Rw6G040460

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000298
Physical Location & Seq
Forward (+)
64258493 .. 64264393
5901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040460.1

Sequence Viewer

Length: 1107 bp
ATGCCGACTGCAAAGAGAAACCAAGTCGACCGCTCAGGGGATTATCCAAGGCAACCCGAAGCACCACCGATCATCCAAGAGAAATGGGAACCTGACGGACCTTGCATAATCCAACACCTTCAAAATGACTTACTCATTGAGATTCTGTCATGGCTCCTGGTGAAGACCATCTGGAATTGTAAGTTTGTTTGTAAAGCCTGGCTTTTAGTAATTTCTGAACCCCGTTTTGTCCGTCTGCACCATTCAAGATCTGCCTCTGGGATCTTGATTCAGATCCGTAGTACTCCCCATAATAAAAATATTGCTAGGAGACTGCATTTCACTCATGTAGATAAGTGTGCTGGTTCTGATAATTTGCTCATGGAAAAATTGACCTTCACTACTAAAAACACTGCACCCGTTGATGTATTTACAGTAGTGAACTCCTGCAACGGTTTGGTTTGTTTGTCTGGGTATAAAGAAGAGAGCTCTTTGATTGTGTGTAATCCTCTTTTGCACGAGTACATTAAAGTTCCTCTCGCTAGTAATAAGAAATTAATGGGGAGATTTTGCTGCAGTTGTTGTTGCGAATATTTTCTCCAGATTGGCGTAATTATACGAATAACCGTCAGGCTGAAGTTTGCACGTACTATCGGCTCAGGAGTTTGGACGAGCATTGGAAATGCTCCTACTGACAAGGCTATATTACCCTTTAATTCTTTTCTGCATGGAGCTATTGATTTTGCTCCAATCGATTCTAGAGGTTCTTCCTTGATACATTCTTTCGATTTCGAAAGAGAACAGTTTCAAGCACTGCCGCCGCCCTCAAGTGATCATTTGAAGTTGAAGTCTAACAGAGGTGGTATAAGTTTGGGAGTGTGGGAGAGTCGTCTCTCATATTGTGTGTTTGATATACATGCTACCAAATTTGACTTGTGGATTATGAAGGAGTATGGGCGCTCAATAACTGAATTTTACGAACCGGTTATGTACTTCAGGGATGGGGAAATTTTAATGGTCTATAATGATCGGATTATAGTTTCTTATAATCCGAAAACAAAAACTTTCAAAAAAACAAAAATCATTCAGACTCGGTGCAGCTCCTTTCACGTACTCAGTTGCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

368

Amino Acids

41.99

Weight (kDa)

9.03

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
AccBSI CCGCTC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 27
AciI CCGC 3 cut(s) 31, 797, 800
AclWI GGATC 2 cut(s) 268, 269
AcsI RAATTY 3 cut(s) 905, 950, 987
AcuI CTGAAG 2 cut(s) 635, 958
AfaI GTAC 5 cut(s) 283, 503, 628, 971, 1092
AfiI CCNNNNNNNGG 1 cut(s) 37
AgeI ACCGGT 1 cut(s) 961
AgsI TTSAA 6 cut(s) 122, 246, 788, 820, 826, 1048
AjnI CCWGG 2 cut(s) 156, 197
AluBI AGCT 3 cut(s) 468, 713, 1080
AluI AGCT 3 cut(s) 468, 713, 1080
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 2 cut(s) 304, 875
AlwI GGATC 2 cut(s) 268, 269
ApeKI GCWGC 2 cut(s) 552, 1077
ApoI RAATTY 3 cut(s) 905, 950, 987
AseI ATTAAT 1 cut(s) 536
AsiGI ACCGGT 1 cut(s) 961
Asp700I GAANNNNTTC 2 cut(s) 573, 783
AspLEI GCGC 1 cut(s) 939
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 172
AsuII TTCGAA 1 cut(s) 771
AvaII GGWCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 470
BauI CACGAG 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 2 cut(s) 539, 1089
BccI CCATC 2 cut(s) 176, 974
BciT130I CCWGG 2 cut(s) 158, 199
BclI TGATCA 1 cut(s) 811
BcoDI GTCTC 2 cut(s) 304, 875
BfaI CTAG 3 cut(s) 306, 522, 738
BfmI CTRYAG 1 cut(s) 553
BfoI RGCGCY 1 cut(s) 940
BglII AGATCT 1 cut(s) 248
BisI GCNGC 4 cut(s) 553, 797, 800, 1078
BlsI GCNGC 4 cut(s) 554, 798, 801, 1079
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 2 cut(s) 158, 199
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 90, 155
BmrFI CCNGG 2 cut(s) 158, 199
BpiI GAAGAC 1 cut(s) 170
BpmI CTGGAG 1 cut(s) 563
Bpu10I CCTNAGC 2 cut(s) 34, 637
Bpu14I TTCGAA 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 790
Bsa29I ATCGAT 1 cut(s) 732
BsaAI YACGTR 2 cut(s) 626, 1090
BsaBI GATNNNNATC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 961
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 961
Bse8I GATNNNNATC 1 cut(s) 272
BseBI CCWGG 2 cut(s) 158, 199
BseCI ATCGAT 1 cut(s) 732
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 2 cut(s) 72, 985
BseJI GATNNNNATC 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 48, 651
BseXI GCAGC 2 cut(s) 539, 1089
BsgI GTGCAG 3 cut(s) 221, 378, 1096
Bsh1285I CGRYCG 1 cut(s) 31
BshTI ACCGGT 1 cut(s) 961
BshVI ATCGAT 1 cut(s) 732
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 470
BsiSI CCGG 1 cut(s) 962
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 2 cut(s) 304, 875
BsmBI CGTCTC 1 cut(s) 875
Bsp119I TTCGAA 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 6 cut(s) 69, 248, 261, 273, 811, 1006
BspACI CCGC 3 cut(s) 31, 797, 800
BspCNI CTCAG 3 cut(s) 47, 650, 1107
BspDI ATCGAT 1 cut(s) 732
BspLI GGNNCC 2 cut(s) 90, 155
BspMAI CTGCAG 1 cut(s) 557
BspPI GGATC 2 cut(s) 268, 269
BspT104I TTCGAA 1 cut(s) 771
BsrBI CCGCTC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 961
BssAI RCCGGY 1 cut(s) 961
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 6 cut(s) 69, 248, 261, 273, 811, 1006
BssSI CACGAG 1 cut(s) 497
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 2 cut(s) 158, 199
Bst4CI ACNGT 4 cut(s) 415, 434, 607, 783
Bst6I CTCTTC 1 cut(s) 456
BstBAI YACGTR 2 cut(s) 626, 1090
BstBI TTCGAA 1 cut(s) 771
BstDEI CTNAG 3 cut(s) 34, 637, 1094
BstF5I GGATG 2 cut(s) 72, 985
BstH2I RGCGCY 1 cut(s) 940
BstHHI GCGC 1 cut(s) 939
BstKTI GATC 6 cut(s) 72, 251, 264, 276, 814, 1009
BstMAI GTCTC 2 cut(s) 304, 875
BstMBI GATC 6 cut(s) 69, 248, 261, 273, 811, 1006
BstMCI CGRYCG 1 cut(s) 31
BstNI CCWGG 2 cut(s) 158, 199
BstNSI RCATGY 1 cut(s) 899
BstSCI CCNGG 2 cut(s) 156, 197
BstSFI CTRYAG 1 cut(s) 553
BstV1I GCAGC 2 cut(s) 539, 1089
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 3 cut(s) 248, 261, 273
BstYI RGATCY 3 cut(s) 248, 261, 273
Bsu15I ATCGAT 1 cut(s) 732
BsuTUI ATCGAT 1 cut(s) 732
BtsCI GGATG 2 cut(s) 72, 985
BtsI GCAGTG 2 cut(s) 390, 791
BtsIMutI CAGTG 2 cut(s) 390, 791
CfoI GCGC 1 cut(s) 939
Cfr10I RCCGGY 1 cut(s) 961
Cfr13I GGNCC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 732
Csp6I GTAC 5 cut(s) 282, 502, 627, 970, 1091
CspAI ACCGGT 1 cut(s) 961
CviAII CATG 5 cut(s) 150, 326, 361, 707, 896
CviJI RGCY 9 cut(s) 154, 197, 202, 468, 613, 636, 680, 713, 1080
CviKI_1 RGCY 9 cut(s) 154, 197, 202, 468, 613, 636, 680, 713, 1080
CviQI GTAC 5 cut(s) 282, 502, 627, 970, 1091
DdeI CTNAG 3 cut(s) 34, 637, 1094
DpnI GATC 6 cut(s) 71, 250, 263, 275, 813, 1008
DpnII GATC 6 cut(s) 69, 248, 261, 273, 811, 1006
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 635, 958
EcoICRI GAGCTC 1 cut(s) 468
EcoRII CCWGG 2 cut(s) 156, 197
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 875
FaeI CATG 5 cut(s) 153, 329, 364, 710, 899
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 5 cut(s) 149, 325, 360, 706, 895
FbaI TGATCA 1 cut(s) 811
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 553, 797, 800, 1078
FokI GGATG 2 cut(s) 59, 992
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 4 cut(s) 553, 797, 800, 1078
FspBI CTAG 3 cut(s) 306, 522, 738
GlaI GCGC 1 cut(s) 938
GluI GCNGC 4 cut(s) 553, 797, 800, 1078
GsuI CTGGAG 1 cut(s) 563
HaeII RGCGCY 1 cut(s) 940
HapII CCGG 1 cut(s) 962
HhaI GCGC 1 cut(s) 939
Hin1II CATG 5 cut(s) 153, 329, 364, 710, 899
Hin6I GCGC 1 cut(s) 937
HinP1I GCGC 1 cut(s) 937
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 5 cut(s) 142, 268, 734, 865, 1069
HpaII CCGG 1 cut(s) 962
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 28, 421
Hpy188I TCNGA 6 cut(s) 217, 273, 349, 1011, 1032, 1068
Hpy188III TCNNGA 6 cut(s) 172, 246, 265, 580, 639, 738
Hpy8I GTNNAC 2 cut(s) 28, 421
HpyAV CCTTC 3 cut(s) 128, 385, 919
HpyCH4III ACNGT 4 cut(s) 415, 434, 607, 783
HpyCH4IV ACGT 2 cut(s) 625, 1089
HpyF3I CTNAG 3 cut(s) 34, 637, 1094
HpySE526I ACGT 2 cut(s) 625, 1089
Hsp92II CATG 5 cut(s) 153, 329, 364, 710, 899
HspAI GCGC 1 cut(s) 937
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 6 cut(s) 69, 248, 261, 273, 811, 1006
LmnI GCTCC 5 cut(s) 159, 670, 710, 730, 1085
Lsp1109I GCAGC 2 cut(s) 539, 1089
MaeI CTAG 3 cut(s) 306, 522, 738
MaeII ACGT 2 cut(s) 625, 1089
MalI GATC 6 cut(s) 71, 250, 263, 275, 813, 1008
MbiI CCGCTC 1 cut(s) 33
MboI GATC 6 cut(s) 69, 248, 261, 273, 811, 1006
MboII GAAGA 3 cut(s) 175, 473, 738
MflI RGATCY 3 cut(s) 248, 261, 273
MhlI GDGCHC 1 cut(s) 470
MlyI GAGTC 2 cut(s) 874, 1063
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 6 cut(s) 265, 498, 525, 734, 814, 830
MroXI GAANNNNTTC 2 cut(s) 573, 783
MseI TTAA 4 cut(s) 507, 536, 693, 992
MspI CCGG 1 cut(s) 962
MspR9I CCNGG 2 cut(s) 158, 199
MvaI CCWGG 2 cut(s) 158, 199
NdeII GATC 6 cut(s) 69, 248, 261, 273, 811, 1006
NlaIII CATG 5 cut(s) 153, 329, 364, 710, 899
NlaIV GGNNCC 2 cut(s) 90, 155
NspI RCATGY 1 cut(s) 899
NspV TTCGAA 1 cut(s) 771
PdmI GAANNNNTTC 2 cut(s) 573, 783
PfeI GAWTC 3 cut(s) 142, 268, 734
PinAI ACCGGT 1 cut(s) 961
PkrI GCNGC 4 cut(s) 554, 798, 801, 1079
PleI GAGTC 2 cut(s) 873, 1063
PpsI GAGTC 2 cut(s) 873, 1063
Ppu21I YACGTR 2 cut(s) 626, 1090
PshBI ATTAAT 1 cut(s) 536
PsiI TTATAA 1 cut(s) 1026
Psp124BI GAGCTC 1 cut(s) 470
Psp6I CCWGG 2 cut(s) 156, 197
PspGI CCWGG 2 cut(s) 156, 197
PspN4I GGNNCC 2 cut(s) 90, 155
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 1 cut(s) 557
PsuI RGATCY 3 cut(s) 248, 261, 273
RsaI GTAC 5 cut(s) 283, 503, 628, 971, 1092
RsaNI GTAC 5 cut(s) 282, 502, 627, 970, 1091
SacI GAGCTC 1 cut(s) 470
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 4 cut(s) 507, 536, 693, 992
SatI GCNGC 4 cut(s) 553, 797, 800, 1078
Sau3AI GATC 6 cut(s) 69, 248, 261, 273, 811, 1006
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 2 cut(s) 874, 1063
ScrFI CCNGG 2 cut(s) 158, 199
SduI GDGCHC 1 cut(s) 470
SfcI CTRYAG 1 cut(s) 553
SfuI TTCGAA 1 cut(s) 771
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 805
SmoI CTYRAG 1 cut(s) 805
SsiI CCGC 3 cut(s) 31, 797, 800
SspI AATATT 2 cut(s) 301, 572
SspMI CTAG 3 cut(s) 306, 522, 738
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 2 cut(s) 156, 197
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 415, 434, 607, 783
TaiI ACGT 2 cut(s) 628, 1092
TaqI TCGA 4 cut(s) 27, 732, 765, 771
TatI WGTACW 3 cut(s) 281, 501, 969
TauI GCSGC 2 cut(s) 799, 802
TfiI GAWTC 3 cut(s) 142, 268, 734
Tru1I TTAA 4 cut(s) 507, 536, 693, 992
Tru9I TTAA 4 cut(s) 507, 536, 693, 992
TscAI CASTG 2 cut(s) 397, 798
TseI GCWGC 2 cut(s) 552, 1077
TspDTI ATGAA 1 cut(s) 938
TspGWI ACGGA 3 cut(s) 111, 221, 266
TspRI CASTG 2 cut(s) 397, 798
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 536
XapI RAATTY 3 cut(s) 905, 950, 987
XbaI TCTAGA 1 cut(s) 737
XceI RCATGY 1 cut(s) 899
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 2 cut(s) 573, 783
XspI CTAG 3 cut(s) 306, 522, 738
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.