Rh4AG179200

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000298
Physical Location & Seq
Reverse (-)
44885384 .. 44887544
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG179200.1

Sequence Viewer

Length: 366 bp
ATGAAGAGTGGAAAAAGGCAAAGAAAAGAACGACGACAGCTGAAAGGTGTTTGCAGAATCCAACAACTTCCCCATGCTTTAGTTATGGACATTCTCTCAAGGCTCTCCTCAGTCAAGAGCCTCTTCAACTGCAGGCTCGTTTGCAAAGAGTGGTTTAACATAATTTCTGACCCTCAGTTTGCTCGTCTACAGCTTCCCAGATCATCTATCAGCGTTGCAATGTTGATCCAGTCATATTCTGACAGAAAACAACAAAGCAATCTTGATTTCACCTATATAGAAGAAAAGCCTGGTTCTAGTCAACCCTGGTTGGAAAGAAAGAAATTTGCACCCCTTCCAAAGTTCCAATTTCTAAATATGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

121

Amino Acids

14.26

Weight (kDa)

10.34

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 20 - 60 1.6e-10 F-box-like
F-box PF00646 20 - 60 1.1e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 187
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 323
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 2 cut(s) 289, 305
AluBI AGCT 2 cut(s) 40, 193
AluI AGCT 2 cut(s) 40, 193
AlwI GGATC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 323
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AsuHPI GGTGA 1 cut(s) 262
BciT130I CCWGG 2 cut(s) 291, 307
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 2 cut(s) 130, 188
Bme1390I CCNGG 2 cut(s) 291, 307
BmrFI CCNGG 2 cut(s) 291, 307
BpuEI CTTGAG 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 2 cut(s) 291, 307
BseDI CCNNGG 1 cut(s) 305
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 123, 188
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 97
Bsp143I GATC 2 cut(s) 200, 225
BspCNI CTCAG 2 cut(s) 122, 187
BspMAI CTGCAG 1 cut(s) 134
BspPI GGATC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 2 cut(s) 200, 225
Bst2UI CCWGG 2 cut(s) 291, 307
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 109, 174
BstKTI GATC 2 cut(s) 203, 228
BstMBI GATC 2 cut(s) 200, 225
BstNI CCWGG 2 cut(s) 291, 307
BstSCI CCNGG 2 cut(s) 289, 305
BstSFI CTRYAG 2 cut(s) 130, 188
Cac8I GCNNGC 1 cut(s) 134
CviAII CATG 1 cut(s) 74
CviJI RGCY 6 cut(s) 40, 103, 120, 136, 193, 289
CviKI_1 RGCY 6 cut(s) 40, 103, 120, 136, 193, 289
DdeI CTNAG 2 cut(s) 109, 174
DpnI GATC 2 cut(s) 202, 227
DpnII GATC 2 cut(s) 200, 225
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 289, 305
FaeI CATG 1 cut(s) 77
FaiI YATR 7 cut(s) 75, 86, 161, 235, 276, 278, 359
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 1 cut(s) 73
FblI GTMKAC 1 cut(s) 187
FspBI CTAG 1 cut(s) 297
Hin1II CATG 1 cut(s) 77
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HinfI GANTC 1 cut(s) 57
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 188, 302
Hpy188I TCNGA 3 cut(s) 169, 241, 365
Hpy188III TCNNGA 2 cut(s) 115, 263
Hpy8I GTNNAC 2 cut(s) 188, 302
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 344
HpyCH4V TGCA 5 cut(s) 54, 132, 144, 218, 329
HpyF3I CTNAG 2 cut(s) 109, 174
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 2 cut(s) 200, 225
LpnPI CCDG 7 cut(s) 118, 211, 242, 276, 292, 303, 319
MaeI CTAG 1 cut(s) 297
MalI GATC 2 cut(s) 202, 227
MboI GATC 2 cut(s) 200, 225
MboII GAAGA 3 cut(s) 16, 115, 293
MluCI AATT 3 cut(s) 162, 323, 347
MmeI TCCRAC 2 cut(s) 85, 291
MnlI CCTC 3 cut(s) 118, 131, 183
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 40
MspR9I CCNGG 2 cut(s) 291, 307
MvaI CCWGG 2 cut(s) 291, 307
NdeII GATC 2 cut(s) 200, 225
NlaIII CATG 1 cut(s) 77
PfeI GAWTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 289, 305
PspGI CCWGG 2 cut(s) 289, 305
PstI CTGCAG 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 40
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 2 cut(s) 200, 225
ScrFI CCNGG 2 cut(s) 291, 307
SetI ASST 4 cut(s) 42, 49, 195, 275
SfcI CTRYAG 2 cut(s) 130, 188
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 3 cut(s) 162, 323, 347
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 289, 305
TasI AATT 3 cut(s) 162, 323, 347
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.