pycom03g13180

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
14092973 .. 14095058
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g13180.2

Sequence Viewer

Length: 1356 bp
ATGCCGAGAGCAAATCAAAGAAACCCTAATAATCCAATGGAACAGAATACAAACAGAGCAGTGATGAGGAGCAAATTTCAATATCTGCCGCGGGGTTTGATGGTGGACATTCTCTCAAGGATAGTCTGCTTCAAGACCGTCTTGAACTGCAAGTGCGTTTGCAAAGAGTGGCTTTCTATAATTTCTGACCCTGGATTTGCTCGTCTCCATCTTCCGAGATCACCCATTGGGATATTGGTGAACGTTTGGCAATCTCATTCTCCAGTGAAAAAACTTGATTTGGCCCAGATAGTAGAAAGTGCTGCTGGTACTGGTTTTGGGGTCAAAAAAATGATTTTCACTTCCAAAAATAGACTGCCCAGTTTCGAGTTCGAGTTGATAAACTCTTGTGATGGTTTACTTTGTTTGTATGGACCGGAAACTGATGGTCTGTATGTGTGCAACCCTGTGTTGGGCGAGTGCATCGCAATTCCACCTATTAATAATGGTAGGTGTCGCTGCGGTTTTGTTGCACTTGGTTATAACATTGGGACCAATGAATACAAGGTGTTGCAAACAACCTCATCTAATAACGAATTCTATGGTGAGCGTGAGGCTGAGATATACACCATTGGCACAGGAGTTTGGAGAAGCCTTGGAAGTGTTCCTCAAACTATACTTGATACAGACGAAGCAATTCAGTTACCGTTTGACGCTTTTCTGCACGGAGCTCAACATTGGGCTCCATATGACTTGTCAGAGCTTTCTATATATTCTTTCAATTTTGAAAGAGAACAATTTCAATCGCTACCCACACCTACACTCTCACCTGGGATCGTGGAAGCAATGCATGAGCGGTATTCAGATTATTTACAGTTGGGACAGTTAGGAGGTTGTCTCCTTCTATGTGTGCATGATAAACCGTCTACCAAATTAGAGTTCTGGGTTATGAAGGAATATGGGGTCCAACAGTCTTGGACTAAAATTCTTGTCATTGATAACTTGTCCCCAAGATGTTTTGGGTACATGCCAATTATGTTTTTGAGTAATGGAGAAATCCTAATAGCATACGTGGAAAAGCAAAACAACTGTAGCGGCAGCCGGCTTGTTGGTTGTTACAATCAAGAAGCAAAAACTTTCAGGCGAACTACAGTTACTGATCTCACCCAAGAATTTTTTCATGCAATTGCTTACAGTCCATCCTTTGTTTCACTCAATGATGTTGCAAAAGGAGAAGAAGTCAAAAGGATAAGAGACAGGAAGAAATCTAAGAAGCACATTGGTAAATCGAAGCCCACAGAACTGGACTTCAAATTGCATGCTTTTGATATGTGGTTCGAGCGAAATTCCTATGAGATTTACTTTTTGGATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

452

Amino Acids

51.25

Weight (kDa)

7.48

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AccBSI CCGCTC 1 cut(s) 835
AccI GTMKAC 1 cut(s) 905
AccII CGCG 1 cut(s) 91
AciI CCGC 5 cut(s) 89, 91, 501, 835, 1074
AclI AACGTT 1 cut(s) 243
AclWI GGATC 1 cut(s) 821
AcsI RAATTY 5 cut(s) 74, 575, 963, 1151, 1324
AfaI GTAC 2 cut(s) 310, 1004
AfiI CCNNNNNNNGG 2 cut(s) 451, 452
AgsI TTSAA 7 cut(s) 80, 133, 145, 760, 767, 782, 1291
AjnI CCWGG 2 cut(s) 190, 808
AjuI GAANNNNNNNTTGG 4 cut(s) 902, 934, 1140, 1172
AluBI AGCT 2 cut(s) 710, 742
AluI AGCT 2 cut(s) 710, 742
Alw21I GWGCWC 1 cut(s) 712
Alw26I GTCTC 3 cut(s) 209, 881, 1227
AlwI GGATC 1 cut(s) 821
AlwNI CAGNNNCTG 1 cut(s) 1136
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 3 cut(s) 302, 498, 1077
ApoI RAATTY 5 cut(s) 74, 575, 963, 1151, 1324
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AseI ATTAAT 1 cut(s) 480
Asp700I GAANNNNTTC 3 cut(s) 675, 777, 1155
AspS9I GGNCC 4 cut(s) 283, 413, 531, 943
AsuHPI GGTGA 5 cut(s) 213, 250, 596, 798, 1135
AvaII GGWCC 3 cut(s) 413, 531, 943
BanII GRGCYC 2 cut(s) 712, 724
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 3 cut(s) 289, 485, 1089
BccI CCATC 6 cut(s) 94, 216, 386, 419, 1186, 1343
BciT130I CCWGG 2 cut(s) 192, 810
BcoDI GTCTC 3 cut(s) 209, 881, 1227
BfmI CTRYAG 2 cut(s) 1069, 1128
BisI GCNGC 5 cut(s) 89, 303, 499, 1075, 1078
BlsI GCNGC 5 cut(s) 90, 304, 500, 1076, 1079
Bme1390I CCNGG 2 cut(s) 192, 810
Bme18I GGWCC 3 cut(s) 413, 531, 943
BmgT120I GGNCC 4 cut(s) 283, 413, 531, 943
BmiI GGNNCC 3 cut(s) 532, 723, 944
BmrFI CCNGG 2 cut(s) 192, 810
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 471
BmuI ACTGGG 1 cut(s) 354
BplI GAGNNNNNCTC 2 cut(s) 861, 893
BpmI CTGGAG 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 1051
BsaJI CCNNGG 4 cut(s) 89, 190, 634, 809
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 1203, 1233
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 452
Bse118I RCCGGY 1 cut(s) 1080
Bse1I ACTGG 4 cut(s) 263, 316, 360, 1287
Bse3DI GCAATG 1 cut(s) 831
BseBI CCWGG 2 cut(s) 192, 810
BseDI CCNNGG 4 cut(s) 89, 190, 634, 809
BseGI GGATG 2 cut(s) 1178, 1354
BseLI CCNNNNNNNGG 2 cut(s) 451, 452
BseMI GCAATG 1 cut(s) 831
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 4 cut(s) 263, 316, 360, 1287
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 3 cut(s) 289, 485, 1089
BsgI GTGCAG 1 cut(s) 686
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 712
BsiSI CCGG 2 cut(s) 416, 1081
BslFI GGGAC 3 cut(s) 544, 873, 970
BslI CCNNNNNNNGG 2 cut(s) 451, 452
BsmAI GTCTC 3 cut(s) 209, 881, 1227
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 3 cut(s) 544, 873, 970
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 712, 724
Bsp143I GATC 3 cut(s) 218, 813, 1138
BspACI CCGC 5 cut(s) 89, 91, 501, 835, 1074
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 589
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 532, 723, 944
BspPI GGATC 1 cut(s) 821
BsrBI CCGCTC 1 cut(s) 835
BsrDI GCAATG 1 cut(s) 831
BsrFI RCCGGY 1 cut(s) 1080
BsrI ACTGG 4 cut(s) 263, 316, 360, 1287
BssAI RCCGGY 1 cut(s) 1080
BssECI CCNNGG 4 cut(s) 89, 190, 634, 809
BssMI GATC 3 cut(s) 218, 813, 1138
BssT1I CCWWGG 1 cut(s) 634
Bst2UI CCWGG 2 cut(s) 192, 810
Bst4CI ACNGT 9 cut(s) 139, 687, 855, 864, 903, 951, 1070, 1132, 1175
BstBAI YACGTR 1 cut(s) 1051
BstC8I GCNNGC 2 cut(s) 1082, 1299
BstDEI CTNAG 2 cut(s) 597, 1248
BstDSI CCRYGG 1 cut(s) 89
BstF5I GGATG 2 cut(s) 1178, 1354
BstFNI CGCG 1 cut(s) 91
BstKTI GATC 3 cut(s) 221, 816, 1141
BstMAI GTCTC 3 cut(s) 209, 881, 1227
BstMBI GATC 3 cut(s) 218, 813, 1138
BstNI CCWGG 2 cut(s) 192, 810
BstNSI RCATGY 2 cut(s) 1009, 1301
BstSCI CCNGG 2 cut(s) 190, 808
BstSFI CTRYAG 2 cut(s) 1069, 1128
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 3 cut(s) 289, 485, 1089
BstXI CCANNNNNNTGG 1 cut(s) 1282
BsuRI GGCC 1 cut(s) 284
BtgI CCRYGG 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 448
BtsCI GGATG 2 cut(s) 1178, 1354
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 270
Cac8I GCNNGC 2 cut(s) 1082, 1299
CaiI CAGNNNCTG 1 cut(s) 1136
Cfr10I RCCGGY 1 cut(s) 1080
Cfr13I GGNCC 4 cut(s) 283, 413, 531, 943
Cfr42I CCGCGG 1 cut(s) 92
CseI GACGC 1 cut(s) 701
Csp6I GTAC 2 cut(s) 309, 1003
CviAII CATG 5 cut(s) 830, 893, 1006, 1160, 1298
CviQI GTAC 2 cut(s) 309, 1003
DdeI CTNAG 2 cut(s) 597, 1248
DpnI GATC 3 cut(s) 220, 815, 1140
DpnII GATC 3 cut(s) 218, 813, 1138
Ecl136II GAGCTC 1 cut(s) 710
Eco130I CCWWGG 1 cut(s) 634
Eco24I GRGCYC 2 cut(s) 712, 724
Eco47I GGWCC 3 cut(s) 413, 531, 943
Eco53kI GAGCTC 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 190, 808
EcoT14I CCWWGG 1 cut(s) 634
EcoT22I ATGCAT 1 cut(s) 831
EcoT38I GRGCYC 2 cut(s) 712, 724
ErhI CCWWGG 1 cut(s) 634
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 5 cut(s) 833, 896, 1009, 1163, 1301
FalI AAGNNNNNCTT 4 cut(s) 125, 157, 156, 188
FaqI GGGAC 3 cut(s) 544, 873, 970
FatI CATG 5 cut(s) 829, 892, 1005, 1159, 1297
FauI CCCGC 1 cut(s) 84
FauNDI CATATG 1 cut(s) 727
FblI GTMKAC 1 cut(s) 905
Fnu4HI GCNGC 5 cut(s) 89, 303, 499, 1075, 1078
FokI GGATG 1 cut(s) 1165
FriOI GRGCYC 2 cut(s) 712, 724
Fsp4HI GCNGC 5 cut(s) 89, 303, 499, 1075, 1078
GluI GCNGC 5 cut(s) 89, 303, 499, 1075, 1078
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 284
HapII CCGG 2 cut(s) 416, 1081
HgaI GACGC 1 cut(s) 701
Hin1II CATG 5 cut(s) 833, 896, 1009, 1163, 1301
HpaII CCGG 2 cut(s) 416, 1081
HphI GGTGA 5 cut(s) 213, 250, 596, 798, 1135
Hpy166II GTNNAC 4 cut(s) 106, 241, 398, 906
Hpy188I TCNGA 4 cut(s) 187, 216, 739, 844
Hpy188III TCNNGA 3 cut(s) 133, 142, 1103
Hpy8I GTNNAC 4 cut(s) 106, 241, 398, 906
HpyAV CCTTC 2 cut(s) 890, 925
HpyCH4III ACNGT 9 cut(s) 139, 687, 855, 864, 903, 951, 1070, 1132, 1175
HpyCH4IV ACGT 2 cut(s) 243, 1050
HpyF3I CTNAG 2 cut(s) 597, 1248
HpySE526I ACGT 2 cut(s) 243, 1050
Hsp92II CATG 5 cut(s) 833, 896, 1009, 1163, 1301
KroI GCCGGC 1 cut(s) 1080
KroNI GCCGGC 1 cut(s) 1082
KspI CCGCGG 1 cut(s) 92
Kzo9I GATC 3 cut(s) 218, 813, 1138
LmnI GCTCC 3 cut(s) 69, 707, 727
Lsp1109I GCAGC 3 cut(s) 289, 485, 1089
LweI GCATC 1 cut(s) 471
MaeII ACGT 2 cut(s) 243, 1050
MaeIII GTNAC 3 cut(s) 681, 1094, 1132
MalI GATC 3 cut(s) 220, 815, 1140
MbiI CCGCTC 1 cut(s) 835
MboI GATC 3 cut(s) 218, 813, 1138
MboII GAAGA 3 cut(s) 203, 1226, 1252
MfeI CAATTG 1 cut(s) 1164
MhlI GDGCHC 2 cut(s) 712, 724
MmeI TCCRAC 1 cut(s) 970
MnlI CCTC 5 cut(s) 60, 571, 586, 657, 863
Mph1103I ATGCAT 1 cut(s) 831
MroNI GCCGGC 1 cut(s) 1080
MroXI GAANNNNTTC 3 cut(s) 675, 777, 1155
MseI TTAA 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 2 cut(s) 416, 1081
MspR9I CCNGG 2 cut(s) 192, 810
MunI CAATTG 1 cut(s) 1164
MvaI CCWGG 2 cut(s) 192, 810
MvnI CGCG 1 cut(s) 91
NaeI GCCGGC 1 cut(s) 1082
NdeI CATATG 1 cut(s) 727
NdeII GATC 3 cut(s) 218, 813, 1138
NgoMIV GCCGGC 1 cut(s) 1080
NlaIII CATG 5 cut(s) 833, 896, 1009, 1163, 1301
NlaIV GGNNCC 3 cut(s) 532, 723, 944
NmeAIII GCCGAG 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 831
NspI RCATGY 2 cut(s) 1009, 1301
PaeI GCATGC 1 cut(s) 1301
PdiI GCCGGC 1 cut(s) 1082
PdmI GAANNNNTTC 3 cut(s) 675, 777, 1155
PkrI GCNGC 5 cut(s) 90, 304, 500, 1076, 1079
Ppu21I YACGTR 1 cut(s) 1051
PshBI ATTAAT 1 cut(s) 480
PsiI TTATAA 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 712
Psp1406I AACGTT 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 190, 808
PspGI CCWGG 2 cut(s) 190, 808
PspN4I GGNNCC 3 cut(s) 532, 723, 944
PspPI GGNCC 4 cut(s) 283, 413, 531, 943
PsrI GAACNNNNNNTAC 2 cut(s) 1117, 1149
PstNI CAGNNNCTG 1 cut(s) 1136
RsaI GTAC 2 cut(s) 310, 1004
RsaNI GTAC 2 cut(s) 309, 1003
SacI GAGCTC 1 cut(s) 712
SacII CCGCGG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 5 cut(s) 89, 303, 499, 1075, 1078
Sau3AI GATC 3 cut(s) 218, 813, 1138
Sau96I GGNCC 4 cut(s) 283, 413, 531, 943
ScrFI CCNGG 2 cut(s) 192, 810
SduI GDGCHC 2 cut(s) 712, 724
SfaNI GCATC 1 cut(s) 471
SfcI CTRYAG 2 cut(s) 1069, 1128
Sfr303I CCGCGG 1 cut(s) 92
SgrBI CCGCGG 1 cut(s) 92
SinI GGWCC 3 cut(s) 413, 531, 943
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SphI GCATGC 1 cut(s) 1301
SsiI CCGC 5 cut(s) 89, 91, 501, 835, 1074
SstI GAGCTC 1 cut(s) 712
StyD4I CCNGG 2 cut(s) 190, 808
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 9 cut(s) 139, 687, 855, 864, 903, 951, 1070, 1132, 1175
TaiI ACGT 2 cut(s) 246, 1053
TaqI TCGA 4 cut(s) 366, 372, 1268, 1317
TauI GCSGC 2 cut(s) 91, 1077
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 2 cut(s) 66, 270
TseI GCWGC 3 cut(s) 302, 498, 1077
TspDTI ATGAA 3 cut(s) 552, 944, 1148
TspGWI ACGGA 1 cut(s) 720
TspRI CASTG 2 cut(s) 66, 270
VpaK11BI GGWCC 3 cut(s) 413, 531, 943
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 5 cut(s) 74, 575, 963, 1151, 1324
XceI RCATGY 2 cut(s) 1009, 1301
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 905
XmnI GAANNNNTTC 3 cut(s) 675, 777, 1155
Zsp2I ATGCAT 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.