pycom13g15380

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000298
Physical Location & Seq
Reverse (-)
11213516 .. 11214022
507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15380.1

Sequence Viewer

Length: 507 bp
ATGCATTTGCACCATAGAGCATGTTTGATCCGCGAGTGCTGGGTTTCTGATCTCATAAGTACTTTTGACTTCGACAGAGAACAATTCGGATCACTATCCTTACCTAGATTACCAGAGAATCATTTTTCTAATATGTTGGTATTGAATGTGGTGGGAGATTGTCTCCATTTATGTGTGATTGGTGTTGATTCTCTCAAATTGGTCATGTGGGCTATGAAGGAGTACGGTGTTCAAGAGTCTTGGACAAAAATCATCGTTTTTGAAAGCTTGTATAAGTATCACAGGGATCTAAGCTGGCAGTCGTATGAACATATTATGTTTCTAAATAATGATGAAATCCTGCTGTTGTTCAACAATAGGGATGTGGTTTGTTATAATCAAGAAACTAAGAGCTTCAGGGAGATATCAATTCAAGCGACTACATCGCCCTTTTTAGCAATTGCTTACAGTCCCTCCTTTATTTCGCTCTACGATGTTGCAGAAGGAGAAGAGGTGGAGAGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

169

Amino Acids

19.75

Weight (kDa)

5.04

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 18 - 155 2.3e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccII CGCG 1 cut(s) 33
AciI CCGC 1 cut(s) 31
AclWI GGATC 3 cut(s) 22, 97, 294
AcuI CTGAAG 1 cut(s) 379
AfaI GTAC 3 cut(s) 61, 224, 503
AgsI TTSAA 5 cut(s) 145, 233, 263, 352, 413
AluBI AGCT 3 cut(s) 267, 294, 393
AluI AGCT 3 cut(s) 267, 294, 393
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 3 cut(s) 22, 97, 294
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 105
BmcAI AGTACT 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 147, 179
BsaBI GATNNNNATC 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 477, 507
Bse8I GATNNNNATC 1 cut(s) 94
BseGI GGATG 1 cut(s) 367
BseJI GATNNNNATC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 435
Bsp143I GATC 4 cut(s) 27, 49, 89, 286
BspACI CCGC 1 cut(s) 31
BspFNI CGCG 1 cut(s) 33
BspPI GGATC 3 cut(s) 22, 97, 294
BssMI GATC 4 cut(s) 27, 49, 89, 286
Bst4CI ACNGT 2 cut(s) 227, 449
Bst6I CTCTTC 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 290, 387
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 33
BstKTI GATC 4 cut(s) 30, 52, 92, 289
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 4 cut(s) 27, 49, 89, 286
BstNSI RCATGY 1 cut(s) 24
BstUI CGCG 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 296
Csp6I GTAC 3 cut(s) 60, 223, 502
CviAII CATG 2 cut(s) 21, 205
CviJI RGCY 4 cut(s) 212, 267, 294, 393
CviKI_1 RGCY 4 cut(s) 212, 267, 294, 393
CviQI GTAC 3 cut(s) 60, 223, 502
DdeI CTNAG 2 cut(s) 290, 387
DpnI GATC 4 cut(s) 29, 51, 91, 288
DpnII GATC 4 cut(s) 27, 49, 89, 286
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 379
EcoRV GATATC 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 24, 208
FaqI GGGAC 1 cut(s) 435
FatI CATG 2 cut(s) 20, 204
FokI GGATG 1 cut(s) 374
FspBI CTAG 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 43
Hin1II CATG 2 cut(s) 24, 208
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 3 cut(s) 118, 188, 236
Hpy188I TCNGA 2 cut(s) 49, 89
Hpy188III TCNNGA 2 cut(s) 233, 380
HpyAV CCTTC 2 cut(s) 211, 476
HpyCH4III ACNGT 2 cut(s) 227, 449
HpyCH4V TGCA 3 cut(s) 4, 10, 479
HpyF3I CTNAG 2 cut(s) 290, 387
Hsp92II CATG 2 cut(s) 24, 208
Kzo9I GATC 4 cut(s) 27, 49, 89, 286
LpnPI CCDG 6 cut(s) 25, 126, 268, 280, 353, 382
MaeI CTAG 1 cut(s) 105
MalI GATC 4 cut(s) 29, 51, 91, 288
MboI GATC 4 cut(s) 27, 49, 89, 286
MboII GAAGA 1 cut(s) 500
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 1 cut(s) 286
MluCI AATT 4 cut(s) 83, 197, 408, 438
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 3 cut(s) 463, 484, 492
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 171
MunI CAATTG 1 cut(s) 438
MvnI CGCG 1 cut(s) 33
NdeII GATC 4 cut(s) 27, 49, 89, 286
NlaIII CATG 2 cut(s) 24, 208
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 24
PfeI GAWTC 2 cut(s) 118, 188
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PsiI TTATAA 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 3 cut(s) 61, 224, 503
RsaNI GTAC 3 cut(s) 60, 223, 502
RseI CAYNNNNRTG 1 cut(s) 171
Sau3AI GATC 4 cut(s) 27, 49, 89, 286
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 1 cut(s) 245
SetI ASST 6 cut(s) 106, 269, 296, 395, 495, 503
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 4 cut(s) 83, 197, 408, 438
SsiI CCGC 1 cut(s) 31
SspMI CTAG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 227, 449
TaqI TCGA 1 cut(s) 72
TasI AATT 4 cut(s) 83, 197, 408, 438
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 2 cut(s) 118, 188
TspDTI ATGAA 3 cut(s) 230, 321, 348
XceI RCATGY 1 cut(s) 24
XspI CTAG 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.