Rh6BG436600

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000298
Physical Location & Seq
Reverse (-)
65600711 .. 65604537
3827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG436600.1

Sequence Viewer

Length: 1086 bp
ATGCCGATTGCAAAGAGAAACCGAGGCGACCGCTCAGGGGATTATCCAAGGCAACCCGAAGCACCACCGATCATCCAAGAGAAATGGGAACCTGACGGACCTTGCATAATCCAACACCTTCAAAATGACTTACTCATTGAGATTCTGTCATGGCTCCCGGTGAAGACCATCTGGAATTGTAAGTTTGTTTGCAAAGCCTGGCTTTTAGTAAGTTCTGAACCCCGTTTTGTCCGTCTGCACCATTCAAGATCTGCCTCTGGGATCTTGATTCAGATCCGTAGTACTCCCCATAATAAAAATATTGCTAGGAGACTGCATTTCACTCAGGTAGATAAGTGTGCTGGTTCTGATAATTTGCTCATGGAAAAATTGACCTTCACTACTAAAAACACTGCACCCGTTGATGTATTTACAGTAGTGAACTCCTGCAACGGTTTGGTTTGTTTGTCTGGGTATAAAGAAGAGAGCTCTTTGATTGTGTGTAATCCTCTTTTGCACGAGTACATTAAAGTTCCTCTCGCTAGAAATAAGAAATGGGGAGATTTTGCTGCACTTGGTTTTAGCTCAGTGACAAATGAATACAAGTTGTTGCGAATATTTTCTCCAGATTGGTGTAATTATACGAATAACCGTCAGGCTGAAGACCAGCAACCTGGAGCTTTTTTTGGAATTGGTTTTAGCGTCCAAACCAATCAGTACAAGCTGTTGGATACCTTTCGTCCAAACTTGTGTAGCGATTACCTTGAGGCTAAATTGGTACAGGAGTTTGTAGAAGCATTGGAAATGCTCCTACTGATGATTGTTGACATGTCACCATGCAATTCTCTTCTGCATGTAGCTCTTCATTGGCTTCTCATGGGTTTAAATGGTTCTCACGTTATACATTCTTTCGATTTCGAAACTGAACAATTTCGACCACTACTTTTGCCTTCTGAAGATCGTTTGAGGTCTTGCTCCCAATATGATTGTTTCAGGTTAGGAGTTTGGGAAAGTTGTCTGTCATTATCTGTGGTTGGTGTTGATGAGCACGAATTTGACATTTGGTTTGTGAAGGATTATAAATGGTGTCCGAGAGTCTTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

361

Amino Acids

41.53

Weight (kDa)

6.27

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 38 - 76 4.7e-06 F-box domain
FBA_3 PF08268 120 - 201 1.4e-07 F-box associated beta propeller domain
FBA_1 PF07734 127 - 242 5e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1059
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 1 cut(s) 31
AclWI GGATC 2 cut(s) 268, 269
AcsI RAATTY 1 cut(s) 1031
AcuI CTGAAG 2 cut(s) 660, 954
AfaI GTAC 4 cut(s) 283, 503, 698, 759
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 2 cut(s) 122, 246
AjnI CCWGG 2 cut(s) 197, 652
AluBI AGCT 5 cut(s) 468, 564, 659, 703, 839
AluI AGCT 5 cut(s) 468, 564, 659, 703, 839
Alw21I GWGCWC 2 cut(s) 470, 1029
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 268, 269
ApeKI GCWGC 1 cut(s) 548
ApoI RAATTY 1 cut(s) 1031
ArsI GACNNNNNNTTYG 2 cut(s) 1028, 1060
Asp700I GAANNNNTTC 2 cut(s) 598, 909
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 172, 804
AsuII TTCGAA 1 cut(s) 897
AvaII GGWCC 1 cut(s) 98
BaeI ACNNNNGTAYC 2 cut(s) 749, 782
BanII GRGCYC 1 cut(s) 470
BauI CACGAG 1 cut(s) 497
BbsI GAAGAC 2 cut(s) 170, 648
Bbv12I GWGCWC 2 cut(s) 470, 1029
BbvI GCAGC 1 cut(s) 535
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 2 cut(s) 199, 654
BciVI GTATCC 1 cut(s) 703
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 2 cut(s) 306, 522
BfuI GTATCC 1 cut(s) 703
BglII AGATCT 1 cut(s) 248
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 3 cut(s) 158, 199, 654
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 90, 155
BmrFI CCNGG 3 cut(s) 158, 199, 654
BpiI GAAGAC 2 cut(s) 170, 648
BpmI CTGGAG 2 cut(s) 588, 675
Bpu10I CCTNAGC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 897
BpuEI CTTGAG 1 cut(s) 764
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 22, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 272
BseBI CCWGG 2 cut(s) 199, 654
BseDI CCNNGG 2 cut(s) 22, 47
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 3 cut(s) 48, 338, 579
BseXI GCAGC 1 cut(s) 535
BsgI GTGCAG 3 cut(s) 221, 378, 534
Bsh1285I CGRYCG 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 470, 1029
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 304
Bsp119I TTCGAA 1 cut(s) 897
Bsp1286I GDGCHC 2 cut(s) 470, 1029
Bsp143I GATC 5 cut(s) 69, 248, 261, 273, 937
BspACI CCGC 1 cut(s) 31
BspCNI CTCAG 3 cut(s) 47, 337, 578
BspLI GGNNCC 2 cut(s) 90, 155
BspPI GGATC 2 cut(s) 268, 269
BspQI GCTCTTC 1 cut(s) 846
BspT104I TTCGAA 1 cut(s) 897
BsrBI CCGCTC 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 22, 47
BssMI GATC 5 cut(s) 69, 248, 261, 273, 937
BssSI CACGAG 1 cut(s) 497
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 2 cut(s) 199, 654
Bst4CI ACNGT 3 cut(s) 415, 434, 632
Bst6I CTCTTC 3 cut(s) 456, 831, 846
BstBI TTCGAA 1 cut(s) 897
BstDEI CTNAG 3 cut(s) 34, 324, 565
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 5 cut(s) 72, 251, 264, 276, 940
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 5 cut(s) 69, 248, 261, 273, 937
BstMCI CGRYCG 1 cut(s) 31
BstNI CCWGG 2 cut(s) 199, 654
BstNSI RCATGY 2 cut(s) 811, 836
BstSCI CCNGG 3 cut(s) 156, 197, 652
BstV1I GCAGC 1 cut(s) 535
BstV2I GAAGAC 2 cut(s) 170, 648
BstX2I RGATCY 3 cut(s) 248, 261, 273
BstXI CCANNNNNNTGG 1 cut(s) 653
BstYI RGATCY 3 cut(s) 248, 261, 273
BsuI GTATCC 1 cut(s) 703
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 2 cut(s) 390, 573
Cfr13I GGNCC 1 cut(s) 98
CseI GACGC 1 cut(s) 670
Csp6I GTAC 4 cut(s) 282, 502, 697, 758
CspCI CAANNNNNGTGG 2 cut(s) 906, 941
CviAII CATG 6 cut(s) 150, 361, 808, 816, 833, 856
CviQI GTAC 4 cut(s) 282, 502, 697, 758
DdeI CTNAG 3 cut(s) 34, 324, 565
DpnI GATC 5 cut(s) 71, 250, 263, 275, 939
DpnII GATC 5 cut(s) 69, 248, 261, 273, 937
DraI TTTAAA 1 cut(s) 864
Eam1104I CTCTTC 3 cut(s) 456, 831, 846
EarI CTCTTC 3 cut(s) 456, 831, 846
Ecl136II GAGCTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 660, 954
EcoICRI GAGCTC 1 cut(s) 468
EcoRII CCWGG 2 cut(s) 197, 652
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 6 cut(s) 153, 364, 811, 819, 836, 859
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 6 cut(s) 149, 360, 807, 815, 832, 855
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 2 cut(s) 306, 522
GluI GCNGC 1 cut(s) 549
GsuI CTGGAG 2 cut(s) 588, 675
HapII CCGG 1 cut(s) 158
HgaI GACGC 1 cut(s) 670
Hin1II CATG 6 cut(s) 153, 364, 811, 819, 836, 859
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 3 cut(s) 142, 268, 1074
HpaII CCGG 1 cut(s) 158
HphI GGTGA 2 cut(s) 172, 804
Hpy166II GTNNAC 2 cut(s) 421, 805
Hpy188I TCNGA 5 cut(s) 217, 273, 349, 934, 1071
Hpy188III TCNNGA 4 cut(s) 172, 246, 265, 605
Hpy8I GTNNAC 2 cut(s) 421, 805
HpyAV CCTTC 4 cut(s) 128, 385, 939, 1045
HpyCH4III ACNGT 3 cut(s) 415, 434, 632
HpyCH4IV ACGT 1 cut(s) 876
HpyF3I CTNAG 3 cut(s) 34, 324, 565
HpySE526I ACGT 1 cut(s) 876
Hsp92II CATG 6 cut(s) 153, 364, 811, 819, 836, 859
Kzo9I GATC 5 cut(s) 69, 248, 261, 273, 937
LguI GCTCTTC 1 cut(s) 846
LmnI GCTCC 4 cut(s) 159, 656, 792, 959
Lsp1109I GCAGC 1 cut(s) 535
MaeI CTAG 2 cut(s) 306, 522
MaeII ACGT 1 cut(s) 876
MaeIII GTNAC 2 cut(s) 568, 810
MalI GATC 5 cut(s) 71, 250, 263, 275, 939
MbiI CCGCTC 1 cut(s) 33
MboI GATC 5 cut(s) 69, 248, 261, 273, 937
MboII GAAGA 6 cut(s) 175, 473, 653, 818, 833, 947
MflI RGATCY 3 cut(s) 248, 261, 273
MhlI GDGCHC 2 cut(s) 470, 1029
MluCI AATT 9 cut(s) 175, 352, 368, 616, 669, 752, 820, 908, 1031
MlyI GAGTC 1 cut(s) 1083
MmeI TCCRAC 2 cut(s) 136, 687
MnlI CCTC 6 cut(s) 17, 265, 498, 525, 739, 939
MroXI GAANNNNTTC 2 cut(s) 598, 909
MseI TTAA 2 cut(s) 507, 863
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 3 cut(s) 158, 199, 654
MvaI CCWGG 2 cut(s) 199, 654
NciI CCSGG 1 cut(s) 158
NdeII GATC 5 cut(s) 69, 248, 261, 273, 937
NlaIII CATG 6 cut(s) 153, 364, 811, 819, 836, 859
NlaIV GGNNCC 2 cut(s) 90, 155
NmuCI GTSAC 2 cut(s) 568, 810
NspI RCATGY 2 cut(s) 811, 836
NspV TTCGAA 1 cut(s) 897
PciI ACATGT 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 846
PdmI GAANNNNTTC 2 cut(s) 598, 909
PfeI GAWTC 2 cut(s) 142, 268
PkrI GCNGC 1 cut(s) 550
PleI GAGTC 1 cut(s) 1082
PpsI GAGTC 1 cut(s) 1082
PscI ACATGT 1 cut(s) 807
PsiI TTATAA 1 cut(s) 1059
Psp124BI GAGCTC 1 cut(s) 470
Psp6I CCWGG 2 cut(s) 197, 652
PspGI CCWGG 2 cut(s) 197, 652
PspN4I GGNNCC 2 cut(s) 90, 155
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 3 cut(s) 248, 261, 273
RsaI GTAC 4 cut(s) 283, 503, 698, 759
RsaNI GTAC 4 cut(s) 282, 502, 697, 758
SacI GAGCTC 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 846
SaqAI TTAA 2 cut(s) 507, 863
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 5 cut(s) 69, 248, 261, 273, 937
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 1 cut(s) 1083
ScrFI CCNGG 3 cut(s) 158, 199, 654
SduI GDGCHC 2 cut(s) 470, 1029
SfuI TTCGAA 1 cut(s) 897
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
Sse9I AATT 9 cut(s) 175, 352, 368, 616, 669, 752, 820, 908, 1031
SsiI CCGC 1 cut(s) 31
SspI AATATT 2 cut(s) 301, 597
SspMI CTAG 2 cut(s) 306, 522
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 3 cut(s) 156, 197, 652
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 415, 434, 632
TaiI ACGT 1 cut(s) 879
TaqI TCGA 3 cut(s) 891, 897, 913
TasI AATT 9 cut(s) 175, 352, 368, 616, 669, 752, 820, 908, 1031
TatI WGTACW 3 cut(s) 281, 501, 696
TfiI GAWTC 2 cut(s) 142, 268
Tru1I TTAA 2 cut(s) 507, 863
Tru9I TTAA 2 cut(s) 507, 863
TscAI CASTG 2 cut(s) 397, 573
TseFI GTSAC 2 cut(s) 568, 810
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 2 cut(s) 568, 810
TspDTI ATGAA 2 cut(s) 591, 833
TspGWI ACGGA 3 cut(s) 111, 221, 266
TspRI CASTG 2 cut(s) 397, 573
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 1031
XceI RCATGY 2 cut(s) 811, 836
XmnI GAANNNNTTC 2 cut(s) 598, 909
XspI CTAG 2 cut(s) 306, 522
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.