Rh5CG465500

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000298
Physical Location & Seq
Reverse (-)
64758527 .. 64759575
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG465500.1

Sequence Viewer

Length: 261 bp
ATGTTCAATTATGATGATCCTCGGGTTGTAGTTTGTTATAATCCAGAAGCAAAGAGTTTCAGGGAAGCTAGAATTACTTCGACTACCTTGCCATTGATTCAACTTGCTTACCGTCCATCCTTTGTTTCGCTCTATGATGTTTCAAAAAGAGAGGAGGTGAAAAGGGTAAGAGATTTTAAGAAATCTAACAAGCTGCTGGGGGTAGGGAGTAGTGGTTTTGCTTGTCGGGCCAGCCTTCTTTTGAATAGGCAGGCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

86

Amino Acids

9.82

Weight (kDa)

9.86

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 253
AclWI GGATC 1 cut(s) 11
AgsI TTSAA 4 cut(s) 7, 101, 144, 244
AluBI AGCT 2 cut(s) 68, 193
AluI AGCT 2 cut(s) 68, 193
AlwI GGATC 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 21
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 169
AvaI CYCGRG 1 cut(s) 21
BanI GGYRCC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BfaI CTAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 180
BseYI CCCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 21
BsnI GGCC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 21
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 232, 252
BstF5I GGATG 1 cut(s) 116
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 232, 252
Cfr13I GGNCC 1 cut(s) 228
CviJI RGCY 4 cut(s) 68, 193, 230, 234
CviKI_1 RGCY 4 cut(s) 68, 193, 230, 234
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 21
FaiI YATR 4 cut(s) 12, 39, 135, 259
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 194
GsaI CCCAGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 230
HinfI GANTC 1 cut(s) 97
HphI GGTGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 5 cut(s) 46, 57, 182, 236, 244
Lsp1109I GCAGC 1 cut(s) 180
MaeI CTAG 1 cut(s) 69
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MluCI AATT 2 cut(s) 7, 72
MnlI CCTC 3 cut(s) 30, 145, 148
MroXI GAANNNNTTC 1 cut(s) 76
MseI TTAA 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 1 cut(s) 195
PsiI TTATAA 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 228
SetI ASST 4 cut(s) 70, 89, 159, 195
Sse9I AATT 2 cut(s) 7, 72
SspMI CTAG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 80
TasI AATT 2 cut(s) 7, 72
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseI GCWGC 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.