RchiOBHm_Chr4g0420081

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Forward (+)
45747677 .. 45748270
594 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38985

Sequence Viewer

Length: 594 bp
ATGATATACACCATTGGTACAGGAGTTTGGAGAAGTATTGGAAAGCCTCCTAGTGGCTGTAGAGGTGGCCCAATACCATTCAATTCCTTTCTGCATGGAGCTCTTCATTGGATTCCCGTTTATTACTGTCCTTCTCCATCTATACAATCTTTCGACTTTGAAAGAGAAGAATTTCGACCACTACTACTTCCCCCACAAGTCAACAAATATATTGCTTTGAGGTTGGGAGTCTTGAAAGGTTGTCTCTTTATATGTGTGTTTGGTGGTGATGGTAGGAAATCTGACATGTGGCTTATGAAGAATTATGGTGTTCAAGAGTCTTGGACGAAAGTTCTTGTCATCGAACACTTGTATCCAAGGATATACAGTTCCCTGAGTAATGTGTATGAACCAATTCTGTTCTTGAGTGATGTGGAAATCCTAATGGCGTATGACAGGTTTATGGTCCGTTATAATCTAGAAACAAAGTGTCTAGAAAAAACTCGCATTGTTCAGACTCGGTCTAAGTTTCAGGCATTTGGTTACTATCCTAGTTTTGTTTCACTCCATGATGTTGCAAATGGAGAGGAGGTGAAAAGGTACATACTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

197

Amino Acids

22.81

Weight (kDa)

9.04

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 181 3.2e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AcsI RAATTY 1 cut(s) 170
AfaI GTAC 2 cut(s) 19, 581
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 4 cut(s) 82, 161, 235, 314
AloI GAACNNNNNNTCC 2 cut(s) 352, 384
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 248
AoxI GGCC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 170
Asp700I GAANNNNTTC 2 cut(s) 171, 393
AspS9I GGNCC 2 cut(s) 68, 445
AsuHPI GGTGA 2 cut(s) 278, 583
AvaII GGWCC 1 cut(s) 445
BaeI ACNNNNGTAYC 4 cut(s) 9, 42, 335, 368
BanII GRGCYC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 103
BccI CCATC 2 cut(s) 145, 263
BciVI GTATCC 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 4 cut(s) 51, 458, 473, 531
BfmI CTRYAG 1 cut(s) 58
BfuI GTATCC 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 2 cut(s) 68, 445
BpuEI CTTGAG 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 356
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 581
BshFI GGCC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 103
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 366
BspQI GCTCTTC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 128, 368
Bst6I CTCTTC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 374, 504
BstMAI GTCTC 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 68, 445
Csp6I GTAC 2 cut(s) 18, 580
CviAII CATG 3 cut(s) 95, 286, 548
CviJI RGCY 5 cut(s) 46, 57, 69, 101, 292
CviKI_1 RGCY 5 cut(s) 46, 57, 69, 101, 292
CviQI GTAC 2 cut(s) 18, 580
DdeI CTNAG 2 cut(s) 374, 504
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 356
Eco24I GRGCYC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 445
Eco53kI GAGCTC 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 3 cut(s) 98, 289, 551
FatI CATG 3 cut(s) 94, 285, 547
FriOI GRGCYC 1 cut(s) 103
FspBI CTAG 4 cut(s) 51, 458, 473, 531
HaeIII GGCC 1 cut(s) 69
Hin1II CATG 3 cut(s) 98, 289, 551
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 4 cut(s) 112, 228, 317, 496
HphI GGTGA 2 cut(s) 278, 583
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 283, 495
Hpy188III TCNNGA 5 cut(s) 232, 314, 403, 458, 473
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 2 cut(s) 128, 368
HpyCH4V TGCA 2 cut(s) 94, 557
HpyF3I CTNAG 2 cut(s) 374, 504
Hsp92II CATG 3 cut(s) 98, 289, 551
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 4 cut(s) 6, 386, 421, 497
MaeI CTAG 4 cut(s) 51, 458, 473, 531
MaeIII GTNAC 1 cut(s) 521
MboII GAAGA 3 cut(s) 95, 179, 310
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 4 cut(s) 82, 170, 301, 393
MlyI GAGTC 3 cut(s) 237, 326, 490
MnlI CCTC 5 cut(s) 56, 57, 213, 559, 562
MroXI GAANNNNTTC 2 cut(s) 171, 393
NlaIII CATG 3 cut(s) 98, 289, 551
NspI RCATGY 1 cut(s) 289
PciI ACATGT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 108
PdmI GAANNNNTTC 2 cut(s) 171, 393
PfeI GAWTC 1 cut(s) 112
PflFI GACNNNGTC 1 cut(s) 499
PleI GAGTC 3 cut(s) 236, 325, 490
PpsI GAGTC 3 cut(s) 236, 325, 490
PscI ACATGT 1 cut(s) 285
PsiI TTATAA 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 68, 445
PsyI GACNNNGTC 1 cut(s) 499
RsaI GTAC 2 cut(s) 19, 581
RsaNI GTAC 2 cut(s) 18, 580
SacI GAGCTC 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 108
Sau96I GGNCC 2 cut(s) 68, 445
SchI GAGTC 3 cut(s) 237, 326, 490
SduI GDGCHC 1 cut(s) 103
SetI ASST 7 cut(s) 67, 103, 224, 241, 440, 573, 581
SfcI CTRYAG 1 cut(s) 58
SinI GGWCC 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 4 cut(s) 82, 170, 301, 393
SspMI CTAG 4 cut(s) 51, 458, 473, 531
SstI GAGCTC 1 cut(s) 103
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 128, 368
TaqI TCGA 3 cut(s) 153, 175, 342
TaqII GACCGA 1 cut(s) 489
TasI AATT 4 cut(s) 82, 170, 301, 393
TfiI GAWTC 1 cut(s) 112
TspDTI ATGAA 3 cut(s) 95, 311, 402
TspGWI ACGGA 1 cut(s) 437
Tth111I GACNNNGTC 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 1 cut(s) 170
XbaI TCTAGA 2 cut(s) 457, 472
XceI RCATGY 1 cut(s) 289
XmnI GAANNNNTTC 2 cut(s) 171, 393
XspI CTAG 4 cut(s) 51, 458, 473, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.