RchiOBHm_Chr4g0420091

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Forward (+)
45756106 .. 45759931
3826 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38986

Sequence Viewer

Length: 945 bp
ATGAGACGAAGGAAAAGAGTAGCGAACATTTCACCTATCAACACGGAAGAACAAGAAGAATGGCAACCCAAAGGTCCCTGCAGATTCCAACAGCTTCCACAGGCTTTAGTCATAGACATTCTCTCAAGGCTCTTGGTCAAGACCCTCTTCAACTGCAGGTGCATATGCAAATCTTGGCTTTCCATTATTTCCGACCCTCATTTTTCCCACATGCGCCTTTCGAAGTTACCCATTGGGATACTGATCAAGACGAGACCCGAAATGCAATGGTTTGCTTCTTTTGTCCGGCGCTGGTCCAATAAGAGATGGCCCATTGCATGTGTGCAATCCAATTTTAGCTTTTTCGGACTTGGTTATAGTGTCGCAACCAAGGAATACAAGGTGCTGCAAACATGCAGCGGCGACGACCGCACCGATGAGAATGAGGCTCAGATATACACAATTGGTTCGGGAGTTTGGAAAAGCATTGGGAAAACTCCTCAGGACTCTGCCCAGTTAGCACCATTCAATGCTGATCTGCATGGAGCTCTTCATTGGCTTTCCTTTGGTGGAAGAACATTTGAGTTCATACATGCATTTAACTTTGGAACAGAACTCAGGTTCCGCACACTACCCCCACCTGGTTACTTTGAACCATTTGAGAAGCTATTTAAAGAATGTCTGAAATTGGGAGTGTTAGATGGTTATCTGTTTTTATTTGTGTGTGGTGATGATCCTAGAAAATTTGACATGTGGATTATGAAGGATTATGGTGTCCAAGAGTCTTGGACGAAAACTCTGGTTGTTGAAGGCTTTTATCTACCAACGGAACTTGCCAATGATGTTTATGAAGCACTGGTGTTTTTGAGAAATGGGGACATCCTGTTGTGCTACAATGACTGGATTGTGGTTTGTTATAACCAAGGAACAAAGAGTCTCAGGGAAACTAGAGTTGCTCGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

314

Amino Acids

36.45

Weight (kDa)

8.74

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 29 - 67 2e-07 F-box-like
F-box PF00646 30 - 68 1.4e-07 F-box domain
FBA_1 PF07734 107 - 284 5.6e-16 F-box associated beta propeller domain
FBA_3 PF08268 112 - 312 1.5e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 897
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AciI CCGC 3 cut(s) 399, 409, 604
AclWI GGATC 1 cut(s) 707
AcsI RAATTY 1 cut(s) 722
AfiI CCNNNNNNNGG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 4 cut(s) 151, 508, 632, 788
AjnI CCWGG 1 cut(s) 619
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
AluBI AGCT 4 cut(s) 94, 339, 527, 646
AluI AGCT 4 cut(s) 94, 339, 527, 646
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 2 cut(s) 247, 920
AlwI GGATC 1 cut(s) 707
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 385, 396
ApoI RAATTY 1 cut(s) 722
AspLEI GCGC 2 cut(s) 216, 291
AspS9I GGNCC 3 cut(s) 74, 294, 309
AsuHPI GGTGA 2 cut(s) 24, 719
AsuII TTCGAA 1 cut(s) 221
AvaII GGWCC 2 cut(s) 74, 294
AxyI CCTNAGG 1 cut(s) 480
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 2 cut(s) 372, 408
BccI CCATC 2 cut(s) 300, 674
BciT130I CCWGG 1 cut(s) 621
BciVI GTATCC 1 cut(s) 231
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 247, 920
BfaI CTAG 2 cut(s) 717, 927
BfmI CTRYAG 2 cut(s) 79, 154
BfoI RGCGCY 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 147
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 3 cut(s) 386, 397, 400
BlsI GCNGC 3 cut(s) 387, 398, 401
Bme1390I CCNGG 1 cut(s) 621
Bme18I GGWCC 2 cut(s) 74, 294
BmgT120I GGNCC 3 cut(s) 74, 294, 309
BmiI GGNNCC 2 cut(s) 76, 602
BmrFI CCNGG 1 cut(s) 621
BmrI ACTGGG 1 cut(s) 487
BmuI ACTGGG 1 cut(s) 487
Bpu14I TTCGAA 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 109
BsaBI GATNNNNATC 2 cut(s) 242, 684
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 369, 901
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 3 cut(s) 493, 840, 884
Bse21I CCTNAGG 1 cut(s) 480
Bse3DI GCAATG 2 cut(s) 272, 312
Bse8I GATNNNNATC 2 cut(s) 242, 684
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 369, 901
BseGI GGATG 1 cut(s) 858
BseJI GATNNNNATC 2 cut(s) 242, 684
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 2 cut(s) 272, 312
BseMII CTCAG 4 cut(s) 443, 494, 610, 931
BseNI ACTGG 3 cut(s) 493, 840, 884
BseRI GAGGAG 1 cut(s) 468
BseXI GCAGC 2 cut(s) 372, 408
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 1 cut(s) 310
BsiEI CGRYCG 1 cut(s) 409
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 1 cut(s) 286
BslFI GGGAC 2 cut(s) 60, 869
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 2 cut(s) 247, 920
BsmFI GGGAC 2 cut(s) 60, 869
BsnI GGCC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 247
Bsp119I TTCGAA 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 3 cut(s) 243, 514, 712
BspACI CCGC 3 cut(s) 399, 409, 604
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 4 cut(s) 442, 493, 609, 930
BspLI GGNNCC 2 cut(s) 76, 602
BspMAI CTGCAG 2 cut(s) 83, 158
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 1 cut(s) 707
BspQI GCTCTTC 1 cut(s) 534
BspT104I TTCGAA 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 247
BsrDI GCAATG 2 cut(s) 272, 312
BsrI ACTGG 3 cut(s) 493, 840, 884
BssECI CCNNGG 2 cut(s) 369, 901
BssMI GATC 3 cut(s) 243, 514, 712
BssT1I CCWWGG 2 cut(s) 369, 901
Bst2UI CCWGG 1 cut(s) 621
Bst6I CTCTTC 2 cut(s) 152, 534
BstBI TTCGAA 1 cut(s) 221
BstDEI CTNAG 5 cut(s) 429, 480, 596, 917, 942
BstF5I GGATG 1 cut(s) 858
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 2 cut(s) 216, 291
BstKTI GATC 3 cut(s) 246, 517, 715
BstMAI GTCTC 2 cut(s) 247, 920
BstMBI GATC 3 cut(s) 243, 514, 712
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 2 cut(s) 408, 497
BstNI CCWGG 1 cut(s) 621
BstNSI RCATGY 5 cut(s) 214, 321, 396, 575, 733
BstSCI CCNGG 1 cut(s) 619
BstSFI CTRYAG 2 cut(s) 79, 154
BstV1I GCAGC 2 cut(s) 372, 408
Bsu36I CCTNAGG 1 cut(s) 480
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 858
BtsIMutI CAGTG 1 cut(s) 833
BveI ACCTGC 1 cut(s) 147
CfoI GCGC 2 cut(s) 216, 291
Cfr13I GGNCC 3 cut(s) 74, 294, 309
CsiI ACCWGGT 1 cut(s) 619
CviAII CATG 6 cut(s) 211, 318, 393, 521, 572, 730
DdeI CTNAG 5 cut(s) 429, 480, 596, 917, 942
DpnI GATC 3 cut(s) 245, 516, 714
DpnII GATC 3 cut(s) 243, 514, 712
DraI TTTAAA 1 cut(s) 652
Eam1104I CTCTTC 2 cut(s) 152, 534
EarI CTCTTC 2 cut(s) 152, 534
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 2 cut(s) 369, 901
Eco24I GRGCYC 1 cut(s) 529
Eco31I GGTCTC 1 cut(s) 247
Eco47I GGWCC 2 cut(s) 74, 294
Eco53kI GAGCTC 1 cut(s) 527
Eco81I CCTNAGG 1 cut(s) 480
EcoICRI GAGCTC 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 619
EcoT14I CCWWGG 2 cut(s) 369, 901
EcoT22I ATGCAT 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 369, 901
FaeI CATG 6 cut(s) 214, 321, 396, 524, 575, 733
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 2 cut(s) 60, 869
FatI CATG 6 cut(s) 210, 317, 392, 520, 571, 729
FauNDI CATATG 1 cut(s) 164
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 386, 397, 400
FokI GGATG 1 cut(s) 845
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 3 cut(s) 386, 397, 400
FspBI CTAG 2 cut(s) 717, 927
GlaI GCGC 2 cut(s) 215, 290
GluI GCNGC 3 cut(s) 386, 397, 400
HaeII RGCGCY 1 cut(s) 292
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 286
HhaI GCGC 2 cut(s) 216, 291
Hin1II CATG 6 cut(s) 214, 321, 396, 524, 575, 733
Hin6I GCGC 2 cut(s) 214, 289
HinP1I GCGC 2 cut(s) 214, 289
HinfI GANTC 4 cut(s) 84, 485, 761, 913
HpaII CCGG 1 cut(s) 286
HphI GGTGA 2 cut(s) 24, 719
Hpy188I TCNGA 5 cut(s) 193, 347, 432, 663, 939
Hpy188III TCNNGA 4 cut(s) 139, 247, 450, 482
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 3 cut(s) 3, 736, 782
HpyF10VI GCNNNNNNNGC 2 cut(s) 408, 497
HpyF3I CTNAG 5 cut(s) 429, 480, 596, 917, 942
Hsp92II CATG 6 cut(s) 214, 321, 396, 524, 575, 733
HspAI GCGC 2 cut(s) 214, 289
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 3 cut(s) 243, 514, 712
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 524
Lsp1109I GCAGC 2 cut(s) 372, 408
MabI ACCWGGT 1 cut(s) 619
MaeI CTAG 2 cut(s) 717, 927
MaeIII GTNAC 2 cut(s) 225, 623
MalI GATC 3 cut(s) 245, 516, 714
MboI GATC 3 cut(s) 243, 514, 712
MboII GAAGA 5 cut(s) 59, 68, 139, 521, 564
MfeI CAATTG 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 4 cut(s) 331, 441, 665, 722
MlyI GAGTC 3 cut(s) 479, 770, 922
MmeI TCCRAC 2 cut(s) 112, 216
MnlI CCTC 4 cut(s) 155, 207, 418, 489
Mph1103I ATGCAT 1 cut(s) 577
MseI TTAA 2 cut(s) 579, 651
MspA1I CMGCKG 1 cut(s) 399
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 621
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 621
MwoI GCNNNNNNNGC 2 cut(s) 408, 497
NdeI CATATG 1 cut(s) 164
NdeII GATC 3 cut(s) 243, 514, 712
NlaIII CATG 6 cut(s) 214, 321, 396, 524, 575, 733
NlaIV GGNNCC 2 cut(s) 76, 602
NsiI ATGCAT 1 cut(s) 577
NspI RCATGY 5 cut(s) 214, 321, 396, 575, 733
NspV TTCGAA 1 cut(s) 221
PaqCI CACCTGC 1 cut(s) 147
PciI ACATGT 1 cut(s) 729
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 3 cut(s) 387, 398, 401
PleI GAGTC 3 cut(s) 479, 769, 921
PpsI GAGTC 3 cut(s) 479, 769, 921
PpuMI RGGWCCY 1 cut(s) 74
PscI ACATGT 1 cut(s) 729
PsiI TTATAA 1 cut(s) 897
Psp124BI GAGCTC 1 cut(s) 529
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 2 cut(s) 76, 602
PspPI GGNCC 3 cut(s) 74, 294, 309
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 2 cut(s) 83, 158
SacI GAGCTC 1 cut(s) 529
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 2 cut(s) 579, 651
SatI GCNGC 3 cut(s) 386, 397, 400
Sau3AI GATC 3 cut(s) 243, 514, 712
Sau96I GGNCC 3 cut(s) 74, 294, 309
SchI GAGTC 3 cut(s) 479, 770, 922
ScrFI CCNGG 1 cut(s) 621
SduI GDGCHC 1 cut(s) 529
SexAI ACCWGGT 1 cut(s) 619
SfcI CTRYAG 2 cut(s) 79, 154
SfuI TTCGAA 1 cut(s) 221
SinI GGWCC 2 cut(s) 74, 294
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 4 cut(s) 331, 441, 665, 722
SsiI CCGC 3 cut(s) 399, 409, 604
SspMI CTAG 2 cut(s) 717, 927
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 1 cut(s) 619
StyI CCWWGG 2 cut(s) 369, 901
TaqI TCGA 1 cut(s) 221
TasI AATT 4 cut(s) 331, 441, 665, 722
TauI GCSGC 1 cut(s) 402
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 2 cut(s) 579, 651
Tru9I TTAA 2 cut(s) 579, 651
TscAI CASTG 1 cut(s) 840
TseI GCWGC 2 cut(s) 385, 396
TspDTI ATGAA 4 cut(s) 521, 556, 755, 843
TspGWI ACGGA 2 cut(s) 59, 821
TspRI CASTG 1 cut(s) 840
VpaK11BI GGWCC 2 cut(s) 74, 294
XapI RAATTY 1 cut(s) 722
XceI RCATGY 5 cut(s) 214, 321, 396, 575, 733
XspI CTAG 2 cut(s) 717, 927
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.