RLG00000006686

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000298
Physical Location & Seq
Forward (+)
9654126 .. 9655184
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006686

Sequence Viewer

Length: 1059 bp
ATGCTTCCTCACTACCCCGAATTAGGGTTTCGTTTAAAGCCAGTAAGCCACAACTCTCACGTTCACCTCTCACCGTCTCCTCATATACCCAAAACCCGTCTAAAAAGTAAGTACAGAACAGCTTCAATGAGACGCAAGAACAGAAAGATCAACAGCGTTGAGCAACTAGAAGAAGAAGAATGGCAACCCAAAGGTCCTTGCAGGTTTCATGAGCTTCCGCAGGGTTTAGTCATGGACATTCTCTCCAGGCTCTCTCTTAAAACCCTCTTCAAATGCAGGTGTGTTTGCAAGTCCTGGCTTTTCACGGCAGCGGACCCTTATTTTACTCATATCTGCCTGTCAAGAGTACCCATTGGTATCTTGATCAAGACCATTCCCATCAATAGGAATTCAAGGATTATTGATTTGACCCAAATTGAACAATCTACTGGATCTCACTTCCAGCTTGAGAAAGTGAGATTTAGTCCCAAATATAGCCTACCCCCAATTTCTGATTTTGATCTGATCAACTCCTGCAATGGCTTACTTCTTTTGGTTGGCATTGGAATAGACGACCCCTTTTATGTTTGCAATCCAGTTTCGGGTGAGTACATCACTATTCCGCGTCCTAAAGAAGCTTGGCTCAAATATAGCTTTTTAGGACTTGGTTATAGCGCCGCAACCAATGAGTACAAAGTGTTGCAAAGTAGCTCATGCATAAACAAAGCTAAGGTCCATGACGCTGAGTGTGAGGCTCTGATATACAGAATTGGTACTGGAGGAGGAGCTTGGAGAAGCATCGGAAAAACTCCTCCGGACGAAACCCGGGAACCTCCGTTTAGTTCTTTTCTACATGGAGCTCTTCACTGGATTTCCGCTGGTTCTCAAAATTTTGTGTTTATACATTCATTCAACTTTGAAACAGAAAAGTTTCGCACACTACCCCCACCTGGCTACTTTAAACCAATTCAGCAGAAATCTAAACGGGGTCTCAAATTGGGAGTGTTAAAAGGTTGTCTCTTTTTATGTGTATGTGGTGATGAGCCTCGACAATTTGACATGTGGGTTATGAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

353

Amino Acids

40.07

Weight (kDa)

9.29

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 70 - 109 1.7e-08 F-box domain
F-box-like PF12937 70 - 113 5.5e-08 F-box-like
b-prop_At3g26010-like PF24750 162 - 314 6e-06 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 164 - 352 4.9e-15 F-box associated beta propeller domain
FBA_1 PF07734 165 - 351 1.5e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 267
Acc36I ACCTGC 2 cut(s) 192, 267
AccII CGCG 1 cut(s) 604
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 5 cut(s) 218, 311, 602, 657, 855
AclWI GGATC 1 cut(s) 439
AcsI RAATTY 2 cut(s) 388, 868
AfaI GTAC 5 cut(s) 113, 348, 590, 671, 754
AfiI CCNNNNNNNGG 5 cut(s) 23, 24, 384, 581, 929
AflIII ACRYGT 1 cut(s) 1038
AgsI TTSAA 6 cut(s) 126, 271, 393, 419, 892, 899
AjnI CCWGG 3 cut(s) 245, 293, 928
AluBI AGCT 9 cut(s) 122, 214, 445, 617, 633, 690, 707, 767, 839
AluI AGCT 9 cut(s) 122, 214, 445, 617, 633, 690, 707, 767, 839
Alw21I GWGCWC 1 cut(s) 841
Alw26I GTCTC 4 cut(s) 81, 124, 974, 1001
AlwI GGATC 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 804
Aor13HI TCCGGA 1 cut(s) 793
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 2 cut(s) 388, 868
ArsI GACNNNNNNTTYG 2 cut(s) 696, 728
Asp700I GAANNNNTTC 2 cut(s) 121, 909
AspLEI GCGC 1 cut(s) 656
AspS9I GGNCC 3 cut(s) 194, 313, 712
AsuC2I CCSGG 2 cut(s) 805, 806
AsuHPI GGTGA 4 cut(s) 56, 63, 596, 1028
AvaI CYCGRG 1 cut(s) 804
AvaII GGWCC 3 cut(s) 194, 313, 712
BanII GRGCYC 1 cut(s) 841
Bbv12I GWGCWC 1 cut(s) 841
BbvI GCAGC 1 cut(s) 320
BccI CCATC 1 cut(s) 386
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 3 cut(s) 247, 295, 930
BclI TGATCA 2 cut(s) 363, 504
BcnI CCSGG 2 cut(s) 805, 806
BcoDI GTCTC 4 cut(s) 81, 124, 974, 1001
BfaI CTAG 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 657
BfuAI ACCTGC 2 cut(s) 192, 267
BisI GCNGC 2 cut(s) 309, 657
BlsI GCNGC 2 cut(s) 310, 658
Bme1390I CCNGG 5 cut(s) 247, 295, 805, 806, 930
Bme18I GGWCC 3 cut(s) 194, 313, 712
BmeT110I CYCGRG 1 cut(s) 804
BmgT120I GGNCC 3 cut(s) 194, 313, 712
BmiI GGNNCC 2 cut(s) 315, 810
BmrFI CCNGG 5 cut(s) 247, 295, 805, 806, 930
BmsI GCATC 1 cut(s) 786
BpmI CTGGAG 2 cut(s) 229, 777
Bpu10I CCTNAGC 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 2 cut(s) 805, 806
BsaBI GATNNNNATC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 1 cut(s) 804
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 24, 384, 581, 929
Bse1I ACTGG 5 cut(s) 41, 433, 575, 760, 851
Bse3DI GCAATG 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 498
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 3 cut(s) 247, 295, 930
BseDI CCNNGG 1 cut(s) 804
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 5 cut(s) 23, 24, 384, 581, 929
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 5 cut(s) 41, 433, 575, 760, 851
BseRI GAGGAG 4 cut(s) 69, 774, 777, 780
BseXI GCAGC 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 604
BsiHKAI GWGCWC 1 cut(s) 841
BsiHKCI CYCGRG 1 cut(s) 804
BsiSI CCGG 2 cut(s) 794, 805
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 5 cut(s) 23, 24, 384, 581, 929
BsmAI GTCTC 4 cut(s) 81, 124, 974, 1001
BsmBI CGTCTC 2 cut(s) 81, 124
BsmFI GGGAC 1 cut(s) 450
Bso31I GGTCTC 1 cut(s) 974
BsoBI CYCGRG 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 841
Bsp13I TCCGGA 1 cut(s) 793
Bsp143I GATC 5 cut(s) 147, 363, 431, 499, 504
BspACI CCGC 5 cut(s) 218, 311, 602, 657, 855
BspCNI CTCAG 1 cut(s) 715
BspEI TCCGGA 1 cut(s) 793
BspFNI CGCG 1 cut(s) 604
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 315, 810
BspMI ACCTGC 2 cut(s) 192, 267
BspPI GGATC 1 cut(s) 439
BspQI GCTCTTC 1 cut(s) 846
BspTNI GGTCTC 1 cut(s) 974
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 5 cut(s) 41, 433, 575, 760, 851
BssECI CCNNGG 1 cut(s) 804
BssMI GATC 5 cut(s) 147, 363, 431, 499, 504
Bst2UI CCWGG 3 cut(s) 247, 295, 930
Bst4CI ACNGT 1 cut(s) 75
Bst6I CTCTTC 2 cut(s) 272, 846
BstDEI CTNAG 2 cut(s) 708, 723
BstFNI CGCG 1 cut(s) 604
BstH2I RGCGCY 1 cut(s) 657
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 5 cut(s) 150, 366, 434, 502, 507
BstMAI GTCTC 4 cut(s) 81, 124, 974, 1001
BstMBI GATC 5 cut(s) 147, 363, 431, 499, 504
BstNI CCWGG 3 cut(s) 247, 295, 930
BstNSI RCATGY 1 cut(s) 1042
BstSCI CCNGG 5 cut(s) 245, 293, 803, 804, 928
BstUI CGCG 1 cut(s) 604
BstV1I GCAGC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 844
BveI ACCTGC 2 cut(s) 192, 267
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 656
Cfr13I GGNCC 3 cut(s) 194, 313, 712
Cfr9I CCCGGG 1 cut(s) 804
CseI GACGC 3 cut(s) 141, 593, 728
Csp6I GTAC 5 cut(s) 112, 347, 589, 670, 753
CviAII CATG 6 cut(s) 209, 232, 693, 716, 833, 1039
CviQI GTAC 5 cut(s) 112, 347, 589, 670, 753
DdeI CTNAG 2 cut(s) 708, 723
DpnI GATC 5 cut(s) 149, 365, 433, 501, 506
DpnII GATC 5 cut(s) 147, 363, 431, 499, 504
DraI TTTAAA 2 cut(s) 36, 940
Eam1104I CTCTTC 2 cut(s) 272, 846
EarI CTCTTC 2 cut(s) 272, 846
Ecl136II GAGCTC 1 cut(s) 839
Eco24I GRGCYC 1 cut(s) 841
Eco31I GGTCTC 1 cut(s) 974
Eco47I GGWCC 3 cut(s) 194, 313, 712
Eco53kI GAGCTC 1 cut(s) 839
Eco88I CYCGRG 1 cut(s) 804
EcoICRI GAGCTC 1 cut(s) 839
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 388
EcoRII CCWGG 3 cut(s) 245, 293, 928
EcoT22I ATGCAT 1 cut(s) 698
EcoT38I GRGCYC 1 cut(s) 841
Esp3I CGTCTC 2 cut(s) 81, 124
FaeI CATG 6 cut(s) 212, 235, 696, 719, 836, 1042
FaqI GGGAC 1 cut(s) 450
FatI CATG 6 cut(s) 208, 231, 692, 715, 832, 1038
FbaI TGATCA 2 cut(s) 363, 504
Fnu4HI GCNGC 2 cut(s) 309, 657
FriOI GRGCYC 1 cut(s) 841
Fsp4HI GCNGC 2 cut(s) 309, 657
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 655
GluI GCNGC 2 cut(s) 309, 657
GsuI CTGGAG 2 cut(s) 229, 777
HaeII RGCGCY 1 cut(s) 657
HapII CCGG 2 cut(s) 794, 805
HgaI GACGC 3 cut(s) 141, 593, 728
HhaI GCGC 1 cut(s) 656
Hin1II CATG 6 cut(s) 212, 235, 696, 719, 836, 1042
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HindIII AAGCTT 1 cut(s) 615
HpaII CCGG 2 cut(s) 794, 805
HphI GGTGA 4 cut(s) 56, 63, 596, 1028
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 4 cut(s) 493, 504, 738, 782
Hpy188III TCNNGA 5 cut(s) 209, 342, 361, 367, 794
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 1045
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 7 cut(s) 201, 276, 288, 516, 570, 682, 696
HpyF3I CTNAG 2 cut(s) 708, 723
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 6 cut(s) 212, 235, 696, 719, 836, 1042
HspAI GCGC 1 cut(s) 654
Kpn2I TCCGGA 1 cut(s) 793
Ksp22I TGATCA 2 cut(s) 363, 504
Kzo9I GATC 5 cut(s) 147, 363, 431, 499, 504
LguI GCTCTTC 1 cut(s) 846
LmnI GCTCC 2 cut(s) 764, 836
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 1 cut(s) 786
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 60
MalI GATC 5 cut(s) 149, 365, 433, 501, 506
MboI GATC 5 cut(s) 147, 363, 431, 499, 504
MboII GAAGA 5 cut(s) 182, 185, 188, 259, 833
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 841
MluCI AATT 9 cut(s) 20, 388, 414, 486, 747, 868, 945, 974, 1031
Mph1103I ATGCAT 1 cut(s) 698
MroI TCCGGA 1 cut(s) 793
MroXI GAANNNNTTC 2 cut(s) 121, 909
MseI TTAA 5 cut(s) 35, 258, 939, 986, 1057
MspA1I CMGCKG 2 cut(s) 311, 857
MspI CCGG 2 cut(s) 794, 805
MspR9I CCNGG 5 cut(s) 247, 295, 805, 806, 930
MvaI CCWGG 3 cut(s) 247, 295, 930
MvnI CGCG 1 cut(s) 604
NciI CCSGG 2 cut(s) 805, 806
NdeII GATC 5 cut(s) 147, 363, 431, 499, 504
NlaIII CATG 6 cut(s) 212, 235, 696, 719, 836, 1042
NlaIV GGNNCC 2 cut(s) 315, 810
NsiI ATGCAT 1 cut(s) 698
NspI RCATGY 1 cut(s) 1042
PagI TCATGA 1 cut(s) 208
PaqCI CACCTGC 1 cut(s) 267
PciI ACATGT 1 cut(s) 1038
PciSI GCTCTTC 1 cut(s) 846
PdmI GAANNNNTTC 2 cut(s) 121, 909
PkrI GCNGC 2 cut(s) 310, 658
PpuMI RGGWCCY 1 cut(s) 194
PscI ACATGT 1 cut(s) 1038
Psp124BI GAGCTC 1 cut(s) 841
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 3 cut(s) 245, 293, 928
PspGI CCWGG 3 cut(s) 245, 293, 928
PspN4I GGNNCC 2 cut(s) 315, 810
PspPI GGNCC 3 cut(s) 194, 313, 712
PspPPI RGGWCCY 1 cut(s) 194
PsuI RGATCY 1 cut(s) 431
RsaI GTAC 5 cut(s) 113, 348, 590, 671, 754
RsaNI GTAC 5 cut(s) 112, 347, 589, 670, 753
SacI GAGCTC 1 cut(s) 841
SapI GCTCTTC 1 cut(s) 846
SaqAI TTAA 5 cut(s) 35, 258, 939, 986, 1057
SatI GCNGC 2 cut(s) 309, 657
Sau3AI GATC 5 cut(s) 147, 363, 431, 499, 504
Sau96I GGNCC 3 cut(s) 194, 313, 712
ScrFI CCNGG 5 cut(s) 247, 295, 805, 806, 930
SduI GDGCHC 1 cut(s) 841
SfaNI GCATC 1 cut(s) 786
SinI GGWCC 3 cut(s) 194, 313, 712
SmaI CCCGGG 1 cut(s) 806
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 9 cut(s) 20, 388, 414, 486, 747, 868, 945, 974, 1031
SsiI CCGC 5 cut(s) 218, 311, 602, 657, 855
SspMI CTAG 1 cut(s) 167
SstI GAGCTC 1 cut(s) 841
StyD4I CCNGG 5 cut(s) 245, 293, 803, 804, 928
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 1027
TasI AATT 9 cut(s) 20, 388, 414, 486, 747, 868, 945, 974, 1031
TatI WGTACW 3 cut(s) 111, 588, 669
TauI GCSGC 1 cut(s) 659
Tru1I TTAA 5 cut(s) 35, 258, 939, 986, 1057
Tru9I TTAA 5 cut(s) 35, 258, 939, 986, 1057
TscAI CASTG 1 cut(s) 851
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 197, 876
TspGWI ACGGA 1 cut(s) 804
TspMI CCCGGG 1 cut(s) 804
TspRI CASTG 1 cut(s) 851
VpaK11BI GGWCC 3 cut(s) 194, 313, 712
XapI RAATTY 2 cut(s) 388, 868
XceI RCATGY 1 cut(s) 1042
XmaI CCCGGG 1 cut(s) 804
XmnI GAANNNNTTC 2 cut(s) 121, 909
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.