FvH4_4g13903

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000298
Physical Location & Seq
Reverse (-)
17427212 .. 17429085
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13903.t1

Sequence Viewer

Length: 1020 bp
ATGTGGTTTGATAACTCTTGCAATGGTCTACTCTGCTTAGCTCCACCTAACGGCCATAGACCTTTGTATGTGTGCAATCCGATTTCGGGTGAGTTCATCACTGCTCCACCTCTTGGTTCTGAACGCAGAGATAACTCTTTCGTTGGACTTGGTTTTAATGCTGCTACCAATGAGTACAAGGAGTGTGGAGAGACACTGAAAAGCCTCCTTCCCTTCGACTCTTCACCGTTCAATGCGTTTCTACATGGAGCTCTTCATTGGACTAGAAAATATTGGACTCGTAGTGGTGATTTTATGTATCTATTCAACTTTGAAACAGAAAAGTTTGGAACAGTACCCCCACCTAGCCACTTTGCTCCAAAAGATTTGTGCAGCTTGGGAGTGTCAGAAGGTTGTCTCTTGTTATGTGGATATGGTGGTAATACTAGCAAATTTGAAATGTGGATCATGAGAGATTATGGAGTCCAAGAGTCTTGGACTAAGACTTTTGTTATTGAAAGCTTGAATCCAAGAAAAGCGTATGATCCAAATATGTTTTTGAGTAATGGTGAAATTCTAATGTCCTATGGTGATGGTGTCGGTGCTGTGGTCTGTTATAACCCAGAAACTAAGAGTATCAGGGAAACTAGTATTGCTCCCATTGAGTCCCAATTTGTTGTAACTGGCTACAGTCCATCATTTGTTTCACTCCACGATATTGCAAAGGGACAAATGGTGAAAAGGATAAGAAACAATGAGAATTTTAACAAGCTGTTTACTGAAGGAAGTATTACTGCTGCGGGTTCCGGAACATCAGCCCACCAGTGCACAAATCTAAACCCAGTTTCTTCCCCGCCTGGTGTTGAAAAGGCTCCTTGTTCACATAGTGTTACAACATCCTCTGCAACTAGCAATGAGCAGCTGGATTTCGCTATGAGGATCGGGACCAAGTGCGCTATATGTGCTGGGGAATTGGGTTATGTTTTCAGAGGCAAAGGGTTTGCAATGTGTCAAAAATGTTTTGATGCTAGTTCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

340

Amino Acids

37.11

Weight (kDa)

6.18

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 54 - 229 7.5e-11 F-box associated beta propeller domain
FBA_3 PF08268 78 - 218 6.1e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccB7I CCANNNNNTGG 1 cut(s) 113
AccI GTMKAC 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 785
AciI CCGC 2 cut(s) 779, 833
AclWI GGATC 3 cut(s) 452, 518, 926
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 3 cut(s) 431, 552, 739
AcuI CTGAAG 1 cut(s) 780
AdeI CACNNNGTG 1 cut(s) 866
AfaI GTAC 2 cut(s) 176, 336
AfiI CCNNNNNNNGG 3 cut(s) 50, 86, 113
AgsI TTSAA 7 cut(s) 232, 307, 314, 437, 497, 505, 845
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 1 cut(s) 835
AluBI AGCT 6 cut(s) 41, 251, 375, 501, 751, 901
AluI AGCT 6 cut(s) 41, 251, 375, 501, 751, 901
Alw21I GWGCWC 2 cut(s) 253, 809
Alw26I GTCTC 2 cut(s) 185, 401
Alw44I GTGCAC 1 cut(s) 805
AlwI GGATC 3 cut(s) 452, 518, 926
Aor13HI TCCGGA 1 cut(s) 785
AoxI GGCC 1 cut(s) 52
ApaLI GTGCAC 1 cut(s) 805
ApeKI GCWGC 4 cut(s) 161, 372, 776, 898
ApoI RAATTY 3 cut(s) 431, 552, 739
AspLEI GCGC 1 cut(s) 935
AspS9I GGNCC 1 cut(s) 924
AsuHPI GGTGA 6 cut(s) 101, 216, 299, 560, 581, 727
AvaII GGWCC 1 cut(s) 924
BaeGI GKGCMC 1 cut(s) 809
BanII GRGCYC 1 cut(s) 253
Bbv12I GWGCWC 2 cut(s) 253, 809
BbvI GCAGC 4 cut(s) 148, 384, 763, 910
BccI CCATC 2 cut(s) 566, 682
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 837
BcoDI GTCTC 2 cut(s) 185, 401
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 6 cut(s) 264, 345, 426, 627, 888, 1008
BfmI CTRYAG 1 cut(s) 667
BisI GCNGC 4 cut(s) 162, 373, 777, 899
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 4 cut(s) 163, 374, 778, 900
Bme1390I CCNGG 1 cut(s) 837
Bme18I GGWCC 1 cut(s) 924
BmgT120I GGNCC 1 cut(s) 924
BmiI GGNNCC 3 cut(s) 784, 852, 925
BmrFI CCNGG 1 cut(s) 837
BmrI ACTGGG 1 cut(s) 815
BmsI GCATC 1 cut(s) 994
BmuI ACTGGG 1 cut(s) 815
Bpu1102I GCTNAGC 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 785
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 86, 113
Bse1I ACTGG 3 cut(s) 667, 802, 821
Bse3DI GCAATG 3 cut(s) 28, 898, 990
BseAI TCCGGA 1 cut(s) 785
BseBI CCWGG 1 cut(s) 837
BseGI GGATG 1 cut(s) 875
BseLI CCNNNNNNNGG 3 cut(s) 50, 86, 113
BseMI GCAATG 3 cut(s) 28, 898, 990
BseNI ACTGG 3 cut(s) 667, 802, 821
BseSI GKGCMC 1 cut(s) 809
BseXI GCAGC 4 cut(s) 148, 384, 763, 910
BseYI CCCAGC 1 cut(s) 944
BsgI GTGCAG 1 cut(s) 391
BshFI GGCC 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 253, 809
BsiSI CCGG 1 cut(s) 786
BslFI GGGAC 3 cut(s) 631, 720, 937
BslI CCNNNNNNNGG 3 cut(s) 50, 86, 113
BsmAI GTCTC 2 cut(s) 185, 401
BsmFI GGGAC 3 cut(s) 631, 720, 937
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 2 cut(s) 253, 809
Bsp13I TCCGGA 1 cut(s) 785
Bsp143I GATC 3 cut(s) 444, 523, 918
Bsp1720I GCTNAGC 1 cut(s) 37
BspACI CCGC 2 cut(s) 779, 833
BspANI GGCC 1 cut(s) 54
BspEI TCCGGA 1 cut(s) 785
BspHI TCATGA 1 cut(s) 447
BspLI GGNNCC 3 cut(s) 784, 852, 925
BspPI GGATC 3 cut(s) 452, 518, 926
BspQI GCTCTTC 1 cut(s) 258
BsrDI GCAATG 3 cut(s) 28, 898, 990
BsrI ACTGG 3 cut(s) 667, 802, 821
BssMI GATC 3 cut(s) 444, 523, 918
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 3 cut(s) 228, 334, 671
Bst6I CTCTTC 2 cut(s) 226, 258
BstDEI CTNAG 3 cut(s) 37, 480, 609
BstF5I GGATG 1 cut(s) 875
BstHHI GCGC 1 cut(s) 935
BstKTI GATC 3 cut(s) 447, 526, 921
BstMAI GTCTC 2 cut(s) 185, 401
BstMBI GATC 3 cut(s) 444, 523, 918
BstMWI GCNNNNNNNGC 1 cut(s) 941
BstNI CCWGG 1 cut(s) 837
BstSCI CCNGG 1 cut(s) 835
BstSFI CTRYAG 1 cut(s) 667
BstSLI GKGCMC 1 cut(s) 809
BstV1I GCAGC 4 cut(s) 148, 384, 763, 910
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 875
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 3 cut(s) 99, 194, 809
CciI TCATGA 1 cut(s) 447
CfoI GCGC 1 cut(s) 935
Cfr13I GGNCC 1 cut(s) 924
Csp6I GTAC 2 cut(s) 175, 335
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 2 cut(s) 245, 448
CviQI GTAC 2 cut(s) 175, 335
DdeI CTNAG 3 cut(s) 37, 480, 609
DpnI GATC 3 cut(s) 446, 525, 920
DpnII GATC 3 cut(s) 444, 523, 918
DraIII CACNNNGTG 1 cut(s) 866
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 2 cut(s) 226, 258
EarI CTCTTC 2 cut(s) 226, 258
Ecl136II GAGCTC 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 924
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 780
EcoICRI GAGCTC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 253
FaeI CATG 2 cut(s) 248, 451
FaqI GGGAC 3 cut(s) 631, 720, 937
FatI CATG 2 cut(s) 244, 447
FauI CCCGC 2 cut(s) 772, 840
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 4 cut(s) 162, 373, 777, 899
FokI GGATG 1 cut(s) 862
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 4 cut(s) 162, 373, 777, 899
FspBI CTAG 6 cut(s) 264, 345, 426, 627, 888, 1008
GlaI GCGC 1 cut(s) 934
GluI GCNGC 4 cut(s) 162, 373, 777, 899
GsaI CCCAGC 1 cut(s) 948
HaeIII GGCC 1 cut(s) 54
HapII CCGG 1 cut(s) 786
HhaI GCGC 1 cut(s) 935
Hin1II CATG 2 cut(s) 248, 451
Hin6I GCGC 1 cut(s) 933
HinP1I GCGC 1 cut(s) 933
HindIII AAGCTT 1 cut(s) 499
HinfI GANTC 6 cut(s) 218, 277, 462, 470, 505, 644
HpaII CCGG 1 cut(s) 786
HphI GGTGA 6 cut(s) 101, 216, 299, 560, 581, 727
Hpy166II GTNNAC 4 cut(s) 29, 756, 807, 860
Hpy188I TCNGA 4 cut(s) 81, 121, 388, 968
Hpy188III TCNNGA 3 cut(s) 448, 786, 922
Hpy8I GTNNAC 4 cut(s) 29, 756, 807, 860
HpyAV CCTTC 4 cut(s) 218, 223, 383, 755
HpyCH4III ACNGT 3 cut(s) 228, 334, 671
HpyCH4V TGCA 7 cut(s) 21, 75, 372, 701, 807, 884, 983
HpyF10VI GCNNNNNNNGC 1 cut(s) 941
HpyF3I CTNAG 3 cut(s) 37, 480, 609
Hsp92II CATG 2 cut(s) 248, 451
HspAI GCGC 1 cut(s) 933
Kpn2I TCCGGA 1 cut(s) 785
Kzo9I GATC 3 cut(s) 444, 523, 918
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 6 cut(s) 46, 109, 248, 361, 640, 856
Lsp1109I GCAGC 4 cut(s) 148, 384, 763, 910
LweI GCATC 1 cut(s) 994
MaeI CTAG 6 cut(s) 264, 345, 426, 627, 888, 1008
MaeIII GTNAC 2 cut(s) 658, 868
MalI GATC 3 cut(s) 446, 525, 920
MboI GATC 3 cut(s) 444, 523, 918
MboII GAAGA 3 cut(s) 213, 245, 819
MhlI GDGCHC 2 cut(s) 253, 809
MluCI AATT 5 cut(s) 431, 552, 650, 739, 950
MlyI GAGTC 5 cut(s) 212, 271, 471, 479, 653
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 5 cut(s) 120, 215, 889, 909, 962
MroI TCCGGA 1 cut(s) 785
MseI TTAA 2 cut(s) 156, 744
MspA1I CMGCKG 1 cut(s) 901
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 1 cut(s) 837
MvaI CCWGG 1 cut(s) 837
MwoI GCNNNNNNNGC 1 cut(s) 941
NdeII GATC 3 cut(s) 444, 523, 918
NlaIII CATG 2 cut(s) 248, 451
NlaIV GGNNCC 3 cut(s) 784, 852, 925
PagI TCATGA 1 cut(s) 447
PciSI GCTCTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 505
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 4 cut(s) 163, 374, 778, 900
PleI GAGTC 5 cut(s) 212, 271, 470, 478, 652
PpsI GAGTC 5 cut(s) 212, 271, 470, 478, 652
PsiI TTATAA 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 835
PspFI CCCAGC 1 cut(s) 944
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 3 cut(s) 784, 852, 925
PspPI GGNCC 1 cut(s) 924
PvuII CAGCTG 1 cut(s) 901
RsaI GTAC 2 cut(s) 176, 336
RsaNI GTAC 2 cut(s) 175, 335
SacI GAGCTC 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 156, 744
SatI GCNGC 4 cut(s) 162, 373, 777, 899
Sau3AI GATC 3 cut(s) 444, 523, 918
Sau96I GGNCC 1 cut(s) 924
SchI GAGTC 5 cut(s) 212, 271, 471, 479, 653
ScrFI CCNGG 1 cut(s) 837
SduI GDGCHC 2 cut(s) 253, 809
SfaNI GCATC 1 cut(s) 994
SfcI CTRYAG 1 cut(s) 667
SinI GGWCC 1 cut(s) 924
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 5 cut(s) 431, 552, 650, 739, 950
SsiI CCGC 2 cut(s) 779, 833
SspI AATATT 1 cut(s) 272
SspMI CTAG 6 cut(s) 264, 345, 426, 627, 888, 1008
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 835
TaaI ACNGT 3 cut(s) 228, 334, 671
TaqI TCGA 1 cut(s) 216
TasI AATT 5 cut(s) 431, 552, 650, 739, 950
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 505
Tru1I TTAA 2 cut(s) 156, 744
Tru9I TTAA 2 cut(s) 156, 744
TscAI CASTG 3 cut(s) 106, 201, 809
TseI GCWGC 4 cut(s) 161, 372, 776, 898
TspDTI ATGAA 2 cut(s) 85, 245
TspRI CASTG 3 cut(s) 106, 201, 809
Van91I CCANNNNNTGG 1 cut(s) 113
VneI GTGCAC 1 cut(s) 805
VpaK11BI GGWCC 1 cut(s) 924
XapI RAATTY 3 cut(s) 431, 552, 739
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 6 cut(s) 264, 345, 426, 627, 888, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.