Rh4BG222600

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000298
Physical Location & Seq
Reverse (-)
38495387 .. 38495878
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG222600.1

Sequence Viewer

Length: 492 bp
ATGCCTAGAGAGAAGAATGGAAATCCTAAGAATCCCAGGAAAAGAGGAAAATGGAAACCCAAAGGTGCTTTCGATACCCAGCAACTTCCACAAGCTTTAGTAATTAATGGACATTCTATCAAGGTTTCCATCAAGGTCCTTTACAATTGTAGGTGCGTCTGCAAAGACTGGCTTCACATGATTTGTGACCGTCAATTTGCTAATGTACACTGTTTAAGATCATCCATCAGCATCTTGATCAGGACCAATCCCAGTGCGGAAGGAAAAAGGAAACTTGGATTAGTCCAGATAGAAAAATGTGCTGGCTCTCGTTTGCTAGTCGAAAGAATGAGGTTTGCTCCACAAAATAGCCTATGGCTAGCAGTTTCCACTGCTTCTGAGGTATTTCTGATAAATTCATGCAATGGATTAGTTTTTTTGGCTAGGGGGCATCTTGGAGATGGCTTGTATGTATGCAATCCAATTTTGGGTGTGCAATCCAATTTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

163

Amino Acids

18.2

Weight (kDa)

9.96

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 394
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 2 cut(s) 467, 486
AjnI CCWGG 1 cut(s) 35
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
ApoI RAATTY 1 cut(s) 394
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AseI ATTAAT 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 136, 243
AsuNHI GCTAGC 1 cut(s) 358
AvaII GGWCC 2 cut(s) 136, 243
BccI CCATC 3 cut(s) 137, 233, 434
BciT130I CCWGG 1 cut(s) 37
BclI TGATCA 1 cut(s) 237
BfaI CTAG 4 cut(s) 6, 317, 359, 423
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 2 cut(s) 136, 243
BmgT120I GGNCC 2 cut(s) 136, 243
BmrFI CCNGG 1 cut(s) 37
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 240, 439
BmtI GCTAGC 1 cut(s) 362
BmuI ACTGGG 1 cut(s) 246
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BsaJI CCNNGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 486
Bse1I ACTGG 2 cut(s) 173, 252
Bse3DI GCAATG 1 cut(s) 409
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 2 cut(s) 467, 486
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 173, 252
BseYI CCCAGC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 467, 486
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 2 cut(s) 218, 237
BspACI CCGC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 370
BspOI GCTAGC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 409
BsrGI TGTACA 1 cut(s) 205
BsrI ACTGG 2 cut(s) 173, 252
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 2 cut(s) 218, 237
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 191, 212
BstAUI TGTACA 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 304, 360
BstDEI CTNAG 2 cut(s) 27, 378
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 2 cut(s) 221, 240
BstMBI GATC 2 cut(s) 218, 237
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 221
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 3 cut(s) 208, 259, 369
Cac8I GCNNGC 2 cut(s) 304, 360
Cfr13I GGNCC 2 cut(s) 136, 243
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 206
CviAII CATG 2 cut(s) 178, 399
CviJI RGCY 7 cut(s) 95, 172, 306, 351, 358, 422, 444
CviKI_1 RGCY 7 cut(s) 95, 172, 306, 351, 358, 422, 444
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 27, 378
DpnI GATC 2 cut(s) 220, 239
DpnII GATC 2 cut(s) 218, 237
Eco47I GGWCC 2 cut(s) 136, 243
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 35
FaeI CATG 2 cut(s) 181, 402
FaiI YATR 5 cut(s) 179, 355, 400, 450, 454
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 2 cut(s) 177, 398
FbaI TGATCA 1 cut(s) 237
FokI GGATG 1 cut(s) 208
FspBI CTAG 4 cut(s) 6, 317, 359, 423
GsaI CCCAGC 1 cut(s) 82
HgaI GACGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 181, 402
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 379, 390
Hpy188III TCNNGA 3 cut(s) 235, 241, 286
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 2 cut(s) 191, 212
HpyCH4V TGCA 4 cut(s) 162, 402, 456, 475
HpyF3I CTNAG 2 cut(s) 27, 378
Hsp92II CATG 2 cut(s) 181, 402
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 2 cut(s) 218, 237
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 8 cut(s) 22, 49, 92, 154, 226, 265, 288, 299
LweI GCATC 2 cut(s) 240, 439
MaeI CTAG 4 cut(s) 6, 317, 359, 423
MaeIII GTNAC 1 cut(s) 185
MalI GATC 2 cut(s) 220, 239
MboI GATC 2 cut(s) 218, 237
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 145
MluCI AATT 6 cut(s) 102, 145, 194, 394, 462, 481
MnlI CCTC 3 cut(s) 38, 324, 373
MseI TTAA 2 cut(s) 105, 215
MspR9I CCNGG 1 cut(s) 37
MunI CAATTG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 37
NdeII GATC 2 cut(s) 218, 237
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 2 cut(s) 181, 402
NmuCI GTSAC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 1 cut(s) 35
PspPI GGNCC 2 cut(s) 136, 243
PspPPI RGGWCCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 105, 215
Sau3AI GATC 2 cut(s) 218, 237
Sau96I GGNCC 2 cut(s) 136, 243
ScrFI CCNGG 1 cut(s) 37
SetI ASST 7 cut(s) 67, 97, 126, 138, 155, 335, 384
SfaNI GCATC 2 cut(s) 240, 439
SinI GGWCC 2 cut(s) 136, 243
Sse9I AATT 6 cut(s) 102, 145, 194, 394, 462, 481
SsiI CCGC 1 cut(s) 257
SspMI CTAG 4 cut(s) 6, 317, 359, 423
StyD4I CCNGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 191, 212
TaqI TCGA 2 cut(s) 72, 321
TasI AATT 6 cut(s) 102, 145, 194, 394, 462, 481
TatI WGTACW 1 cut(s) 205
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 105, 215
Tru9I TTAA 2 cut(s) 105, 215
TscAI CASTG 3 cut(s) 215, 259, 376
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 387
TspRI CASTG 3 cut(s) 215, 259, 376
VpaK11BI GGWCC 2 cut(s) 136, 243
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 1 cut(s) 394
XspI CTAG 4 cut(s) 6, 317, 359, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.