACAAGGTGCTGCAAACATGCAGCGGCGACGACCGCACCAATGAGAATGAGGCTCAGATATACACAATTGGTTCAGGAGTTTGGAAAAGCATTGGGAAAACTCCTCAGGACTCTGCCCAGTTAGCACCATTCAATGCTGTTCTGCATGGAGCTCTTCATTGGCTTTCCTTTGGTGGAAGAACATTTGAGTTCATACATGCATTTAACTTTGGAACAGAACAGTTCGGCACACTACCCCCACCTGGTTACTTTGAACCATTTGAGAAGCTATTTAAAGAATATTATGAAGGATTATGGTGTCCAAGAGTCTTGGACGAAAACTCTGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

226

Amino Acids

25.87

Weight (kDa)

7.54

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 29 - 67 1.2e-07 F-box-like
F-box PF00646 30 - 68 8.4e-08 F-box domain
FBA_3 PF08268 75 - 197 3.1e-11 F-box associated beta propeller domain
FBA_1 PF07734 76 - 197 4.7e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AciI CCGC 2 cut(s) 372, 382
AcsI RAATTY 1 cut(s) 263
AfiI CCNNNNNNNGG 3 cut(s) 257, 287, 590
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 3 cut(s) 151, 481, 602
AjnI CCWGG 1 cut(s) 589
AluBI AGCT 4 cut(s) 94, 309, 500, 616
AluI AGCT 4 cut(s) 94, 309, 500, 616
Alw21I GWGCWC 1 cut(s) 502
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 358, 369
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 74, 230
AsuHPI GGTGA 2 cut(s) 24, 272
AsuII TTCGAA 1 cut(s) 221
AvaII GGWCC 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 453
BanII GRGCYC 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 2 cut(s) 345, 381
BccI CCATC 2 cut(s) 221, 281
BciT130I CCWGG 1 cut(s) 591
BfmI CTRYAG 3 cut(s) 79, 154, 304
BfuAI ACCTGC 1 cut(s) 147
BisI GCNGC 3 cut(s) 359, 370, 373
BlsI GCNGC 3 cut(s) 360, 371, 374
Bme1390I CCNGG 1 cut(s) 591
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 74, 230
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 591
BmrI ACTGGG 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 460
Bpu14I TTCGAA 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 287, 590
Bse1I ACTGG 1 cut(s) 466
Bse21I CCTNAGG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 591
BseLI CCNNNNNNNGG 3 cut(s) 257, 287, 590
BseMII CTCAG 2 cut(s) 416, 467
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 2 cut(s) 307, 441
BseXI GCAGC 2 cut(s) 345, 381
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 1 cut(s) 231
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 502
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 3 cut(s) 257, 287, 590
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 502
BspACI CCGC 2 cut(s) 372, 382
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 2 cut(s) 415, 466
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 2 cut(s) 83, 158
BspMI ACCTGC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 507
BspT104I TTCGAA 1 cut(s) 221
BsrI ACTGG 1 cut(s) 466
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 1 cut(s) 570
Bst6I CTCTTC 3 cut(s) 152, 279, 507
BstBI TTCGAA 1 cut(s) 221
BstDEI CTNAG 3 cut(s) 339, 402, 453
BstHHI GCGC 1 cut(s) 216
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 2 cut(s) 381, 470
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 4 cut(s) 31, 214, 369, 548
BstSCI CCNGG 1 cut(s) 589
BstSFI CTRYAG 3 cut(s) 79, 154, 304
BstV1I GCAGC 2 cut(s) 345, 381
Bsu36I CCTNAGG 1 cut(s) 453
BsuRI GGCC 1 cut(s) 231
BveI ACCTGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 2 cut(s) 74, 230
CsiI ACCWGGT 1 cut(s) 589
CviAII CATG 5 cut(s) 28, 211, 366, 494, 545
DdeI CTNAG 3 cut(s) 339, 402, 453
DraI TTTAAA 1 cut(s) 622
Eam1104I CTCTTC 3 cut(s) 152, 279, 507
EarI CTCTTC 3 cut(s) 152, 279, 507
Ecl136II GAGCTC 1 cut(s) 500
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 74
Eco53kI GAGCTC 1 cut(s) 500
Eco81I CCTNAGG 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 500
EcoO109I RGGNCCY 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 589
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 502
FaeI CATG 5 cut(s) 31, 214, 369, 497, 548
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 60
FatI CATG 5 cut(s) 27, 210, 365, 493, 544
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 359, 370, 373
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 3 cut(s) 359, 370, 373
GlaI GCGC 1 cut(s) 215
GluI GCNGC 3 cut(s) 359, 370, 373
HaeIII GGCC 1 cut(s) 231
HhaI GCGC 1 cut(s) 216
Hin1II CATG 5 cut(s) 31, 214, 369, 497, 548
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HinfI GANTC 3 cut(s) 84, 458, 654
HphI GGTGA 2 cut(s) 24, 272
Hpy188I TCNGA 3 cut(s) 193, 317, 405
Hpy188III TCNNGA 3 cut(s) 139, 423, 455
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 3, 629
HpyCH4III ACNGT 1 cut(s) 570
HpyCH4V TGCA 9 cut(s) 81, 156, 162, 168, 335, 361, 369, 493, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 381, 470
HpyF3I CTNAG 3 cut(s) 339, 402, 453
Hsp92II CATG 5 cut(s) 31, 214, 369, 497, 548
HspAI GCGC 1 cut(s) 214
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 497
LpnPI CCDG 9 cut(s) 86, 91, 142, 408, 440, 479, 576, 603, 657
Lsp1109I GCAGC 2 cut(s) 345, 381
MabI ACCWGGT 1 cut(s) 589
MaeIII GTNAC 2 cut(s) 30, 593
MboII GAAGA 6 cut(s) 59, 68, 139, 266, 494, 537
MfeI CAATTG 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 3 cut(s) 252, 263, 414
MlyI GAGTC 2 cut(s) 452, 663
MmeI TCCRAC 2 cut(s) 112, 216
MnlI CCTC 6 cut(s) 155, 207, 285, 288, 391, 462
Mph1103I ATGCAT 1 cut(s) 550
MseI TTAA 2 cut(s) 552, 621
MspA1I CMGCKG 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 591
MunI CAATTG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 591
MwoI GCNNNNNNNGC 2 cut(s) 381, 470
NdeI CATATG 1 cut(s) 164
NlaIII CATG 5 cut(s) 31, 214, 369, 497, 548
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 4 cut(s) 31, 214, 369, 548
NspV TTCGAA 1 cut(s) 221
PaqCI CACCTGC 1 cut(s) 147
PciI ACATGT 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 3 cut(s) 360, 371, 374
PleI GAGTC 2 cut(s) 452, 662
PpsI GAGTC 2 cut(s) 452, 662
PpuMI RGGWCCY 1 cut(s) 74
PscI ACATGT 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 502
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 74, 230
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 2 cut(s) 83, 158
SacI GAGCTC 1 cut(s) 502
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 2 cut(s) 552, 621
SatI GCNGC 3 cut(s) 359, 370, 373
Sau96I GGNCC 2 cut(s) 74, 230
SchI GAGTC 2 cut(s) 452, 663
ScrFI CCNGG 1 cut(s) 591
SduI GDGCHC 1 cut(s) 502
SexAI ACCWGGT 1 cut(s) 589
SfcI CTRYAG 3 cut(s) 79, 154, 304
SfuI TTCGAA 1 cut(s) 221
SinI GGWCC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 3 cut(s) 252, 263, 414
SsiI CCGC 2 cut(s) 372, 382
SspI AATATT 2 cut(s) 347, 629
SstI GAGCTC 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 589
TaaI ACNGT 1 cut(s) 570
TaqI TCGA 1 cut(s) 221
TasI AATT 3 cut(s) 252, 263, 414
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 2 cut(s) 552, 621
Tru9I TTAA 2 cut(s) 552, 621
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 2 cut(s) 358, 369
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 4 cut(s) 256, 494, 529, 648
TspGWI ACGGA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 74
XapI RAATTY 1 cut(s) 263
XceI RCATGY 4 cut(s) 31, 214, 369, 548
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.