Rw4G019170

peptide-methionine (R)-S-oxide reductase activity

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
42346385 .. 42349154
2770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019170.1

Sequence Viewer

Length: 1161 bp
ATGAATCCAAGGAAAAGACAAGCAGTGATCAGATGCATCAGAGCAAAAGGAGAACAATGGCAGCCCACAGGTCCTTGCCGAATCCGGCAACTTCCAACGGCTTTAGTCATGGAAATTCTCTCCAGGCTCACTCCCAACACTCTCATCAACTGCAGGTGCGTTTGCAAATCATGGCTTTTTGTGATTTCCCACCCTCATTTCAATCGTCTCCTCCATTCAAGATCCCCAATTGGCATCTTGATCCAGACATTTCCTCATCCCTTCAGATGGAAAGGGAGGATACTAGAGTTCACCCAGATAGTAGAATGTGCTGCTGCTCCTGATTTGCAGCTAGAGAAGATGAGTTTTCGTCCCAAAGTTAGCATACCGCTTATCGGTGACAAAGTGGGTTTAATAACGAAATGTGGTTTGTTAAACTCCTGCAATGGTTTACTTTGCTTGTCTGGACCGAAAAGAAATGATATCTTGTATGTGTGTAATCCAATTTTGGGTGAGTTCATCACCACACCACCTCTTAAAAATGGTATAGACTACTTCGCTTTTAATGGACTTGGTTTTAGTGCTGCTACCAATGAGTACAAAGTGTTAAAGACTTCCCTGGCGAATCAGGCTCAGATATACACCATTGGTACTGGAGTTTGGAGAGACATTGGACAGGCTCCTTTTGGCATTGTGCGGTTTCCGTTTAATGCTTTTCTACATGGAGCATTTCATTGGGCTACCCAGTATTGGGAGGGTTATGAGTTTATGCATTCCTTCAACTTTGAAACAGAAAAGTTTCAAACAATACCCCCACCTAGCCACTTTGCACCGAAAAGGAAACTTAAAGAGAGGGTAACCTTGGGAGTGCTGGGAGGTTGTCTCCTCTTATGTGCCTTTGAAGATGACAGTAGCAAATTTGATATGTGGGTTATGAAGGATTATGGCGTCCAAGAGTCTTGGACAAAGTTTCTTGTTATTGAAAACTTGAGCCCCACAAGAAGTTTGACACGTGCAGACTATGAACCAATTATGTTCTTGAGTAATGGTGAAATCTTAATGTCTTATGGTGCTTCTGCTGTGGTTTGTTATAATCCAGAAACAAAGAGTTTCAAGGAAACTAGTATTGGTCCGATTGGGTTAGGATTTGTCGCTACGGCTTATAGTCCATCCTTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

386

Amino Acids

43.54

Weight (kDa)

9.11

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 28 - 66 1.9e-08 F-box-like
F-box PF00646 30 - 69 4.6e-09 F-box domain
FBA_3 PF08268 137 - 370 4.4e-22 F-box associated beta propeller domain
FBA_1 PF07734 139 - 358 4.3e-25 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1071
AarI CACCTGC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 144
AciI CCGC 2 cut(s) 368, 676
AclWI GGATC 2 cut(s) 216, 235
AcsI RAATTY 2 cut(s) 114, 896
AcuI CTGAAG 1 cut(s) 247
AcvI CACGTG 1 cut(s) 992
AcyI GRCGYC 1 cut(s) 927
AfaI GTAC 2 cut(s) 578, 631
AfiI CCNNNNNNNGG 5 cut(s) 267, 374, 488, 729, 730
AflIII ACRYGT 1 cut(s) 989
AgsI TTSAA 8 cut(s) 202, 219, 760, 767, 782, 881, 962, 1093
AhlI ACTAGT 1 cut(s) 1100
AjnI CCWGG 2 cut(s) 122, 597
AjuI GAANNNNNNNTTGG 2 cut(s) 1089, 1121
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw26I GTCTC 3 cut(s) 212, 639, 866
AlwI GGATC 2 cut(s) 216, 235
ApeKI GCWGC 5 cut(s) 61, 311, 314, 328, 563
ApoI RAATTY 2 cut(s) 114, 896
Asp700I GAANNNNTTC 1 cut(s) 777
AspS9I GGNCC 3 cut(s) 71, 446, 1109
AsuHPI GGTGA 5 cut(s) 283, 389, 493, 503, 1040
AvaII GGWCC 3 cut(s) 71, 446, 1109
BaeI ACNNNNGTAYC 4 cut(s) 272, 305, 621, 654
BanII GRGCYC 1 cut(s) 974
BbrPI CACGTG 1 cut(s) 992
BbvI GCAGC 5 cut(s) 73, 298, 301, 340, 550
BccI CCATC 2 cut(s) 261, 1156
BceAI ACGGC 2 cut(s) 114, 1152
BciT130I CCWGG 2 cut(s) 124, 599
BciVI GTATCC 1 cut(s) 273
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 3 cut(s) 212, 639, 866
BcuI ACTAGT 1 cut(s) 1100
BfaI CTAG 5 cut(s) 284, 332, 798, 1101, 1159
BfmI CTRYAG 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 144
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 5 cut(s) 62, 312, 315, 329, 564
BlsI GCNGC 5 cut(s) 63, 313, 316, 330, 565
Bme1390I CCNGG 2 cut(s) 124, 599
Bme18I GGWCC 3 cut(s) 71, 446, 1109
BmgT120I GGNCC 3 cut(s) 71, 446, 1109
BmiI GGNNCC 1 cut(s) 660
BmrFI CCNGG 2 cut(s) 124, 599
BmrI ACTGGG 1 cut(s) 718
BmsI GCATC 3 cut(s) 23, 45, 243
BmuI ACTGGG 1 cut(s) 718
BplI GAGNNNNNCTC 2 cut(s) 846, 878
BpmI CTGGAG 2 cut(s) 106, 654
BpuEI CTTGAG 2 cut(s) 988, 1039
BsaAI YACGTR 1 cut(s) 992
BsaHI GRCGYC 1 cut(s) 927
BsaJI CCNNGG 3 cut(s) 8, 597, 840
Bsc4I CCNNNNNNNGG 5 cut(s) 267, 374, 488, 729, 730
Bse1I ACTGG 2 cut(s) 637, 724
Bse3DI GCAATG 1 cut(s) 430
BseBI CCWGG 2 cut(s) 124, 599
BseDI CCNNGG 3 cut(s) 8, 597, 840
BseGI GGATG 2 cut(s) 256, 1148
BseLI CCNNNNNNNGG 5 cut(s) 267, 374, 488, 729, 730
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 626
BseNI ACTGG 2 cut(s) 637, 724
BseRI GAGGAG 2 cut(s) 200, 854
BseXI GCAGC 5 cut(s) 73, 298, 301, 340, 550
BseYI CCCAGC 1 cut(s) 850
BsgI GTGCAG 1 cut(s) 1014
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 5 cut(s) 267, 374, 488, 729, 730
BsmAI GTCTC 3 cut(s) 212, 639, 866
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 1 cut(s) 751
Bsp1286I GDGCHC 1 cut(s) 974
Bsp143I GATC 3 cut(s) 27, 221, 240
BspACI CCGC 2 cut(s) 368, 676
BspCNI CTCAG 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 660
BspMAI CTGCAG 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 2 cut(s) 216, 235
BsrDI GCAATG 1 cut(s) 430
BsrI ACTGG 2 cut(s) 637, 724
BssECI CCNNGG 3 cut(s) 8, 597, 840
BssMI GATC 3 cut(s) 27, 221, 240
BssNI GRCGYC 1 cut(s) 927
BssT1I CCWWGG 2 cut(s) 8, 840
Bst2UI CCWGG 2 cut(s) 124, 599
Bst4CI ACNGT 1 cut(s) 890
BstACI GRCGYC 1 cut(s) 927
BstBAI YACGTR 1 cut(s) 992
BstDEI CTNAG 1 cut(s) 612
BstEII GGTNACC 1 cut(s) 835
BstF5I GGATG 2 cut(s) 256, 1148
BstKTI GATC 3 cut(s) 30, 224, 243
BstMAI GTCTC 3 cut(s) 212, 639, 866
BstMBI GATC 3 cut(s) 27, 221, 240
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 2 cut(s) 124, 599
BstPI GGTNACC 1 cut(s) 835
BstSCI CCNGG 2 cut(s) 122, 597
BstSFI CTRYAG 1 cut(s) 151
BstV1I GCAGC 5 cut(s) 73, 298, 301, 340, 550
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuI GTATCC 1 cut(s) 273
BtsCI GGATG 2 cut(s) 256, 1148
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 144
Cfr13I GGNCC 3 cut(s) 71, 446, 1109
CseI GACGC 1 cut(s) 916
Csp6I GTAC 2 cut(s) 577, 630
CviAII CATG 3 cut(s) 109, 171, 701
CviQI GTAC 2 cut(s) 577, 630
DdeI CTNAG 1 cut(s) 612
DpnI GATC 3 cut(s) 29, 223, 242
DpnII GATC 3 cut(s) 27, 221, 240
Eco130I CCWWGG 2 cut(s) 8, 840
Eco24I GRGCYC 1 cut(s) 974
Eco32I GATATC 1 cut(s) 463
Eco47I GGWCC 3 cut(s) 71, 446, 1109
Eco57I CTGAAG 1 cut(s) 247
Eco72I CACGTG 1 cut(s) 992
Eco91I GGTNACC 1 cut(s) 835
EcoO109I RGGNCCY 1 cut(s) 71
EcoO65I GGTNACC 1 cut(s) 835
EcoRII CCWGG 2 cut(s) 122, 597
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 2 cut(s) 8, 840
EcoT22I ATGCAT 2 cut(s) 38, 753
EcoT38I GRGCYC 1 cut(s) 974
ErhI CCWWGG 2 cut(s) 8, 840
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 3 cut(s) 112, 174, 704
FaqI GGGAC 1 cut(s) 336
FatI CATG 3 cut(s) 108, 170, 700
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 5 cut(s) 62, 312, 315, 329, 564
FokI GGATG 2 cut(s) 243, 1135
FriOI GRGCYC 1 cut(s) 974
Fsp4HI GCNGC 5 cut(s) 62, 312, 315, 329, 564
FspBI CTAG 5 cut(s) 284, 332, 798, 1101, 1159
GluI GCNGC 5 cut(s) 62, 312, 315, 329, 564
GsaI CCCAGC 1 cut(s) 854
GsuI CTGGAG 2 cut(s) 106, 654
HapII CCGG 1 cut(s) 85
HgaI GACGC 1 cut(s) 916
Hin1I GRCGYC 1 cut(s) 927
Hin1II CATG 3 cut(s) 112, 174, 704
HinfI GANTC 4 cut(s) 4, 81, 604, 935
HpaII CCGG 1 cut(s) 85
HphI GGTGA 5 cut(s) 283, 389, 493, 503, 1040
Hpy166II GTNNAC 2 cut(s) 291, 431
Hpy188I TCNGA 5 cut(s) 32, 41, 266, 615, 1113
Hpy188III TCNNGA 7 cut(s) 219, 238, 244, 320, 444, 1018, 1076
Hpy8I GTNNAC 2 cut(s) 291, 431
HpyAV CCTTC 3 cut(s) 271, 766, 910
HpyCH4III ACNGT 1 cut(s) 890
HpyCH4IV ACGT 1 cut(s) 991
HpyCH4V TGCA 8 cut(s) 36, 153, 165, 328, 423, 751, 809, 995
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 1 cut(s) 612
HpySE526I ACGT 1 cut(s) 991
Hsp92I GRCGYC 1 cut(s) 927
Hsp92II CATG 3 cut(s) 112, 174, 704
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 3 cut(s) 27, 221, 240
LmnI GCTCC 3 cut(s) 322, 664, 704
Lsp1109I GCAGC 5 cut(s) 73, 298, 301, 340, 550
LweI GCATC 3 cut(s) 23, 45, 243
MaeI CTAG 5 cut(s) 284, 332, 798, 1101, 1159
MaeII ACGT 1 cut(s) 991
MaeIII GTNAC 2 cut(s) 377, 835
MalI GATC 3 cut(s) 29, 223, 242
MboI GATC 3 cut(s) 27, 221, 240
MboII GAAGA 2 cut(s) 349, 893
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 974
MluCI AATT 5 cut(s) 114, 228, 483, 896, 1008
MlyI GAGTC 1 cut(s) 944
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 9 cut(s) 204, 221, 264, 270, 522, 727, 825, 848, 875
Mph1103I ATGCAT 2 cut(s) 38, 753
MroXI GAANNNNTTC 1 cut(s) 777
MseI TTAA 8 cut(s) 392, 413, 516, 543, 587, 687, 825, 1037
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 2 cut(s) 124, 599
MunI CAATTG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 751
MvaI CCWGG 2 cut(s) 124, 599
MwoI GCNNNNNNNGC 1 cut(s) 608
NdeII GATC 3 cut(s) 27, 221, 240
NlaIII CATG 3 cut(s) 112, 174, 704
NlaIV GGNNCC 1 cut(s) 660
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 2 cut(s) 38, 753
PaqCI CACCTGC 1 cut(s) 144
PctI GAATGC 1 cut(s) 751
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 3 cut(s) 4, 81, 604
PkrI GCNGC 5 cut(s) 63, 313, 316, 330, 565
PleI GAGTC 1 cut(s) 943
PmaCI CACGTG 1 cut(s) 992
PmlI CACGTG 1 cut(s) 992
PpsI GAGTC 1 cut(s) 943
Ppu21I YACGTR 1 cut(s) 992
PpuMI RGGWCCY 1 cut(s) 71
PsiI TTATAA 1 cut(s) 1071
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 122, 597
PspCI CACGTG 1 cut(s) 992
PspEI GGTNACC 1 cut(s) 835
PspFI CCCAGC 1 cut(s) 850
PspGI CCWGG 2 cut(s) 122, 597
PspN4I GGNNCC 1 cut(s) 660
PspPI GGNCC 3 cut(s) 71, 446, 1109
PspPPI RGGWCCY 1 cut(s) 71
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 221
RsaI GTAC 2 cut(s) 578, 631
RsaNI GTAC 2 cut(s) 577, 630
SaqAI TTAA 8 cut(s) 392, 413, 516, 543, 587, 687, 825, 1037
SatI GCNGC 5 cut(s) 62, 312, 315, 329, 564
Sau3AI GATC 3 cut(s) 27, 221, 240
Sau96I GGNCC 3 cut(s) 71, 446, 1109
SchI GAGTC 1 cut(s) 944
ScrFI CCNGG 2 cut(s) 124, 599
SduI GDGCHC 1 cut(s) 974
SetI ASST 8 cut(s) 73, 158, 333, 514, 799, 842, 859, 994
SfaNI GCATC 3 cut(s) 23, 45, 243
SfcI CTRYAG 1 cut(s) 151
SinI GGWCC 3 cut(s) 71, 446, 1109
SmlI CTYRAG 2 cut(s) 967, 1018
SmoI CTYRAG 2 cut(s) 967, 1018
SpeI ACTAGT 1 cut(s) 1100
Sse9I AATT 5 cut(s) 114, 228, 483, 896, 1008
SsiI CCGC 2 cut(s) 368, 676
SspMI CTAG 5 cut(s) 284, 332, 798, 1101, 1159
StyD4I CCNGG 2 cut(s) 122, 597
StyI CCWWGG 2 cut(s) 8, 840
TaaI ACNGT 1 cut(s) 890
TaiI ACGT 1 cut(s) 994
TaqII GACCGA 1 cut(s) 463
TasI AATT 5 cut(s) 114, 228, 483, 896, 1008
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 3 cut(s) 4, 81, 604
Tru1I TTAA 8 cut(s) 392, 413, 516, 543, 587, 687, 825, 1037
Tru9I TTAA 8 cut(s) 392, 413, 516, 543, 587, 687, 825, 1037
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 5 cut(s) 61, 311, 314, 328, 563
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 5 cut(s) 17, 487, 701, 929, 1017
TspGWI ACGGA 1 cut(s) 672
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 3 cut(s) 71, 446, 1109
XapI RAATTY 2 cut(s) 114, 896
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 5 cut(s) 284, 332, 798, 1101, 1159
Zsp2I ATGCAT 2 cut(s) 38, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.