Rorug04G0159100

F-box-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
27760384 .. 27763378
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0159100.1

Sequence Viewer

Length: 2970 bp
ATGGATAGTTCTGCAAACTTTCCCAACCCTGTCTATCATATCAATATTGCTTTCTGTTTCCTCCTTTTGTTTTTAGCCTCTTCATGTCTAAACACTAGTAAACAACTCTGCTTGGGAGATGATCTTCCAGTTGTGAAATGCATTGACAAAGAGAGAAGCGCGCTTCTCACCTTCAAGGCAGATCTTATCGATGTTTCGGGTAGGCTATCATCTTGGAAGGGTCAAAATAGTTGTCAATGGAAAGGGATTTCATGCAACAACCGCACTGGTCATGTTGAAAAGATGGACCTCCGCAATACAAGTCCAGCTCCATCTATTGATGCTGAAGACTGGGAGTTGGAGGCTTATTATGAGTCCTTTTTGGGGGGTAAGATAAATCCTTCTTTGCTTAGCTTGAAATATCTGAGTTACCTAGACTTGAGCTCGAATGACTTTCAAGGGCTTCAAATTCCCAAGTTCTTTGGTCAGCTTAAAAGTCTGAAGTATCTCAATGTCTCATCTTCATCATTTGAGGGACAGATTCCACCTCATCTTGGTAACCTATCAAACTTGAACTATCTTGACCTCAGTGCTGACTATTTATTGAAAATTTCTTCCACAAATTTGAATTGGCTTTCTCATCTCTCCTCTCTAAAATACCTCAGTCTGAATGAAGTGGACCTTAGCAATGCCGGAGCCAGTTGGCTACATGTTGTTAACATGCTTCCATCCATGCTAGAGTTACACTTGTCTAGATGCAACATTGAAAGCCTTCCACTTTCACTTCACACCATGAACCTCACATCACTTTTGATCCTTGATATGTCATTCAATGATTTTAAGTTTCCATTTCCAAAGTGGGTCCTTAATCTAACTAGCCTCAGAGAACTTCACCTGGCCATGAATTCTTTTAGCGGTCCCTTTCCCAATGATTTCGTTAACCTGAAATCGTTGGAAGAACTTGATTTATCTCTTAATGGCCTTCACGGTCGAATTCCCAAACTTTTTGGAAATCTTTGCAACCTAAAGACCTTAATTCTTGCGGACAACGCATTTGATCAGGGTATTCTGGAGTTTTTGGATGGTTTATCAGGTTGTGCAAATAACAAGTTGGAGTCACTAGACTTGTCTCGTAATAAGCTGGTAGGCGAATTGCCTGCCTCCTTAGGGATGCTCCCCCATTTGCAGTACCTTAACCTCTTTGATAATCATTTGAATGGATCCATTCCAAAAAGTTTGGGAGGACTCTCTGAGCTAGTTCATCTAGACCTGTCGGAGAACTCATTGGCAGGCTTTTTAACTGAAGCCCATTTCATAGATCTCACAAAATTAAAATACATTGCGCTGGGCAACAGAAGTAACCGCAACCTGCTAACTTCCATCATTTTCAATGTGGCTTATGAGTGGGTTCCTCCTTTCAAGCTTGACACCATTGCCATCAAGAACTGTCAAGTAGGTCCTGCCTTTTCACTATGGCTTCTCTCTCAAACTGAACTAGTATATGTCACTCTTAGCAATACAGGAATCTCGGATTCCATACCAGAGGAATGGTTCGTGAAAATATCTTCCCAAGTCCAATATTTGGATTTATCTCACAACCAAATTCGTGGAAAGCTTCCAGTCCAACTGATAGGTCCAAATTTAGTGACTCTAGATTTGAGACATAATCAATTCCACGGCTCACTCCCGCTTTGGTTGTGTAAGGAGGCTTACTACCTAAATCTTGCTAGTAATTCATTTTCCGGGCCAATTCCGTTAACTTTTGACCAACATTTTCCAAAATTGCAACAACTGCATCTCTATGAAAATAATTTGAATGGCACGATTCCATCCTCTGTTTGCAATATGCAGAAGTTGTTAATCTTTTCTCTAAGAAGCAACAACATTTCTGGAGATTTCCCTCAAGCATGGAGTATGTGGGGTGACATATACATTGTTGATGTTGGAGACAATCATCTCTCAGGGAATATTCCCAGTTCAATGGGTATCCCAAATTCACTTTTCATGTTGTCGATGAAGAACAACAAATTCGATGGTGAAATCCCTATGGCCTTGGGAAATTGCACCAACCTGAGGAGTATTGATCTTGGTGGTAATAGATTTACTGGAAACCTACCTTCATGGATAGGAACAAATGTATCCAAGGCGTTCATCTTACGACTGCCATCCAATTATCTAAGTGGACATATTCCCCAGCAATTGTGCAATCTTAACTACCTTCACCTCCTAGATCTTGGTCGTAACCACCTCTCAGGTACTATACCAAAGTGTTTGAATAATATGACTGCTCTAACAGATGTCAAGTTCAATGTTTATGCCTTATATCATGAGTATGAACAACAAATAATGGTGACCAAAGGAAGAGAACTCCAGTATAACACGACTCTGATGTGGGTAAAAAGCATAGATCTTTCCTCAAATAGTTTGGAAGGTGAAATCCCTGAAGAAATATGCGGTCTCTTTGCATTGGTTATCTTGAACCTGTCGATGAATCATCTAAGTGGAAATATTCCCTCGAAGATTGGAAACTTGCGGTCACTCGAATTCCTTGATCTCTCAGTCAACCACCTTTCAGGACGAATTCCTCAAAGTATTTCATCTTTAACCTATTTGTCTCACTTGAATTTGTCTTACAACGACTTGAGCGGAAGAATTCCTTTGGGCAACCAACTTCAAGCACTTGATGATTCAACCAATATTTATGGGGGCAATCCATCACTTTGTGGGGTTCCCCTTTTAAATAAGTGCTCAGGAGATGACACACCTCCACAACCCACTTTTCCTCGAGGGAAAAGACATGAAGATGATAAAAAGTTTGGTTTTTACGTCAGCGCAGTGCTTGGCTTTATCATAGGCTTTTGGGGTGTTTGTGGCACATTACTCATAAAGAAGTCGTGGAGGTATGCCTACTTTCAGTTCTTTGATAGCATCTACGATAAGGTAGCAGTGGCAGTTGCATTGAAAATGGCTCATTTCCAAAGGAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

989

Amino Acids

110.44

Weight (kDa)

6.22

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 49 - 86 8.7e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 135 - 193 6.4e-06 Leucine rich repeat
LRR_14 PF23598 198 - 439 5.8e-14 Leucine-rich repeat region
LRR_8 PF13855 491 - 551 1.7e-06 Leucine rich repeat
LRR_14 PF23598 802 - 871 1.1e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 2763
Acc36I ACCTGC 1 cut(s) 1356
AccB7I CCANNNNNTGG 1 cut(s) 1561
AccBSI CCGCTC 1 cut(s) 2625
AccII CGCG 1 cut(s) 161
AciI CCGC 9 cut(s) 262, 292, 894, 1022, 1342, 1667, 2433, 2512, 2625
AclWI GGATC 3 cut(s) 787, 1194, 1207
AcoI YGGCCR 1 cut(s) 876
AcuI CTGAAG 4 cut(s) 345, 500, 1302, 2442
AdeI CACNNNGTG 1 cut(s) 2702
AfaI GTAC 2 cut(s) 1169, 2236
AfiI CCNNNNNNNGG 5 cut(s) 363, 533, 1146, 1561, 2052
AflIII ACRYGT 1 cut(s) 688
AhlI ACTAGT 2 cut(s) 95, 1474
AjnI CCWGG 1 cut(s) 873
AluBI AGCT 8 cut(s) 308, 393, 423, 469, 1120, 1234, 1402, 1594
AluI AGCT 8 cut(s) 308, 393, 423, 469, 1120, 1234, 1402, 1594
Alw21I GWGCWC 2 cut(s) 425, 2729
Alw26I GTCTC 6 cut(s) 499, 1113, 1633, 1920, 2441, 2598
AlwI GGATC 3 cut(s) 787, 1194, 1207
Ama87I CYCGRG 1 cut(s) 2763
AoxI GGCC 4 cut(s) 876, 958, 1724, 2028
ArsI GACNNNNNNTTYG 6 cut(s) 217, 249, 1016, 1048, 1618, 1650
Asp700I GAANNNNTTC 1 cut(s) 750
AspLEI GCGC 4 cut(s) 161, 163, 1324, 2813
AspS9I GGNCC 7 cut(s) 286, 658, 841, 896, 1436, 1613, 1724
AsuC2I CCSGG 1 cut(s) 1723
AsuHPI GGTGA 7 cut(s) 160, 863, 1913, 2027, 2192, 2341, 2423
AvaI CYCGRG 1 cut(s) 2763
AvaII GGWCC 6 cut(s) 286, 658, 841, 896, 1436, 1613
AxyI CCTNAGG 2 cut(s) 1144, 2051
BaeI ACNNNNGTAYC 2 cut(s) 2100, 2133
BalI TGGCCA 1 cut(s) 878
BamHI GGATCC 1 cut(s) 1199
BanII GRGCYC 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 2 cut(s) 425, 2729
BceAI ACGGC 1 cut(s) 1672
BcgI CGANNNNNNTGC 2 cut(s) 1118, 1152
BciT130I CCWGG 1 cut(s) 875
BciVI GTATCC 2 cut(s) 1976, 2128
BclI TGATCA 1 cut(s) 1036
BcnI CCSGG 1 cut(s) 1723
BcoDI GTCTC 6 cut(s) 499, 1113, 1633, 1920, 2441, 2598
BcuI ACTAGT 2 cut(s) 95, 1474
BfuAI ACCTGC 1 cut(s) 1356
BfuI GTATCC 2 cut(s) 1976, 2128
BglII AGATCT 4 cut(s) 181, 1297, 2209, 2386
BlpI GCTNAGC 1 cut(s) 389
Bme1390I CCNGG 2 cut(s) 875, 1723
Bme18I GGWCC 6 cut(s) 286, 658, 841, 896, 1436, 1613
BmeT110I CYCGRG 1 cut(s) 2763
BmgT120I GGNCC 7 cut(s) 286, 658, 841, 896, 1436, 1613, 1724
BmiI GGNNCC 6 cut(s) 676, 842, 898, 1201, 1389, 2709
BmrFI CCNGG 2 cut(s) 875, 1723
BmrI ACTGGG 2 cut(s) 340, 1947
BmsI GCATC 5 cut(s) 310, 725, 1140, 1783, 2916
BmuI ACTGGG 2 cut(s) 340, 1947
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 3 cut(s) 1070, 1890, 2333
Bpu10I CCTNAGC 2 cut(s) 662, 2728
Bpu1102I GCTNAGC 1 cut(s) 389
BpuEI CTTGAG 3 cut(s) 439, 1866, 2641
BpuMI CCSGG 1 cut(s) 1723
Bsa29I ATCGAT 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 2441
BsaJI CCNNGG 3 cut(s) 1654, 2031, 2121
Bsc4I CCNNNNNNNGG 5 cut(s) 363, 533, 1146, 1561, 2052
Bse1I ACTGG 8 cut(s) 128, 271, 335, 678, 1598, 1953, 2089, 2350
Bse21I CCTNAGG 2 cut(s) 1144, 2051
Bse3DI GCAATG 3 cut(s) 673, 1317, 1410
BseBI CCWGG 1 cut(s) 875
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 1654, 2031, 2121
BseGI GGATG 5 cut(s) 707, 1066, 1155, 1808, 2144
BseLI CCNNNNNNNGG 5 cut(s) 363, 533, 1146, 1561, 2052
BseMI GCAATG 3 cut(s) 673, 1317, 1410
BseNI ACTGG 8 cut(s) 128, 271, 335, 678, 1598, 1953, 2089, 2350
BsePI GCGCGC 1 cut(s) 159
BseRI GAGGAG 2 cut(s) 616, 2068
BseYI CCCAGC 2 cut(s) 1324, 2172
Bsh1236I CGCG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 970
BshFI GGCC 4 cut(s) 878, 960, 1726, 2030
BshVI ATCGAT 1 cut(s) 189
BsiEI CGRYCG 1 cut(s) 970
BsiHKAI GWGCWC 2 cut(s) 425, 2729
BsiHKCI CYCGRG 1 cut(s) 2763
BsiSI CCGG 2 cut(s) 672, 1722
BslFI GGGAC 2 cut(s) 528, 882
BslI CCNNNNNNNGG 5 cut(s) 363, 533, 1146, 1561, 2052
BsmAI GTCTC 6 cut(s) 499, 1113, 1633, 1920, 2441, 2598
BsmFI GGGAC 2 cut(s) 528, 882
BsnI GGCC 4 cut(s) 878, 960, 1726, 2030
Bso31I GGTCTC 1 cut(s) 2441
BsoBI CYCGRG 1 cut(s) 2763
Bsp1286I GDGCHC 2 cut(s) 425, 2729
Bsp1720I GCTNAGC 1 cut(s) 389
BspACI CCGC 9 cut(s) 262, 292, 894, 1022, 1342, 1667, 2433, 2512, 2625
BspANI GGCC 4 cut(s) 878, 960, 1726, 2030
BspDI ATCGAT 1 cut(s) 189
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 2305
BspLI GGNNCC 6 cut(s) 676, 842, 898, 1201, 1389, 2709
BspMI ACCTGC 1 cut(s) 1356
BspPI GGATC 3 cut(s) 787, 1194, 1207
BspTNI GGTCTC 1 cut(s) 2441
BsrBI CCGCTC 1 cut(s) 2625
BsrDI GCAATG 3 cut(s) 673, 1317, 1410
BsrI ACTGG 8 cut(s) 128, 271, 335, 678, 1598, 1953, 2089, 2350
BssECI CCNNGG 3 cut(s) 1654, 2031, 2121
BssHII GCGCGC 1 cut(s) 159
BssT1I CCWWGG 2 cut(s) 2031, 2121
Bst2UI CCWGG 1 cut(s) 875
Bst4CI ACNGT 2 cut(s) 968, 1427
Bst6I CTCTTC 2 cut(s) 85, 2335
BstAPI GCANNNNNTGC 1 cut(s) 1771
BstC8I GCNNGC 3 cut(s) 161, 1137, 1270
BstDSI CCRYGG 1 cut(s) 1654
BstEII GGTNACC 2 cut(s) 536, 2329
BstF5I GGATG 5 cut(s) 707, 1066, 1155, 1808, 2144
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 4 cut(s) 161, 163, 1324, 2813
BstMAI GTCTC 6 cut(s) 499, 1113, 1633, 1920, 2441, 2598
BstMCI CGRYCG 1 cut(s) 970
BstMWI GCNNNNNNNGC 3 cut(s) 261, 1028, 1771
BstNI CCWGG 1 cut(s) 875
BstNSI RCATGY 2 cut(s) 692, 703
BstPI GGTNACC 2 cut(s) 536, 2329
BstSCI CCNGG 2 cut(s) 873, 1721
BstUI CGCG 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 5 cut(s) 181, 1199, 1297, 2209, 2386
BstXI CCANNNNNNTGG 3 cut(s) 1527, 1586, 1960
BstYI RGATCY 5 cut(s) 181, 1199, 1297, 2209, 2386
Bsu15I ATCGAT 1 cut(s) 189
Bsu36I CCTNAGG 2 cut(s) 1144, 2051
BsuI GTATCC 2 cut(s) 1976, 2128
BsuRI GGCC 4 cut(s) 878, 960, 1726, 2030
BsuTUI ATCGAT 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 1654
BtsCI GGATG 5 cut(s) 707, 1066, 1155, 1808, 2144
BtsI GCAGTG 2 cut(s) 2820, 2931
BtsIMutI CAGTG 4 cut(s) 264, 574, 2820, 2931
BveI ACCTGC 1 cut(s) 1356
Cac8I GCNNGC 3 cut(s) 161, 1137, 1270
CciI TCATGA 1 cut(s) 2305
CfoI GCGC 4 cut(s) 161, 163, 1324, 2813
Cfr13I GGNCC 7 cut(s) 286, 658, 841, 896, 1436, 1613, 1724
ClaI ATCGAT 1 cut(s) 189
Csp6I GTAC 2 cut(s) 1168, 2235
CviQI GTAC 2 cut(s) 1168, 2235
DraI TTTAAA 1 cut(s) 2718
DraIII CACNNNGTG 1 cut(s) 2702
EaeI YGGCCR 1 cut(s) 876
Eam1104I CTCTTC 2 cut(s) 85, 2335
EarI CTCTTC 2 cut(s) 85, 2335
Ecl136II GAGCTC 1 cut(s) 423
Eco130I CCWWGG 2 cut(s) 2031, 2121
Eco24I GRGCYC 1 cut(s) 425
Eco31I GGTCTC 1 cut(s) 2441
Eco47I GGWCC 6 cut(s) 286, 658, 841, 896, 1436, 1613
Eco53kI GAGCTC 1 cut(s) 423
Eco57I CTGAAG 4 cut(s) 345, 500, 1302, 2442
Eco81I CCTNAGG 2 cut(s) 1144, 2051
Eco88I CYCGRG 1 cut(s) 2763
Eco91I GGTNACC 2 cut(s) 536, 2329
EcoICRI GAGCTC 1 cut(s) 423
EcoO109I RGGNCCY 2 cut(s) 841, 1436
EcoO65I GGTNACC 2 cut(s) 536, 2329
EcoRI GAATTC 5 cut(s) 883, 972, 2522, 2559, 2631
EcoRII CCWGG 1 cut(s) 873
EcoT14I CCWWGG 2 cut(s) 2031, 2121
EcoT22I ATGCAT 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 425
ErhI CCWWGG 2 cut(s) 2031, 2121
FalI AAGNNNNNCTT 4 cut(s) 645, 677, 2620, 2652
FaqI GGGAC 2 cut(s) 528, 882
FauI CCCGC 1 cut(s) 1674
FbaI TGATCA 1 cut(s) 1036
FokI GGATG 5 cut(s) 694, 1073, 1162, 1795, 2131
FriOI GRGCYC 1 cut(s) 425
GlaI GCGC 4 cut(s) 160, 162, 1323, 2812
GsaI CCCAGC 2 cut(s) 1328, 2176
GsuI CTGGAG 3 cut(s) 1070, 1890, 2333
HaeIII GGCC 4 cut(s) 878, 960, 1726, 2030
HapII CCGG 2 cut(s) 672, 1722
HhaI GCGC 4 cut(s) 161, 163, 1324, 2813
Hin6I GCGC 4 cut(s) 159, 161, 1322, 2811
HinP1I GCGC 4 cut(s) 159, 161, 1322, 2811
HincII GTYRAC 4 cut(s) 697, 919, 1737, 2542
HindII GTYRAC 4 cut(s) 697, 919, 1737, 2542
HindIII AAGCTT 2 cut(s) 1400, 1592
HpaI GTTAAC 3 cut(s) 697, 919, 1737
HpaII CCGG 2 cut(s) 672, 1722
HphI GGTGA 7 cut(s) 160, 863, 1913, 2027, 2192, 2341, 2423
Hpy166II GTNNAC 7 cut(s) 101, 658, 697, 919, 1737, 2162, 2542
Hpy188I TCNGA 8 cut(s) 405, 480, 648, 863, 1231, 1255, 1510, 2367
Hpy8I GTNNAC 7 cut(s) 101, 658, 697, 919, 1737, 2162, 2542
HpyAV CCTTC 8 cut(s) 181, 211, 390, 761, 971, 2106, 2207, 2402
HpyCH4III ACNGT 2 cut(s) 968, 1427
HpyCH4IV ACGT 1 cut(s) 2805
HpyF10VI GCNNNNNNNGC 3 cut(s) 261, 1028, 1771
HpySE526I ACGT 1 cut(s) 2805
HspAI GCGC 4 cut(s) 159, 161, 1322, 2811
Ksp22I TGATCA 1 cut(s) 1036
KspAI GTTAAC 3 cut(s) 697, 919, 1737
LmnI GCTCC 3 cut(s) 313, 674, 1158
LweI GCATC 5 cut(s) 310, 725, 1140, 1783, 2916
MaeII ACGT 1 cut(s) 2805
MbiI CCGCTC 1 cut(s) 2625
MfeI CAATTG 1 cut(s) 2177
MflI RGATCY 5 cut(s) 181, 1199, 1297, 2209, 2386
MhlI GDGCHC 2 cut(s) 425, 2729
MlsI TGGCCA 1 cut(s) 878
MluNI TGGCCA 1 cut(s) 878
MlyI GAGTC 5 cut(s) 362, 1103, 1218, 1621, 2356
MmeI TCCRAC 6 cut(s) 318, 912, 1071, 1233, 1627, 1903
Mox20I TGGCCA 1 cut(s) 878
Mph1103I ATGCAT 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 750
MscI TGGCCA 1 cut(s) 878
MslI CAYNNNNRTG 5 cut(s) 1194, 1779, 2310, 2478, 2781
Msp20I TGGCCA 1 cut(s) 878
MspI CCGG 2 cut(s) 672, 1722
MspR9I CCNGG 2 cut(s) 875, 1723
MunI CAATTG 1 cut(s) 2177
MvaI CCWGG 1 cut(s) 875
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 3 cut(s) 261, 1028, 1771
NciI CCSGG 1 cut(s) 1723
NlaIV GGNNCC 6 cut(s) 676, 842, 898, 1201, 1389, 2709
NmuCI GTSAC 6 cut(s) 1095, 1483, 1624, 1901, 2329, 2514
NsiI ATGCAT 1 cut(s) 143
NspI RCATGY 2 cut(s) 692, 703
PaeR7I CTCGAG 1 cut(s) 2763
PagI TCATGA 1 cut(s) 2305
PauI GCGCGC 1 cut(s) 159
PciI ACATGT 1 cut(s) 688
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 6 cut(s) 520, 1503, 1511, 1804, 2470, 2666
PflMI CCANNNNNTGG 1 cut(s) 1561
PleI GAGTC 5 cut(s) 361, 1102, 1218, 1621, 2356
PpsI GAGTC 5 cut(s) 361, 1102, 1218, 1621, 2356
PpuMI RGGWCCY 2 cut(s) 841, 1436
PscI ACATGT 1 cut(s) 688
Psp124BI GAGCTC 1 cut(s) 425
Psp5II RGGWCCY 2 cut(s) 841, 1436
Psp6I CCWGG 1 cut(s) 873
PspEI GGTNACC 2 cut(s) 536, 2329
PspFI CCCAGC 2 cut(s) 1324, 2172
PspGI CCWGG 1 cut(s) 873
PspN4I GGNNCC 6 cut(s) 676, 842, 898, 1201, 1389, 2709
PspPI GGNCC 7 cut(s) 286, 658, 841, 896, 1436, 1613, 1724
PspPPI RGGWCCY 2 cut(s) 841, 1436
PspXI VCTCGAGB 1 cut(s) 2763
PsuI RGATCY 5 cut(s) 181, 1199, 1297, 2209, 2386
PteI GCGCGC 1 cut(s) 159
RsaI GTAC 2 cut(s) 1169, 2236
RsaNI GTAC 2 cut(s) 1168, 2235
RseI CAYNNNNRTG 5 cut(s) 1194, 1779, 2310, 2478, 2781
SacI GAGCTC 1 cut(s) 425
Sau96I GGNCC 7 cut(s) 286, 658, 841, 896, 1436, 1613, 1724
SchI GAGTC 5 cut(s) 362, 1103, 1218, 1621, 2356
ScrFI CCNGG 2 cut(s) 875, 1723
SduI GDGCHC 2 cut(s) 425, 2729
SfaNI GCATC 5 cut(s) 310, 725, 1140, 1783, 2916
Sfr274I CTCGAG 1 cut(s) 2763
SinI GGWCC 6 cut(s) 286, 658, 841, 896, 1436, 1613
SlaI CTCGAG 1 cut(s) 2763
SmiMI CAYNNNNRTG 5 cut(s) 1194, 1779, 2310, 2478, 2781
SmlI CTYRAG 4 cut(s) 418, 1881, 2620, 2763
SmoI CTYRAG 4 cut(s) 418, 1881, 2620, 2763
SpeI ACTAGT 2 cut(s) 95, 1474
SsiI CCGC 9 cut(s) 262, 292, 894, 1022, 1342, 1667, 2433, 2512, 2625
SspI AATATT 5 cut(s) 46, 1559, 1948, 2488, 2677
SstI GAGCTC 1 cut(s) 425
StyD4I CCNGG 2 cut(s) 873, 1721
StyI CCWWGG 2 cut(s) 2031, 2121
TaaI ACNGT 2 cut(s) 968, 1427
TaiI ACGT 1 cut(s) 2808
TaqI TCGA 9 cut(s) 189, 425, 970, 1991, 2010, 2465, 2495, 2520, 2764
TfiI GAWTC 6 cut(s) 520, 1503, 1511, 1804, 2470, 2666
TscAI CASTG 4 cut(s) 271, 574, 2820, 2931
TseFI GTSAC 6 cut(s) 1095, 1483, 1624, 1901, 2329, 2514
Tsp45I GTSAC 6 cut(s) 1095, 1483, 1624, 1901, 2329, 2514
TspGWI ACGGA 1 cut(s) 1722
TspRI CASTG 4 cut(s) 271, 574, 2820, 2931
Van91I CCANNNNNTGG 1 cut(s) 1561
VpaK11BI GGWCC 6 cut(s) 286, 658, 841, 896, 1436, 1613
XbaI TCTAGA 3 cut(s) 731, 1243, 1630
XceI RCATGY 2 cut(s) 692, 703
XcmI CCANNNNNNNNNTGG 1 cut(s) 834
XhoI CTCGAG 1 cut(s) 2763
XmnI GAANNNNTTC 1 cut(s) 750
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.