Rh4BG224700

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000298
Physical Location & Seq
Forward (+)
38787682 .. 38789389
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG224700.1

Sequence Viewer

Length: 876 bp
ATGTACACCATTGGAACAGGAGTGTGGAGAGACATTGGAAAGCCTCCTTATGGCGCTGTGCGATCACCATTCAATGCTTTTCTACATGGAGCTCTTCATTGGGCTACGCAGTATTGGACTGGTGATGAATTTATGCATTCATTCAACTTCGAAACAGAAAAGTTTGAAACAATACCCCCACCTAGCCACTTTGCCCCAAAAGATAAACTTAAAGAGTGGTTGACCTTGGGGGTGTTAGAAGGTTGTCTCCTGTTATGTGTGTTTGATGATGATTCTAGCAAATTTGAAATGTGGATTATGAGAGATTATGGTGTCCAAGACTCTTGGACGAAGATTTTTGTTATTGAAAACTTGTACCCAAGAAGATATCAACCTGAAGAGTATGGACCAATTATGTTTTTGAGTAATGGTGAAATTCTAATGTCCTATGGTGTTGGTGCTGTGGTTTGTTATAACCCAGAAACAAAGAGTTTCAGGAAAACTAGTATTGCTCCGACTGAGTCAGAATTTGTTGCAGTTGCCTACAGTCCATCATTTGTTTCACTCTACGATATTGCAAAAGGAGAGGAGGTGGAAAGGATAAGAAACAATGAGAATTTCAACAAGCTGTTTACTGAAGGGAGTAGTAGTGCTGCTGGTTCTGGAACGTCAGCCCACCAGTGCACAAATCTAAACCCAGGCTCTTGCCCACCTGGTGTTGAAGAGGCTCTCCCTAAACCTATTATTACAACTTCCTCTGCAACTAGCAATGAGCAAGTGGATTTTGCTCTGAGGATTGGGAGTAAGTGCGCTATATGTGGTGGGCAATTGGGTTATGTTTTCAGAGGTAAAGGGTTCGCAATGTGTCAAAAATGTTTTGATGCTAGTTCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

291

Amino Acids

32.34

Weight (kDa)

5.24

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 181 9e-14 F-box associated beta propeller domain
FBA_3 PF08268 2 - 169 1.1e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AcsI RAATTY 5 cut(s) 128, 281, 414, 506, 595
AcuI CTGAAG 2 cut(s) 396, 636
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 2 cut(s) 5, 356
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 7 cut(s) 73, 145, 167, 287, 347, 601, 701
AhlI ACTAGT 1 cut(s) 482
AjnI CCWGG 2 cut(s) 676, 691
AluBI AGCT 2 cut(s) 92, 607
AluI AGCT 2 cut(s) 92, 607
Alw21I GWGCWC 2 cut(s) 94, 665
Alw26I GTCTC 2 cut(s) 24, 251
Alw44I GTGCAC 1 cut(s) 661
ApaLI GTGCAC 1 cut(s) 661
ApeKI GCWGC 1 cut(s) 632
ApoI RAATTY 5 cut(s) 128, 281, 414, 506, 595
AspLEI GCGC 2 cut(s) 56, 791
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 3 cut(s) 57, 134, 422
AsuII TTCGAA 1 cut(s) 150
AvaII GGWCC 1 cut(s) 386
BaeGI GKGCMC 1 cut(s) 665
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 2 cut(s) 94, 665
BbvI GCAGC 1 cut(s) 619
BccI CCATC 1 cut(s) 538
BciT130I CCWGG 2 cut(s) 678, 693
BcoDI GTCTC 2 cut(s) 24, 251
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 5 cut(s) 183, 276, 483, 744, 864
BfmI CTRYAG 1 cut(s) 523
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 1 cut(s) 633
BlsI GCNGC 1 cut(s) 634
Bme1390I CCNGG 2 cut(s) 678, 693
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 386
BmrFI CCNGG 2 cut(s) 678, 693
BmsI GCATC 1 cut(s) 850
Bpu14I TTCGAA 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 225, 676
BsaXI ACNNNNNCTCC 4 cut(s) 555, 585, 613, 643
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 124, 658
Bse3DI GCAATG 2 cut(s) 754, 846
BseBI CCWGG 2 cut(s) 678, 693
BseDI CCNNGG 2 cut(s) 225, 676
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 2 cut(s) 754, 846
BseMII CTCAG 2 cut(s) 489, 761
BseNI ACTGG 2 cut(s) 124, 658
BseRI GAGGAG 1 cut(s) 581
BseSI GKGCMC 1 cut(s) 665
BseXI GCAGC 1 cut(s) 619
BsiHKAI GWGCWC 2 cut(s) 94, 665
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 24, 251
BsmI GAATGC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 94, 665
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 490, 762
BspQI GCTCTTC 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 150
BsrDI GCAATG 2 cut(s) 754, 846
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 124, 658
BssECI CCNNGG 2 cut(s) 225, 676
BssMI GATC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 678, 693
Bst4CI ACNGT 1 cut(s) 527
Bst6I CTCTTC 3 cut(s) 99, 372, 696
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 498, 770
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 56, 791
BstKTI GATC 1 cut(s) 65
BstMAI GTCTC 2 cut(s) 24, 251
BstMBI GATC 1 cut(s) 62
BstNI CCWGG 2 cut(s) 678, 693
BstSCI CCNGG 2 cut(s) 676, 691
BstSFI CTRYAG 1 cut(s) 523
BstSLI GKGCMC 1 cut(s) 665
BstV1I GCAGC 1 cut(s) 619
BtsIMutI CAGTG 1 cut(s) 665
CfoI GCGC 2 cut(s) 56, 791
Cfr13I GGNCC 1 cut(s) 386
CsiI ACCWGGT 1 cut(s) 691
Csp6I GTAC 2 cut(s) 4, 355
CviAII CATG 1 cut(s) 86
CviJI RGCY 8 cut(s) 43, 92, 104, 186, 607, 653, 681, 707
CviKI_1 RGCY 8 cut(s) 43, 92, 104, 186, 607, 653, 681, 707
CviQI GTAC 2 cut(s) 4, 355
DdeI CTNAG 2 cut(s) 498, 770
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
DraIII CACNNNGTG 1 cut(s) 695
Eam1104I CTCTTC 3 cut(s) 99, 372, 696
EarI CTCTTC 3 cut(s) 99, 372, 696
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 386
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 396, 636
EcoICRI GAGCTC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 676, 691
EcoRV GATATC 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 1 cut(s) 89
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 633
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 633
FspBI CTAG 5 cut(s) 183, 276, 483, 744, 864
GlaI GCGC 2 cut(s) 55, 790
GluI GCNGC 1 cut(s) 633
HaeII RGCGCY 1 cut(s) 57
HhaI GCGC 2 cut(s) 56, 791
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 2 cut(s) 54, 789
HinP1I GCGC 2 cut(s) 54, 789
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 3 cut(s) 272, 320, 500
HphI GGTGA 3 cut(s) 57, 134, 422
Hpy166II GTNNAC 4 cut(s) 6, 222, 612, 663
Hpy188I TCNGA 4 cut(s) 495, 505, 771, 824
Hpy188III TCNNGA 3 cut(s) 475, 642, 873
Hpy8I GTNNAC 4 cut(s) 6, 222, 612, 663
HpyAV CCTTC 2 cut(s) 233, 611
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4IV ACGT 1 cut(s) 647
HpyCH4V TGCA 5 cut(s) 136, 515, 557, 663, 740
HpyF3I CTNAG 2 cut(s) 498, 770
HpySE526I ACGT 1 cut(s) 647
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 2 cut(s) 54, 789
Kzo9I GATC 1 cut(s) 62
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 89, 496
Lsp1109I GCAGC 1 cut(s) 619
LweI GCATC 1 cut(s) 850
MabI ACCWGGT 1 cut(s) 691
MaeI CTAG 5 cut(s) 183, 276, 483, 744, 864
MaeII ACGT 1 cut(s) 647
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 5 cut(s) 86, 343, 375, 389, 713
MfeI CAATTG 1 cut(s) 806
MhlI GDGCHC 2 cut(s) 94, 665
MluCI AATT 7 cut(s) 128, 281, 390, 414, 506, 595, 806
MlyI GAGTC 2 cut(s) 314, 509
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 7 cut(s) 54, 559, 562, 697, 745, 765, 818
Mph1103I ATGCAT 1 cut(s) 138
MseI TTAA 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 678, 693
MunI CAATTG 1 cut(s) 806
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 2 cut(s) 678, 693
NdeII GATC 1 cut(s) 62
NlaIII CATG 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 138
NspV TTCGAA 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 99
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 272
PflFI GACNNNGTC 1 cut(s) 499
PkrI GCNGC 1 cut(s) 634
PleI GAGTC 2 cut(s) 314, 508
PpsI GAGTC 2 cut(s) 314, 508
PsiI TTATAA 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 676, 691
PspGI CCWGG 2 cut(s) 676, 691
PspPI GGNCC 1 cut(s) 386
PsyI GACNNNGTC 1 cut(s) 499
RsaI GTAC 2 cut(s) 5, 356
RsaNI GTAC 2 cut(s) 4, 355
SacI GAGCTC 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 633
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 1 cut(s) 386
SchI GAGTC 2 cut(s) 314, 509
ScrFI CCNGG 2 cut(s) 678, 693
SduI GDGCHC 2 cut(s) 94, 665
SexAI ACCWGGT 1 cut(s) 691
SfaNI GCATC 1 cut(s) 850
SfcI CTRYAG 1 cut(s) 523
SfuI TTCGAA 1 cut(s) 150
SinI GGWCC 1 cut(s) 386
SpeI ACTAGT 1 cut(s) 482
Sse9I AATT 7 cut(s) 128, 281, 390, 414, 506, 595, 806
SspMI CTAG 5 cut(s) 183, 276, 483, 744, 864
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 676, 691
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 527
TaiI ACGT 1 cut(s) 650
TaqI TCGA 1 cut(s) 150
TasI AATT 7 cut(s) 128, 281, 390, 414, 506, 595, 806
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 665
TseI GCWGC 1 cut(s) 632
TspDTI ATGAA 3 cut(s) 86, 129, 141
TspRI CASTG 1 cut(s) 665
Tth111I GACNNNGTC 1 cut(s) 499
VneI GTGCAC 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 386
XapI RAATTY 5 cut(s) 128, 281, 414, 506, 595
XspI CTAG 5 cut(s) 183, 276, 483, 744, 864
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.