Rorug04G0161400

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000298
Physical Location & Seq
Reverse (-)
28060133 .. 28060909
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0161400.1

Sequence Viewer

Length: 777 bp
ATGTGCCTTGGCTCTGATGTAGTGGCTCTTCCAGCTACAGAATTTGGTGTTCCAGCATCTCTTTACCCACAACAAGATTTATTCATCAACTCATTGTCAACTTCCAGGGAATATGTTAATAGTGAAGCTTGTGTCAATCAGAGATTTGTGTTTGATGCCTCAAATATTGTACGTCTCAAGTCTAAAGCCACTAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGACAGCACTTCTTTGGAAATGTGCAATGGAAGCATCAAGATCAAACTTGAGTTTTACAAGGCCAGCTATGCTGTTTCTAGCAGCAAACATGCGGAAAGTATTGAAGCATCCTACTTTAATGGGAAATCTTATAGGATGTGTCTTTGCAGCAAAGACACAAGAATGTGATGCAACTCTTCAAAGCTTAGTTGCTATAATCAGGAAAAGCATTGAGGAATTTAAAGTGAAATATGGTGAGGGAGTTAGCGGGGATGCTATTTGCCAACATTTTAAAGAGCATGGAGATTTAATGGATAATAATGATATAAATAACTATATCTGCAGCAGTTGGTGCAAGTTTGGCTTTTATGAAGCCAATTTTGGATGGGGAAAGCCATCTTGGGTCACTTTTCCAGGTATGAAAATCAAGAATACAATTGTGTTGATTGATACAAAAGACGGTGAAGGCATGGAAGCGTTCTTGAGTTTAAAACAAGAGGACATGGCTATAATTGAAACCAATAAGGAGCTGCTTGCATATGCTTCTCTCAATCCCACTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

258

Amino Acids

28.55

Weight (kDa)

5.98

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 29 - 247 2.7e-36 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 322, 477
AcsI RAATTY 2 cut(s) 41, 446
AfaI GTAC 1 cut(s) 171
AgsI TTSAA 4 cut(s) 224, 334, 410, 725
AhlI ACTAGT 1 cut(s) 191
AjnI CCWGG 2 cut(s) 104, 622
AjuI GAANNNNNNNTTGG 4 cut(s) 573, 592, 605, 624
AluBI AGCT 5 cut(s) 35, 128, 296, 414, 739
AluI AGCT 5 cut(s) 35, 128, 296, 414, 739
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 4 cut(s) 311, 377, 552, 739
ApoI RAATTY 2 cut(s) 41, 446
AsuHPI GGTGA 2 cut(s) 476, 683
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BauI CACGAG 1 cut(s) 216
BbvI GCAGC 4 cut(s) 323, 389, 564, 726
BccI CCATC 2 cut(s) 588, 613
BciT130I CCWGG 2 cut(s) 106, 624
BcoDI GTCTC 1 cut(s) 179
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 2 cut(s) 192, 308
BfmI CTRYAG 2 cut(s) 36, 550
BisI GCNGC 4 cut(s) 312, 378, 553, 740
BlsI GCNGC 4 cut(s) 313, 379, 554, 741
Bme1390I CCNGG 2 cut(s) 106, 624
BmrFI CCNGG 2 cut(s) 106, 624
BmsI GCATC 6 cut(s) 65, 145, 272, 346, 388, 472
BpuEI CTTGAG 3 cut(s) 161, 298, 712
BsaJI CCNNGG 2 cut(s) 7, 105
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 2 cut(s) 106, 624
BseDI CCNNGG 2 cut(s) 7, 105
BseGI GGATG 4 cut(s) 337, 371, 487, 599
BseMI GCAATG 1 cut(s) 261
BseXI GCAGC 4 cut(s) 323, 389, 564, 726
BshFI GGCC 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 2 cut(s) 322, 477
BspANI GGCC 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 554
BspQI GCTCTTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 7, 105
BssMI GATC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 106, 624
Bst4CI ACNGT 3 cut(s) 202, 671, 769
Bst6I CTCTTC 2 cut(s) 33, 411
BstAPI GCANNNNNTGC 1 cut(s) 561
BstC8I GCNNGC 2 cut(s) 294, 744
BstDEI CTNAG 1 cut(s) 415
BstF5I GGATG 4 cut(s) 337, 371, 487, 599
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 6 cut(s) 32, 194, 260, 298, 561, 570
BstNI CCWGG 2 cut(s) 106, 624
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 2 cut(s) 104, 622
BstSFI CTRYAG 2 cut(s) 36, 550
BstV1I GCAGC 4 cut(s) 323, 389, 564, 726
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 4 cut(s) 337, 371, 487, 599
BtsIMutI CAGTG 1 cut(s) 765
Cac8I GCNNGC 2 cut(s) 294, 744
Csp6I GTAC 1 cut(s) 170
CviAII CATG 4 cut(s) 319, 509, 679, 712
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 1 cut(s) 415
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
DraI TTTAAA 3 cut(s) 451, 502, 699
Eam1104I CTCTTC 2 cut(s) 33, 411
EarI CTCTTC 2 cut(s) 33, 411
Eco130I CCWWGG 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 104, 622
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 4 cut(s) 322, 512, 682, 715
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FatI CATG 4 cut(s) 318, 508, 678, 711
FauI CCCGC 1 cut(s) 470
FauNDI CATATG 1 cut(s) 748
Fnu4HI GCNGC 4 cut(s) 312, 378, 553, 740
FokI GGATG 4 cut(s) 324, 378, 494, 606
Fsp4HI GCNGC 4 cut(s) 312, 378, 553, 740
FspBI CTAG 2 cut(s) 192, 308
GluI GCNGC 4 cut(s) 312, 378, 553, 740
HaeIII GGCC 1 cut(s) 292
Hin1II CATG 4 cut(s) 322, 512, 682, 715
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HindIII AAGCTT 2 cut(s) 126, 412
HphI GGTGA 2 cut(s) 476, 683
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 2 cut(s) 16, 141
Hpy188III TCNNGA 4 cut(s) 267, 430, 637, 691
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 1 cut(s) 668
HpyCH4III ACNGT 3 cut(s) 202, 671, 769
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 6 cut(s) 254, 377, 401, 552, 564, 746
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 194, 260, 298, 561, 570
HpyF3I CTNAG 1 cut(s) 415
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 4 cut(s) 322, 512, 682, 715
Kzo9I GATC 1 cut(s) 269
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 736
LpnPI CCDG 8 cut(s) 45, 66, 91, 118, 306, 415, 609, 636
Lsp1109I GCAGC 4 cut(s) 323, 389, 564, 726
LweI GCATC 6 cut(s) 65, 145, 272, 346, 388, 472
MaeI CTAG 2 cut(s) 192, 308
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 2 cut(s) 229, 613
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 2 cut(s) 20, 398
MfeI CAATTG 1 cut(s) 645
MluCI AATT 5 cut(s) 41, 446, 586, 645, 720
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 169, 436, 460, 700
MseI TTAA 6 cut(s) 117, 347, 450, 501, 518, 698
MslI CAYNNNNRTG 1 cut(s) 391
MspR9I CCNGG 2 cut(s) 106, 624
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 2 cut(s) 106, 624
MwoI GCNNNNNNNGC 6 cut(s) 32, 194, 260, 298, 561, 570
NdeI CATATG 1 cut(s) 748
NdeII GATC 1 cut(s) 269
NlaIII CATG 4 cut(s) 322, 512, 682, 715
NmuCI GTSAC 2 cut(s) 229, 613
NspI RCATGY 1 cut(s) 322
PciSI GCTCTTC 1 cut(s) 33
PkrI GCNGC 4 cut(s) 313, 379, 554, 741
Psp6I CCWGG 2 cut(s) 104, 622
PspGI CCWGG 2 cut(s) 104, 622
PstI CTGCAG 1 cut(s) 554
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 391
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 6 cut(s) 117, 347, 450, 501, 518, 698
SatI GCNGC 4 cut(s) 312, 378, 553, 740
Sau3AI GATC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 106, 624
SetI ASST 7 cut(s) 37, 130, 175, 298, 416, 628, 741
SfaNI GCATC 6 cut(s) 65, 145, 272, 346, 388, 472
SfcI CTRYAG 2 cut(s) 36, 550
SmiMI CAYNNNNRTG 1 cut(s) 391
SmlI CTYRAG 3 cut(s) 176, 277, 691
SmoI CTYRAG 3 cut(s) 176, 277, 691
SpeI ACTAGT 1 cut(s) 191
Sse9I AATT 5 cut(s) 41, 446, 586, 645, 720
SsiI CCGC 2 cut(s) 322, 477
SspI AATATT 1 cut(s) 166
SspMI CTAG 2 cut(s) 192, 308
StyD4I CCNGG 2 cut(s) 104, 622
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 3 cut(s) 202, 671, 769
TaiI ACGT 1 cut(s) 175
TasI AATT 5 cut(s) 41, 446, 586, 645, 720
Tru1I TTAA 6 cut(s) 117, 347, 450, 501, 518, 698
Tru9I TTAA 6 cut(s) 117, 347, 450, 501, 518, 698
TscAI CASTG 1 cut(s) 772
TseFI GTSAC 2 cut(s) 229, 613
TseI GCWGC 4 cut(s) 311, 377, 552, 739
Tsp45I GTSAC 2 cut(s) 229, 613
TspDTI ATGAA 3 cut(s) 73, 594, 644
TspRI CASTG 1 cut(s) 772
XapI RAATTY 2 cut(s) 41, 446
XceI RCATGY 1 cut(s) 322
XspI CTAG 2 cut(s) 192, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.