RchiOBHm_Chr4g0395621

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Forward (+)
11402990 .. 11404105
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36806

Sequence Viewer

Length: 1116 bp
ATGGAAATTCTCTCCAGGCTCACTCCCAACACTCTCATCAACTGCAGGTGCGTTTGCAAATCATGGCTTTTTGTGATTTCCCACCCTCATTTTAATCGTCTCCTCCATTCAAGATCCCCAATTGGCATCTTCATCCAGACATTTCCTCATCCCATCAGATGGAAAGGGAGGATACTAGAGTTCACCCAGATAGTAGAATGTGCTGCTCCTGATTTGCAGCTAGAGAAGATGAGTTTTCGTCCCAAAGTTAGCATACCGCTTATTGGTGACAAAGAGGGTTTCATAACGAAAAATGGTTTGTTAAACTCCTGCAATGGTTTACTTTGCTTGTCTGGACCGAAAAGAAATGATATCTTGTATGTGTGTAATCCAATTTTGGGTGAGTTCATCACCACACCACCTCTTAAAAATGGTATAGACTACCTCGCTTTTAATGGACTTGGTTTTAGTGCTGCTACCATTGAGTACAAAGTGTTAAAGACTTGCCAGGCGAATCAGGCTCAGATATACACCATTGGTACTGGAGTTTGGAGAGACATTGGACAGGCTCCTTTTGGCATTGTGTGGTTTCCGTTTAATGCTTTTCTACATGGAGCTCTTCATTGGGCTACCCAGTATTGGTCGGGTTATGAGTTTATGCATTCCTTCAACTTTGAAACAGAAAAGTTTCAAACAATACCCCCACCTAGCCACTTTGCACTGAAAAGGAAACTTAAAGAGCGGGTAACCTTGGGAGTGCTGGGACGTTGTCTCCTCTTATGTGCCTTTGAAGATGACAGTAGCAAATTTGATATGTGGGTTATGAAGGATTATGGTGTCCAAGAGTCTTGGACAAAGTTTCTTGTTATTGAAAACTTGAGCCCCACAAGAAGTTTGACACGTGCAGACTATGAACCAATTATGTTCTTGAGTAACGGTGAAATCTTAATGTCGTATGATGCTTCTGCTGTGGTTTGTTATAATCCAGAAACAAAGAGTTTCAAGGAAACTAGTATTGGTCCGATTGGGTTAGGATTTGTCGCTACGTCTTATAGTCCATCCTTTGTTTCACTCTACTATATTTCAAAAGGAGAGGAGGTGGAAAGGTACTCTATCATAGATTACAAATATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

371

Amino Acids

42.22

Weight (kDa)

8.21

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 33 2.4e-06 F-box domain
F-box-like PF12937 2 - 30 8.1e-06 F-box-like
FBA_3 PF08268 99 - 335 5e-22 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 100 - 278 2.6e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 102 - 350 2.4e-25 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 960
AarI CACCTGC 1 cut(s) 36
Acc36I ACCTGC 1 cut(s) 36
AccB7I CCANNNNNTGG 1 cut(s) 159
AccBSI CCGCTC 1 cut(s) 721
AciI CCGC 2 cut(s) 257, 721
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 2 cut(s) 6, 785
AcvI CACGTG 1 cut(s) 881
AfaI GTAC 3 cut(s) 467, 520, 1088
AfiI CCNNNNNNNGG 4 cut(s) 159, 263, 377, 618
AflIII ACRYGT 1 cut(s) 878
AgsI TTSAA 8 cut(s) 111, 649, 656, 671, 770, 851, 982, 1065
AhlI ACTAGT 1 cut(s) 989
AjnI CCWGG 2 cut(s) 14, 486
AjuI GAANNNNNNNTTGG 2 cut(s) 978, 1010
AluBI AGCT 2 cut(s) 220, 596
AluI AGCT 2 cut(s) 220, 596
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 3 cut(s) 104, 528, 755
AlwI GGATC 1 cut(s) 108
ApeKI GCWGC 3 cut(s) 203, 217, 452
ApoI RAATTY 2 cut(s) 6, 785
Asp700I GAANNNNTTC 1 cut(s) 666
AspS9I GGNCC 2 cut(s) 335, 998
AsuHPI GGTGA 5 cut(s) 175, 278, 382, 392, 929
AvaII GGWCC 2 cut(s) 335, 998
BaeI ACNNNNGTAYC 4 cut(s) 164, 197, 510, 543
BanII GRGCYC 2 cut(s) 598, 863
BbrPI CACGTG 1 cut(s) 881
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 3 cut(s) 190, 229, 439
BccI CCATC 3 cut(s) 153, 161, 1045
BciT130I CCWGG 2 cut(s) 16, 488
BciVI GTATCC 1 cut(s) 165
BcoDI GTCTC 3 cut(s) 104, 528, 755
BcuI ACTAGT 1 cut(s) 989
BfaI CTAG 4 cut(s) 176, 221, 687, 990
BfmI CTRYAG 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 165
BisI GCNGC 3 cut(s) 204, 218, 453
BlsI GCNGC 3 cut(s) 205, 219, 454
Bme1390I CCNGG 2 cut(s) 16, 488
Bme18I GGWCC 2 cut(s) 335, 998
BmgT120I GGNCC 2 cut(s) 335, 998
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 2 cut(s) 16, 488
BmrI ACTGGG 1 cut(s) 607
BmsI GCATC 2 cut(s) 135, 928
BmuI ACTGGG 1 cut(s) 607
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 2 cut(s) 877, 928
BsaAI YACGTR 1 cut(s) 881
BsaJI CCNNGG 1 cut(s) 729
BsaXI ACNNNNNCTCC 4 cut(s) 735, 765, 1062, 1092
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 263, 377, 618
Bse1I ACTGG 2 cut(s) 526, 613
Bse3DI GCAATG 1 cut(s) 319
BseBI CCWGG 2 cut(s) 16, 488
BseDI CCNNGG 1 cut(s) 729
BseGI GGATG 3 cut(s) 132, 148, 1037
BseLI CCNNNNNNNGG 4 cut(s) 159, 263, 377, 618
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 515
BseNI ACTGG 2 cut(s) 526, 613
BseRI GAGGAG 3 cut(s) 92, 743, 1088
BseXI GCAGC 3 cut(s) 190, 229, 439
BseYI CCCAGC 1 cut(s) 739
BsgI GTGCAG 1 cut(s) 903
BsiHKAI GWGCWC 1 cut(s) 598
BslFI GGGAC 2 cut(s) 225, 756
BslI CCNNNNNNNGG 4 cut(s) 159, 263, 377, 618
BsmAI GTCTC 3 cut(s) 104, 528, 755
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 225, 756
BsmI GAATGC 1 cut(s) 640
Bsp1286I GDGCHC 2 cut(s) 598, 863
Bsp143I GATC 1 cut(s) 113
BspACI CCGC 2 cut(s) 257, 721
BspCNI CTCAG 1 cut(s) 514
BspLI GGNNCC 1 cut(s) 549
BspMAI CTGCAG 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 603
BsrBI CCGCTC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 319
BsrI ACTGG 2 cut(s) 526, 613
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 2 cut(s) 16, 488
Bst4CI ACNGT 2 cut(s) 779, 917
Bst6I CTCTTC 1 cut(s) 603
BstBAI YACGTR 1 cut(s) 881
BstDEI CTNAG 1 cut(s) 501
BstEII GGTNACC 1 cut(s) 724
BstF5I GGATG 3 cut(s) 132, 148, 1037
BstKTI GATC 1 cut(s) 116
BstMAI GTCTC 3 cut(s) 104, 528, 755
BstMBI GATC 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 2 cut(s) 16, 488
BstPI GGTNACC 1 cut(s) 724
BstSCI CCNGG 2 cut(s) 14, 486
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 3 cut(s) 190, 229, 439
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuI GTATCC 1 cut(s) 165
BtsCI GGATG 3 cut(s) 132, 148, 1037
BtsIMutI CAGTG 1 cut(s) 698
BveI ACCTGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 335, 998
Csp6I GTAC 3 cut(s) 466, 519, 1087
CviAII CATG 3 cut(s) 63, 590, 1113
CviJI RGCY 9 cut(s) 19, 67, 220, 500, 548, 596, 608, 690, 861
CviKI_1 RGCY 9 cut(s) 19, 67, 220, 500, 548, 596, 608, 690, 861
CviQI GTAC 3 cut(s) 466, 519, 1087
DdeI CTNAG 1 cut(s) 501
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 1 cut(s) 729
Eco24I GRGCYC 2 cut(s) 598, 863
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 335, 998
Eco53kI GAGCTC 1 cut(s) 596
Eco72I CACGTG 1 cut(s) 881
Eco91I GGTNACC 1 cut(s) 724
EcoICRI GAGCTC 1 cut(s) 596
EcoO65I GGTNACC 1 cut(s) 724
EcoRII CCWGG 2 cut(s) 14, 486
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 642
EcoT38I GRGCYC 2 cut(s) 598, 863
ErhI CCWWGG 1 cut(s) 729
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 3 cut(s) 66, 593, 1116
FaqI GGGAC 2 cut(s) 225, 756
FatI CATG 3 cut(s) 62, 589, 1112
FauI CCCGC 1 cut(s) 714
Fnu4HI GCNGC 3 cut(s) 204, 218, 453
FokI GGATG 3 cut(s) 119, 135, 1024
FriOI GRGCYC 2 cut(s) 598, 863
Fsp4HI GCNGC 3 cut(s) 204, 218, 453
FspBI CTAG 4 cut(s) 176, 221, 687, 990
GluI GCNGC 3 cut(s) 204, 218, 453
GsaI CCCAGC 1 cut(s) 743
GsuI CTGGAG 1 cut(s) 543
Hin1II CATG 3 cut(s) 66, 593, 1116
HinfI GANTC 2 cut(s) 493, 824
HphI GGTGA 5 cut(s) 175, 278, 382, 392, 929
Hpy166II GTNNAC 2 cut(s) 183, 320
Hpy188I TCNGA 3 cut(s) 158, 504, 1002
Hpy188III TCNNGA 6 cut(s) 111, 136, 209, 333, 907, 965
Hpy8I GTNNAC 2 cut(s) 183, 320
HpyAV CCTTC 2 cut(s) 655, 799
HpyCH4III ACNGT 2 cut(s) 779, 917
HpyCH4IV ACGT 3 cut(s) 745, 880, 1025
HpyCH4V TGCA 7 cut(s) 45, 57, 217, 312, 640, 698, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 1 cut(s) 501
HpySE526I ACGT 3 cut(s) 745, 880, 1025
Hsp92II CATG 3 cut(s) 66, 593, 1116
Kzo9I GATC 1 cut(s) 113
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 3 cut(s) 211, 553, 593
Lsp1109I GCAGC 3 cut(s) 190, 229, 439
LweI GCATC 2 cut(s) 135, 928
MaeI CTAG 4 cut(s) 176, 221, 687, 990
MaeII ACGT 3 cut(s) 745, 880, 1025
MaeIII GTNAC 3 cut(s) 266, 724, 911
MalI GATC 1 cut(s) 115
MbiI CCGCTC 1 cut(s) 721
MboI GATC 1 cut(s) 113
MboII GAAGA 4 cut(s) 121, 238, 590, 782
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 2 cut(s) 598, 863
MluCI AATT 5 cut(s) 6, 120, 372, 785, 897
MlyI GAGTC 1 cut(s) 833
Mph1103I ATGCAT 1 cut(s) 642
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 8 cut(s) 93, 302, 405, 432, 476, 576, 714, 926
MspR9I CCNGG 2 cut(s) 16, 488
MunI CAATTG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 2 cut(s) 16, 488
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 1 cut(s) 113
NlaIII CATG 3 cut(s) 66, 593, 1116
NlaIV GGNNCC 1 cut(s) 549
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 642
PaqCI CACCTGC 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 603
PctI GAATGC 1 cut(s) 640
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 1 cut(s) 493
PflFI GACNNNGTC 1 cut(s) 747
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 3 cut(s) 205, 219, 454
PleI GAGTC 1 cut(s) 832
PmaCI CACGTG 1 cut(s) 881
PmlI CACGTG 1 cut(s) 881
PpsI GAGTC 1 cut(s) 832
Ppu21I YACGTR 1 cut(s) 881
PsiI TTATAA 1 cut(s) 960
Psp124BI GAGCTC 1 cut(s) 598
Psp6I CCWGG 2 cut(s) 14, 486
PspCI CACGTG 1 cut(s) 881
PspEI GGTNACC 1 cut(s) 724
PspFI CCCAGC 1 cut(s) 739
PspGI CCWGG 2 cut(s) 14, 486
PspN4I GGNNCC 1 cut(s) 549
PspPI GGNCC 2 cut(s) 335, 998
PstI CTGCAG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 113
PsyI GACNNNGTC 1 cut(s) 747
RsaI GTAC 3 cut(s) 467, 520, 1088
RsaNI GTAC 3 cut(s) 466, 519, 1087
SacI GAGCTC 1 cut(s) 598
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 8 cut(s) 93, 302, 405, 432, 476, 576, 714, 926
SatI GCNGC 3 cut(s) 204, 218, 453
Sau3AI GATC 1 cut(s) 113
Sau96I GGNCC 2 cut(s) 335, 998
SchI GAGTC 1 cut(s) 833
ScrFI CCNGG 2 cut(s) 16, 488
SduI GDGCHC 2 cut(s) 598, 863
SfaNI GCATC 2 cut(s) 135, 928
SfcI CTRYAG 1 cut(s) 43
SinI GGWCC 2 cut(s) 335, 998
SmlI CTYRAG 2 cut(s) 856, 907
SmoI CTYRAG 2 cut(s) 856, 907
SpeI ACTAGT 1 cut(s) 989
Sse9I AATT 5 cut(s) 6, 120, 372, 785, 897
SsiI CCGC 2 cut(s) 257, 721
SspMI CTAG 4 cut(s) 176, 221, 687, 990
SstI GAGCTC 1 cut(s) 598
StyD4I CCNGG 2 cut(s) 14, 486
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 2 cut(s) 779, 917
TaiI ACGT 3 cut(s) 748, 883, 1028
TaqII GACCGA 1 cut(s) 352
TasI AATT 5 cut(s) 6, 120, 372, 785, 897
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 8 cut(s) 93, 302, 405, 432, 476, 576, 714, 926
Tru9I TTAA 8 cut(s) 93, 302, 405, 432, 476, 576, 714, 926
TscAI CASTG 1 cut(s) 705
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 3 cut(s) 203, 217, 452
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 6 cut(s) 121, 271, 376, 590, 818, 906
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 1 cut(s) 705
Tth111I GACNNNGTC 1 cut(s) 747
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 335, 998
XapI RAATTY 2 cut(s) 6, 785
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 4 cut(s) 176, 221, 687, 990
Zsp2I ATGCAT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.